mRNA_F-serratus_M_contig1260.1969.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1260.1969.1
Unique NamemRNA_F-serratus_M_contig1260.1969.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1260.1969.1 vs. uniprot
Match: D8LSF2_ECTSI (SDH1, succinate dehydrogenase subunit 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSF2_ECTSI)

HSP 1 Score: 427 bits (1099), Expect = 2.210e-145
Identity = 218/270 (80.74%), Postives = 235/270 (87.04%), Query Frame = 1 
Query:    1 ETAQIFSGVDVTKEPIPVLPTVHYNMGGIPTNHLGEV---------GACTFTAIVP--------ACASVHGANRLGANSLLDLVVFGRACALRIADIAKPGDKVAGAPKSETEKSIASLDRTRFADGATPVAELRLKLQKEMQDHAAVYRTQEVLAEGVRRVDGVVQEFKDINVADKSLIWNTNLIEAMELENLLSNAACTIHAAEARKESRGAHAREDFPDRLDDEWMKHSLTYFDYETGKTKVEYRPVHNFTLDEEECNTVAPFKRVY 759
            ETAQIFSGVDVTK+PIPVLPTVHYNMGGIPTNHLGEV               AIVP        ACASVHGANRLGANSLLD+VVFGRACALRIA+I+KPGDKVA APKS+TEKS+A+LD+TRFADGATPVA+LRLKLQKEMQDHAAVYRTQE LAEGV RVDGVV +F D+ V D+SLIWNT+LIEAMELENLLSNAACT+HAAEARKESRGAHAREDFPDRLDD WMKHS+TYFDY+TGKTKVEYRPVH+FTLDEEE   V PFKRVY
Sbjct:  271 ETAQIFSGVDVTKDPIPVLPTVHYNMGGIPTNHLGEVIRPKKDGDGNVTDHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIAEISKPGDKVAEAPKSQTEKSLAALDKTRFADGATPVADLRLKLQKEMQDHAAVYRTQESLAEGVTRVDGVVNDFSDVKVTDRSLIWNTDLIEAMELENLLSNAACTMHAAEARKESRGAHAREDFPDRLDDTWMKHSMTYFDYDTGKTKVEYRPVHSFTLDEEEVKMVPPFKRVY 540
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BLAST of mRNA_F-serratus_M_contig1260.1969.1 vs. uniprot
Match: A0A6H5KSI2_9PHAE (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI2_9PHAE)

HSP 1 Score: 427 bits (1097), Expect = 1.330e-143
Identity = 217/270 (80.37%), Postives = 236/270 (87.41%), Query Frame = 1 
Query:    1 ETAQIFSGVDVTKEPIPVLPTVHYNMGGIPTNHLGEV---------GACTFTAIVP--------ACASVHGANRLGANSLLDLVVFGRACALRIADIAKPGDKVAGAPKSETEKSIASLDRTRFADGATPVAELRLKLQKEMQDHAAVYRTQEVLAEGVRRVDGVVQEFKDINVADKSLIWNTNLIEAMELENLLSNAACTIHAAEARKESRGAHAREDFPDRLDDEWMKHSLTYFDYETGKTKVEYRPVHNFTLDEEECNTVAPFKRVY 759
            ETAQIFSGVDVTK+PIPVLPTVHYNMGGIPTNHLGEV               AIVP        ACASVHGANRLGANSLLD+VVFGRACALRIA+I+KPGDKVA APK++TEKS+A+LD+TRFADGATPVA+LRLKLQKEMQDHAAVYRTQE LAEGV RVDGVV++F D+ V D+SLIWNT+LIEAMELENLLSNAACT+HAAEARKESRGAHAREDFPDRLDD WMKHS+TYFDY+TGKTKVEYRPVH+FTLDEEE   V PFKRVY
Sbjct:  381 ETAQIFSGVDVTKDPIPVLPTVHYNMGGIPTNHLGEVIRPKKDGDGNVTDHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIAEISKPGDKVAEAPKAQTEKSLAALDKTRFADGATPVADLRLKLQKEMQDHAAVYRTQESLAEGVTRVDGVVKDFNDVKVTDRSLIWNTDLIEAMELENLLSNAACTMHAAEARKESRGAHAREDFPDRLDDTWMKHSMTYFDYDTGKTKVEYRPVHSFTLDEEEVKMVPPFKRVY 650
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BLAST of mRNA_F-serratus_M_contig1260.1969.1 vs. uniprot
Match: A0A835YUP3_9STRA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUP3_9STRA)

HSP 1 Score: 364 bits (935), Expect = 1.300e-119
Identity = 191/269 (71.00%), Postives = 210/269 (78.07%), Query Frame = 1 
Query:    1 ETAQIFSGVDVTKEPIPVLPTVHYNMGGIPTNHLGEV--------GACTFTAIVP--------ACASVHGANRLGANSLLDLVVFGRACALRIADIAKPGDKVAGAPKSETEKSIASLDRTRFADGATPVAELRLKLQKEMQDHAAVYRTQEVLAEGVRRVDGVVQEFKDINVADKSLIWNTNLIEAMELENLLSNAACTIHAAEARKESRGAHAREDFPDRLDDEWMKHSLTYFDYETGKTKVEYRPVHNFTLDEEECNTVAPFKRVY 759
            E A IFSGVDVTKEPIPVLPTVHYNMGGIPTNH GEV        G     AIVP        ACASVHGANRLGANSLLD+VVFGRACALRIADIAKPGDKV  APK+ET++++ +LD  R+A G T  AELRLKLQ+ MQD+AAVYRTQE LA GV  VD VV+EF D+ V D+SLIWNT+LIE MEL NLL NAACT+HAAEARKESRGAHAREDF DR D  WMKH+L  FD   GKT ++YRPVH FTLDE+EC  V PFKRVY
Sbjct:  349 ELAAIFSGVDVTKEPIPVLPTVHYNMGGIPTNHFGEVVKPRKNANGDIDQDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAKPGDKVQDAPKAETDRALGALDDMRYARGQTSTAELRLKLQRVMQDNAAVYRTQETLAHGVVSVDAVVKEFGDVGVTDRSLIWNTDLIETMELRNLLGNAACTMHAAEARKESRGAHAREDFKDRDDVNWMKHTLATFDESKGKTHLDYRPVHAFTLDEKECKVVPPFKRVY 617
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BLAST of mRNA_F-serratus_M_contig1260.1969.1 vs. uniprot
Match: A0A7S3ZYC3_9STRA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=3 Tax=cellular organisms TaxID=131567 RepID=A0A7S3ZYC3_9STRA)

HSP 1 Score: 350 bits (897), Expect = 1.790e-113
Identity = 178/270 (65.93%), Postives = 205/270 (75.93%), Query Frame = 1 
Query:    1 ETAQIFSGVDVTKEPIPVLPTVHYNMGGIPTNHLGEV---------GACTFTAIVP--------ACASVHGANRLGANSLLDLVVFGRACALRIADIAKPGDKVAGAPKSETEKSIASLDRTRFADGATPVAELRLKLQKEMQDHAAVYRTQEVLAEGVRRVDGVVQEFKDINVADKSLIWNTNLIEAMELENLLSNAACTIHAAEARKESRGAHAREDFPDRLDDEWMKHSLTYFDYETGKTKVEYRPVHNFTLDEEECNTVAPFKRVY 759
            ETA IF+GVDVT+EPIPVLPTVHYNMGGIPTNHLGEV               A+VP        ACASVHGANRLGANSLLD+VVFGRACALRIADIAKPGD V   P+   +K++  LD  R + G TP AE+R  +QK MQDHAAVYRTQE LAEGV ++D VV  F+D+ V+D+SLIWNT+L+E +EL NLL NAA T+HAAEARKESRGAHARED PDRLDD+WMKH++TY+D  T KT V YRP+H  TLDE+EC  V P  RVY
Sbjct:  384 ETAAIFAGVDVTREPIPVLPTVHYNMGGIPTNHLGEVIHQKKDASGNVVDHDAVVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAKPGDAVPPLPRDAGQKTLQDLDDVRHSSGPTPTAEIRRDMQKTMQDHAAVYRTQESLAEGVTKIDKVVDSFQDVGVSDRSLIWNTDLVETLELRNLLPNAAATMHAAEARKESRGAHAREDCPDRLDDDWMKHTMTYYDEATRKTSVTYRPIHYETLDEDECAVVPPVARVY 653
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BLAST of mRNA_F-serratus_M_contig1260.1969.1 vs. uniprot
Match: B8CCT7_THAPS (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CCT7_THAPS)

HSP 1 Score: 347 bits (890), Expect = 1.300e-112
Identity = 177/269 (65.80%), Postives = 207/269 (76.95%), Query Frame = 1 
Query:    1 ETAQIFSGVDVTKEPIPVLPTVHYNMGGIPTNHLGEVGACTFTA--------IVP--------ACASVHGANRLGANSLLDLVVFGRACALRIADIAKPGDKVAGAPKSETEKSIASLDRTRFADGATPVAELRLKLQKEMQDHAAVYRTQEVLAEGVRRVDGVVQEFKDINVADKSLIWNTNLIEAMELENLLSNAACTIHAAEARKESRGAHAREDFPDRLDDEWMKHSLTYFDYETGKTKVEYRPVHNFTLDEEECNTVAPFKRVY 759
            ETA IF+GVDVTKEPIPVLPTVHYNMGGIPTNHLGEV    F A        +VP        ACASVHGANRLGANSLLD+VVFGRACA RIA+IAKPGD +A AP      S+A LD+ RFA G+TP + +R ++Q  MQD AAVYRT+E+LAEG + +D VVQ F D++V DKSLIWNT+L+E +EL NLL  AA T+H+AE RKESRGAHA E++PDRLDDEWMKH+L YFD + GKTK+ YRP+H +TLDEEEC TV P  RVY
Sbjct:  369 ETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHLGEVIRTDFNADGSFNSDVVVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACANRIAEIAKPGDAIADAPADVGMDSVAELDKLRFATGSTPTSVIRGEMQHLMQDKAAVYRTEELLAEGKKEIDEVVQSFNDVHVTDKSLIWNTDLVETLELRNLLGCAATTMHSAENRKESRGAHAHENYPDRLDDEWMKHTLAYFDEKEGKTKIGYRPIHYYTLDEEECKTVPPVARVY 637
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BLAST of mRNA_F-serratus_M_contig1260.1969.1 vs. uniprot
Match: A0A8J9SUC5_PHATR (Hypothetical protein n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9SUC5_PHATR)

HSP 1 Score: 330 bits (847), Expect = 9.440e-111
Identity = 166/269 (61.71%), Postives = 203/269 (75.46%), Query Frame = 1 
Query:    1 ETAQIFSGVDVTKEPIPVLPTVHYNMGGIPTNHLGEV--------GACTFTAIVP--------ACASVHGANRLGANSLLDLVVFGRACALRIADIAKPGDKVAGAPKSETEKSIASLDRTRFADGATPVAELRLKLQKEMQDHAAVYRTQEVLAEGVRRVDGVVQEFKDINVADKSLIWNTNLIEAMELENLLSNAACTIHAAEARKESRGAHAREDFPDRLDDEWMKHSLTYFDYETGKTKVEYRPVHNFTLDEEECNTVAPFKRVY 759
            ETA IF+GVDVTKEPIPVLPTVHYNMGGIPTNH GEV        G  +   +VP        ACASVHGANRLGANSLLD+VVFGRACA RIA+IAKPGDK+A  P      SIA LD+ R+A+G    A++R ++Q  MQ+HAAVYRT + LAEG   +DGVV +FKD+ V DKSL+WNT+L+E +EL NLL+ A+ T++ AE RKESRGAHA ED+P R D+ WMKH+L+YFD  TG+T+++YRP+H +TLDE+EC TV P  RVY
Sbjct:   22 ETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHYGEVIRTKFDKDGNFSKDEVVPGLFASGESACASVHGANRLGANSLLDIVVFGRACANRIAEIAKPGDKIADGPSDVGFGSIAELDKLRYAEGHATTADIRSEMQSVMQEHAAVYRTTQTLAEGKTAIDGVVDKFKDVAVTDKSLVWNTDLVETLELRNLLACASTTMYGAENRKESRGAHAHEDYPTRDDENWMKHTLSYFDESTGRTEIKYRPIHYYTLDEDECKTVPPVARVY 290
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BLAST of mRNA_F-serratus_M_contig1260.1969.1 vs. uniprot
Match: A0A6U4KQK6_9STRA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4KQK6_9STRA)

HSP 1 Score: 342 bits (877), Expect = 1.160e-110
Identity = 176/264 (66.67%), Postives = 205/264 (77.65%), Query Frame = 1 
Query:    1 ETAQIFSGVDVTKEPIPVLPTVHYNMGGIPTNHLGEVGACTFT---AIVP--------ACASVHGANRLGANSLLDLVVFGRACALRIADIAKPGDKVAGAPKSETEKSIASLDRTRFADGATPVAELRLKLQKEMQDHAAVYRTQEVLAEGVRRVDGVVQEFKDINVADKSLIWNTNLIEAMELENLLSNAACTIHAAEARKESRGAHAREDFPDRLDDEWMKHSLTYFDYETGKTKVEYRPVHNFTLDEEECNTVAPFKRVY 759
            ETA IF+GVDVTKEPIPVLPTVHYNMGG+PTNH GEV   T     A+VP        A ASVHGANRLGANSLLD+VVFGRACA RIADIAKPG+ V   P    EK+I  LD+ RFADGA P A++RL +Q  MQ+HAAVYRT +VL EGV ++D VV++FKD+ V+D SL+WNT+LIE  EL NLL NAA T+H+AEARKESRGAHA E+FPDR D+ WMKH+L+Y D ++GKT V+YRPVH FTLDE EC TV P  RVY
Sbjct:  374 ETAAIFAGVDVTKEPIPVLPTVHYNMGGVPTNHFGEVLKPTKDEPDAVVPGLFAAGEVASASVHGANRLGANSLLDIVVFGRACANRIADIAKPGEAVPPLPTKAGEKTIDDLDKVRFADGAIPTADIRLDMQMTMQEHAAVYRTADVLKEGVVKMDEVVKKFKDVKVSDHSLVWNTDLIETWELRNLLPNAATTVHSAEARKESRGAHAHENFPDRDDENWMKHTLSYHDEDSGKTTVDYRPVHYFTLDEAECKTVPPVARVY 637
[Close]
BLAST of mRNA_F-serratus_M_contig1260.1969.1 vs. uniprot
Match: A0A7S4KAF0_9STRA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4KAF0_9STRA)

HSP 1 Score: 337 bits (863), Expect = 2.400e-108
Identity = 168/272 (61.76%), Postives = 208/272 (76.47%), Query Frame = 1 
Query:    1 ETAQIFSGVDVTKEPIPVLPTVHYNMGGIPTNHLGEVGACTFTA--------IVP--------ACASVHGANRLGANSLLDLVVFGRACALRIADIAKPGDKV---AGAPKSETEKSIASLDRTRFADGATPVAELRLKLQKEMQDHAAVYRTQEVLAEGVRRVDGVVQEFKDINVADKSLIWNTNLIEAMELENLLSNAACTIHAAEARKESRGAHAREDFPDRLDDEWMKHSLTYFDYETGKTKVEYRPVHNFTLDEEECNTVAPFKRVY 759
            ETA IF+GVDVTKEPIPVLPTVHYNMGG+PTNH GEV    F +        +VP        ACASVHGANRLGANSLLD+VVFGRACALRIAD+A PGD +    G P     +S+A LD+ R+ADG+TP +E+R ++Q  MQDHAAVYRT E+L EG  ++D VVQ F D+ V D+SL+WNT+L+E +EL NLL+NA+ T+H+A  RKESRGAHA E++PDR D+EWMKH+++YF+ ETGK++V+YRP+H  TLDEEEC TV P  RVY
Sbjct:  385 ETAAIFAGVDVTKEPIPVLPTVHYNMGGVPTNHYGEVVRTKFDSKGEFEQDEVVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADLAAPGDDIPDATGGPDGAGMQSLADLDKLRYADGSTPTSEIRGEMQAVMQDHAAVYRTSELLEEGAGKIDEVVQSFADVGVTDRSLVWNTDLVETLELRNLLANASTTMHSANVRKESRGAHAHENYPDRDDNEWMKHTVSYFNEETGKSEVKYRPIHYHTLDEEECATVPPVARVY 656
[Close]
BLAST of mRNA_F-serratus_M_contig1260.1969.1 vs. uniprot
Match: A0A7S2Y3D2_9STRA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y3D2_9STRA)

HSP 1 Score: 333 bits (855), Expect = 2.760e-107
Identity = 173/271 (63.84%), Postives = 206/271 (76.01%), Query Frame = 1 
Query:    1 ETAQIFSGVDVTKEPIPVLPTVHYNMGGIPTNHLGEV---------GACTFTAIVP--------ACASVHGANRLGANSLLDLVVFGRACALRIADIAKPGDKVAGAPKSETEKSIASLDRTRFADGATPVAELRLKLQKEMQDHAAVYRTQEVLAEGVRRVDGVVQE-FKDINVADKSLIWNTNLIEAMELENLLSNAACTIHAAEARKESRGAHAREDFPDRLDDEWMKHSLTYFDYETGKTKVEYRPVHNFTLDEEECNTVAPFKRVY 759
            ETA IF+GVDVTK+PIPVLPTVHYNMGGIPTNHLGEV             + AIVP        ACASVHGANRLGANSLLD+VVFGRACALRIADIAKPGDK    P    ++SIA +D+ R+A+G+T  A+LRL+LQK MQ HAAVYRT ++L +G+  VD + +    D+   DK L+WNTNLIE +EL NL++NA+  I +AE RKESRGAHAREDFPDR D+ WMKH+L YFD  TGK+K+EYRPVH+FTLDE+EC TV P +RVY
Sbjct:  374 ETASIFAGVDVTKDPIPVLPTVHYNMGGIPTNHLGEVINPKKAANGEVEDWDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAKPGDKKPPLPGDAGDQSIADVDKFRYANGSTSTADLRLELQKSMQTHAAVYRTPDLLKKGLDEVDAIAKRSVDDVRNDDKGLVWNTNLIETLELRNLVANASTVITSAENRKESRGAHAREDFPDRDDEHWMKHTLAYFDEATGKSKLEYRPVHSFTLDEDECKTVPPVQRVY 644
[Close]
BLAST of mRNA_F-serratus_M_contig1260.1969.1 vs. uniprot
Match: B5Y5N6_PHATC (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B5Y5N6_PHATC)

HSP 1 Score: 331 bits (848), Expect = 2.630e-106
Identity = 167/269 (62.08%), Postives = 203/269 (75.46%), Query Frame = 1 
Query:    1 ETAQIFSGVDVTKEPIPVLPTVHYNMGGIPTNHLGEV--------GACTFTAIVP--------ACASVHGANRLGANSLLDLVVFGRACALRIADIAKPGDKVAGAPKSETEKSIASLDRTRFADGATPVAELRLKLQKEMQDHAAVYRTQEVLAEGVRRVDGVVQEFKDINVADKSLIWNTNLIEAMELENLLSNAACTIHAAEARKESRGAHAREDFPDRLDDEWMKHSLTYFDYETGKTKVEYRPVHNFTLDEEECNTVAPFKRVY 759
            ETA IF+GVDVTKEPIPVLPTVHYNMGGIPTNH GEV        G  +   +VP        ACASVHGANRLGANSLLD+VVFGRACA RIA+IAKPGDK+A  P      SIA LD+ R+A+G    A++R ++Q  MQ+HAAVYRT + LAEG   +DGVV +FKDI V DKSL+WNT+L+E +EL NLL+ A+ T++ AE RKESRGAHA ED+P R D+ WMKH+L+YFD  TG+T+++YRP+H +TLDE+EC TV P  RVY
Sbjct:  370 ETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHYGEVIRTKFDKDGNFSKDEVVPGLFASGESACASVHGANRLGANSLLDIVVFGRACANRIAEIAKPGDKIADGPSDVGFGSIAELDKLRYAEGHATTADIRSEMQSVMQEHAAVYRTTQTLAEGKTAIDGVVDKFKDIAVTDKSLVWNTDLVETLELRNLLACASTTMYGAENRKESRGAHAHEDYPTRDDENWMKHTLSYFDESTGRTEIKYRPIHYYTLDEDECKTVPPVARVY 638
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1260.1969.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSF2_ECTSI2.210e-14580.74SDH1, succinate dehydrogenase subunit 1 n=1 Tax=Ec... [more]
A0A6H5KSI2_9PHAE1.330e-14380.37Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
A0A835YUP3_9STRA1.300e-11971.00Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
A0A7S3ZYC3_9STRA1.790e-11365.93Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
B8CCT7_THAPS1.300e-11265.80Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
A0A8J9SUC5_PHATR9.440e-11161.71Hypothetical protein n=1 Tax=Phaeodactylum tricorn... [more]
A0A6U4KQK6_9STRA1.160e-11066.67Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
A0A7S4KAF0_9STRA2.400e-10861.76Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
A0A7S2Y3D2_9STRA2.760e-10763.84Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
B5Y5N6_PHATC2.630e-10662.08Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1260contigF-serratus_M_contig1260:272800..276912 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score382.1
Seed ortholog evalue1.8e-103
Seed eggNOG ortholog2880.D8LSF2
Preferred nameSDH1
KEGG rclassRC00045
KEGG koko:K00234
KEGG ReactionR02164
KEGG Pathwayko00020,ko00190,ko01100,ko01110,ko01120,ko01130,ko01200,ko04714,ko04932,ko05010,ko05012,ko05016,map00020,map00190,map01100,map01110,map01120,map01130,map01200,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00009,M00011,M00148
Hectar predicted targeting categoryother localisation
GOsGO:0000104,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005749,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006119,GO:0006121,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008177,GO:0009055,GO:0009060,GO:0009061,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009314,GO:0009416,GO:0009453,GO:0009605,GO:0009628,GO:0009987,GO:0015980,GO:0016020,GO:0016310,GO:0016491,GO:0016627,GO:0016635,GO:0016999,GO:0017144,GO:0019637,GO:0019693,GO:0019752,GO:0019866,GO:0022900,GO:0022904,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0034641,GO:0040011,GO:0042330,GO:0042331,GO:0042773,GO:0042775,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045257,GO:0045273,GO:0045281,GO:0045283,GO:0045333,GO:0046034,GO:0046483,GO:0046956,GO:0050896,GO:0052128,GO:0055086,GO:0055114,GO:0070469,GO:0071704,GO:0072350,GO:0072521,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1902494,GO:1990204
EggNOG free text desc.anaerobic respiration
EggNOG OGsCOG1053@1,KOG2403@2759
Ec32 ortholog descriptionSDH1, succinate dehydrogenase subunit 1
Ec32 orthologEc-21_003470.1
EC1.3.5.1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons6
Model size851
Cds size687
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1260.1969.1prot_F-serratus_M_contig1260.1969.1Fucus serratus malepolypeptideF-serratus_M_contig1260 272889..276837 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929195.8869414-UTR-F-serratus_M_contig1260:272799..2728881622929195.8869414-UTR-F-serratus_M_contig1260:272799..272888Fucus serratus maleUTRF-serratus_M_contig1260 272800..272888 -
1690962745.179217-UTR-F-serratus_M_contig1260:272799..2728881690962745.179217-UTR-F-serratus_M_contig1260:272799..272888Fucus serratus maleUTRF-serratus_M_contig1260 272800..272888 -
1622929196.00064-UTR-F-serratus_M_contig1260:276837..2769121622929196.00064-UTR-F-serratus_M_contig1260:276837..276912Fucus serratus maleUTRF-serratus_M_contig1260 276838..276912 -
1690962745.2536287-UTR-F-serratus_M_contig1260:276837..2769121690962745.2536287-UTR-F-serratus_M_contig1260:276837..276912Fucus serratus maleUTRF-serratus_M_contig1260 276838..276912 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929195.900152-CDS-F-serratus_M_contig1260:272888..2729691622929195.900152-CDS-F-serratus_M_contig1260:272888..272969Fucus serratus maleCDSF-serratus_M_contig1260 272889..272969 -
1690962745.1909614-CDS-F-serratus_M_contig1260:272888..2729691690962745.1909614-CDS-F-serratus_M_contig1260:272888..272969Fucus serratus maleCDSF-serratus_M_contig1260 272889..272969 -
1622929195.9153137-CDS-F-serratus_M_contig1260:273617..2738191622929195.9153137-CDS-F-serratus_M_contig1260:273617..273819Fucus serratus maleCDSF-serratus_M_contig1260 273618..273819 -
1690962745.2002785-CDS-F-serratus_M_contig1260:273617..2738191690962745.2002785-CDS-F-serratus_M_contig1260:273617..273819Fucus serratus maleCDSF-serratus_M_contig1260 273618..273819 -
1622929195.9312427-CDS-F-serratus_M_contig1260:274462..2745151622929195.9312427-CDS-F-serratus_M_contig1260:274462..274515Fucus serratus maleCDSF-serratus_M_contig1260 274463..274515 -
1690962745.2108629-CDS-F-serratus_M_contig1260:274462..2745151690962745.2108629-CDS-F-serratus_M_contig1260:274462..274515Fucus serratus maleCDSF-serratus_M_contig1260 274463..274515 -
1622929195.9481118-CDS-F-serratus_M_contig1260:275071..2752391622929195.9481118-CDS-F-serratus_M_contig1260:275071..275239Fucus serratus maleCDSF-serratus_M_contig1260 275072..275239 -
1690962745.2214108-CDS-F-serratus_M_contig1260:275071..2752391690962745.2214108-CDS-F-serratus_M_contig1260:275071..275239Fucus serratus maleCDSF-serratus_M_contig1260 275072..275239 -
1622929195.9674423-CDS-F-serratus_M_contig1260:275776..2759091622929195.9674423-CDS-F-serratus_M_contig1260:275776..275909Fucus serratus maleCDSF-serratus_M_contig1260 275777..275909 -
1690962745.232447-CDS-F-serratus_M_contig1260:275776..2759091690962745.232447-CDS-F-serratus_M_contig1260:275776..275909Fucus serratus maleCDSF-serratus_M_contig1260 275777..275909 -
1622929195.9824607-CDS-F-serratus_M_contig1260:276787..2768371622929195.9824607-CDS-F-serratus_M_contig1260:276787..276837Fucus serratus maleCDSF-serratus_M_contig1260 276788..276837 -
1690962745.2441385-CDS-F-serratus_M_contig1260:276787..2768371690962745.2441385-CDS-F-serratus_M_contig1260:276787..276837Fucus serratus maleCDSF-serratus_M_contig1260 276788..276837 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1260.1969.1

>prot_F-serratus_M_contig1260.1969.1 ID=prot_F-serratus_M_contig1260.1969.1|Name=mRNA_F-serratus_M_contig1260.1969.1|organism=Fucus serratus male|type=polypeptide|length=229bp
MGGIPTNHLGEVGACTFTAIVPACASVHGANRLGANSLLDLVVFGRACAL
RIADIAKPGDKVAGAPKSETEKSIASLDRTRFADGATPVAELRLKLQKEM
QDHAAVYRTQEVLAEGVRRVDGVVQEFKDINVADKSLIWNTNLIEAMELE
NLLSNAACTIHAAEARKESRGAHAREDFPDRLDDEWMKHSLTYFDYETGK
TKVEYRPVHNFTLDEEECNTVAPFKRVY*
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mRNA from alignment at F-serratus_M_contig1260:272800..276912-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1260.1969.1 ID=mRNA_F-serratus_M_contig1260.1969.1|Name=mRNA_F-serratus_M_contig1260.1969.1|organism=Fucus serratus male|type=mRNA|length=4113bp|location=Sequence derived from alignment at F-serratus_M_contig1260:272800..276912- (Fucus serratus male)
GAGACGGCTCAGATCTTCTCTGGCGTGGATGTGACCAAGGAGCCCATCCC
GGTGCTCCCCACCGTGCACTACAACATGGGAGGCATTCCCACCAACCACC
TCGGCGAGGTAGGTGCATGCACCTTGTTGCGGCGGCCCTTCCTTTTTTCC
TGCCCGCGATTCTAGGTCATCCTGTTCGGCTCATTCCGCTGATATCTTTT
TAGTATTGTTGTGGTTGAGATATCATTCCGATGTGTTTGAATGTAGCCAT
CGGCGATGTGTCTGGACTCATGCGTGTGTATCCCTCAAGTCTAAAAGTAT
TCAGCTCAAGTTTTTATCAATGCTGTAGTATAAAGAGTTTAGGGGCCCTA
TTTTCGTTTTTATTAGTGTTGCAGTATGGAGAGTTTTCTCCCACGATAAT
CCATCCAACTTGTGTTTTGATGAGGAGAGTGGGCGGCTGGGTGGATTATA
GGAAATGTATGATAATGTAATATATGCATATGTATATGTTTGCTGGAATG
ATATCGCTTTCTTTGGGGAGTTTCGTTCTATCCTCTGCAGGTATTACGCT
GGACAAGGAAAATGCCCGCGCGATAATATACTGCTTCTTTGAAAATAATA
ACATGATAACAAGCATCCATAAACTGCTTTATTGCGCCTCATCCCTTTCG
CCAGGTTACGTATAGTATTTCTGAGGCGTTTCCCAAGTTCTGTCTACCGC
TTTTCCCCGCTTTCGCTAACACACACACACACACACACACACACACCGTA
ATAGGTATCATTGATCCCCTCTCGGGAGGATCAATGCGAGTGGCATAGAA
TGACTAGGATGACAGGGCCGGATTGCGTGGTTATGTGCAATTTAATAAAT
ACACACACACACACACACACACACACACACACACACACACACACACACAC
ACACAGGTGATCAAGCCCAAGAAAATCGCGGACGGCACCATAGAGCACGA
ATGACTAGGATGACAATTGCGTCCCCGGCCTCTTCGCGGACGGCACCATA
GAGCACGGCAATCGTCCCCGCCTGCGCATCCGTGCACGGGGCCAACCGCC
TCGGGGCCAACTCTCTCCTCGACCTCGTCGTGTTCGGCCGAGCGTGCGCG
CTCCGTATCGCTGATATTGCCAAGCCCGGAGACAAAGTAGGTGTCGATGT
GGTTGGAGGGGGGAAGAGGGTCATGCGGTATCGAAGGGGGGGGGAGATAA
GGGGAATGTTTGGGCCTCTGGTACATTTGGCATTTGAACGGTTAAATTAA
TGCGATGTTCTTTACTATGTAGTAGTACAGTAATGGTGTACGCCTTGGCG
TATCCGAGCTGTATGGTGTGGTGACCAAGAATGTGTCGGGCAAGGAACGC
GATTGCCGAGCGTTGTGACGCCGTTTTGGTGGTATATAGCTGAGGGTTGT
TGCATATGGATTTTTTTTTGGAAAGCTGTGTTACCCCCTCCCTCTCCATA
TCCCTCTCTTTTAATATTGCTTAGATTAGGTCACATACCCACGCACGCAC
GCCATATTGTCCGCGATTTTGAAAAAACACTTGAAAAAAAACATCTGACG
GAAAGCACACCATCACTCCGCATTTACCCATCAAACGTCACCTCTGCCCG
GGGCACGTTCGGAACACCCCTGCGACCTGACCAAACGGACGCGACGGGCT
CGACGTAATTTTCACCGGGGAAGGTGGCCGGGGCGCCCAAGTCTGAGACA
GAGAAGAGCATCGCGTCCCTGGATCGGACCCGCTTCGCCGACGGGGCCAC
GCCCGTGGCCGAGCTTCGCCTCAAGCTGCAGAAGGAGATGCAGGACCACG
CGGCGGTGTACAGGACGCAGGAAGTGCTCGCGGAGGGAGTGGTAAGGACG
GGGGATGAGGGGCATGTGTATCCCCGGTAGGGGGGGTGTTTGATTTATCC
CCGGTTGGAAAGGTGTTCGATGTGTCCCCGGGAATTGCACCAAGAGAGGT
GAATGACGGAAAATGTGTTTTCGATATATCTCCGGGGATGAGACGACGCA
GGTTATCGCGGAGACTTGATGCGGGAACACGAGCGAAGTAGCGTAGCTTC
TTCTTCGTCGTGAGGAAAACAAACCTAGCAAAGCAAGCAAGCCAAACGCG
ACCCATTGCATACCGTCTGCCAACCAGGTGCCCTTTGTTTTTTACGAAAA
ACACGACGTGAAAGCCGTGGCGTGAGTGCGGCGAGTCCGCTGCCTACTTT
AGAAACTTGCGGGCGGTCGTGGCCGAAGGATGTTCCCGCGAGGAACTATA
GTTGAATGATCCGCTTCGATCCGGTCCGCTCGTCCGTAGCCACGGTCTCA
AGTGCGTTGCTCGCCGTCCCCACCCCGCCCTCTTCCCCTATGTCTCCTTG
TCGAACTCCCGGCCTGGCCCGCATCGTGGGCACGCTCACTCCGACAGAGG
AGGGTAGACGGTGTTGTGCAGGAATTCAAAGACATCAACGTTGCCGATAA
GTGAGTGAAAGCCTCCCTCCATGAAACGGCTTAACGCGTGTATTAAGCCC
CCCGCAGATGATACATGCGTGCGTGTGTTGTGGTATGTGGGTGCGCGCAC
GCAAGCTTGTTTTGCGTTGTGTATGTTAACGTGTGTGTGTCCTCGCACGG
CGGGAAACCGAAGTCGCAGACGATTCATTTTTGTAGGCGATAAGGTGTGC
GAAACGCGTGGCTCCGCAGAATCGGCGAACGGATGCACCAAGATGCAAAG
CGCTGTCTTGTGTGGTGTGGTGTGTTGTGGTGTTTTATGTTTTCCCTATT
TTTAAGCCGCCTCGATCGTGGGGTTAAAATACGTAGACACGTGTGGGAAA
CTATTCTCGTTTCCGTCCTTATATTTCTAGAGAGGAGGAATTCGAGAGGG
GCGGGGTAGGTACGCGGGTATACAGCGTATGGGTGAGCGGCTGTTATGCG
GTTTTGGCGCTTACTATTTCTATCTTCCGCGCCCGCGGCCCCCTTTCTCT
TTTCTAACCCCGATTGGACGCCCTCCAATCGACCGATTAACCGACGATTC
TGAATGACGCCAAACCGAATATTAAACGGAACCGAATCTTTTAACCGAAT
CCACATCAAAACCCAACCGACCCGGGGTTGCGGGCGGAAATAGGTCGCTG
ATCTGGAACACTAACCTGATCGAGGCGATGGAGCTGGAGAACCTCCTCTC
TAACGCGGCGTGCACCATCCACGCGGCTGAGGCCAGAAAGGAGAGTCGTG
GCGCCCACGCCCGAGAGGACTTCCCGGACCGCCTGGACGACGAGTGGATG
AAGCACAGCCTCACGTACTTTGACTACGAAACGGGAAAAACAAAGGTCAG
GCATTTCGCGTGTGTGTGTGGCTGTGTGTGGCTGTGTAGAGAGGACAACT
AGTCATGGATTTAATTTTCGCGTCCGACTTGATGGAGTGGACGTGTTTTC
GCCAGGGCACTTTTCGAAAGCAGTTCAGCCTGCGTTGTCGTTTCGATAAG
TGTTATAGTGTGTTGTGGTCAGAAGAGAGATCGCTGGCGAGGCGCATCGT
GTCGGTTTCCCGCAGGAACACAGCTCGCTTACAAATACGTTGCTTGATGG
TAAAGTTTTCTCGCCCGGTGAAAGAGATCTTTCTTGCTCGGTGCTTTGGT
GTACACTGTTAGAACGTCTCGGGGGTCTTTCGAGGCAGTCGGCTTCCTCC
TTCTTTAACACTCACACGAGGCAAGCTATTTTTCAATCCCTCCGTAGACA
TGCCCTTTTCTCGTCGAGCTCCTCGCCGCGGCAGCCCTGAGCGCATGCCC
TAGGACCAGGCGGCGAAGCGCTCCCCTCCCCCGCCCCCCCTCCCCACATA
CACGCACGCACACACACACTTACTTCCCGGTGCCTTGAATCTTGCTCTTT
GAATCTGATGCGTTCTTTTTTATTTTTTCCTCCCGTTTCGGGTGGTTGCC
GCTGCTGCTGCCGCGAACTGGCGACGCCTCCTCTGGTTGGCAGGTGGAGT
ATCGCCCGGTGCACAATTTCACGCTCGACGAGGAGGAGTGCAACACGGTT
GCTCCGTTTAAACGCGTCTACTAATATGAGGTTGTCGTCTCTTAACGTAG
CGTGAGATGTGGAAAAAATAATCTAAAAGTTGCAAGCGTGCGTGTGTTTT
ATGTGTGTGTGAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1260:272800..276912-

>mRNA_F-serratus_M_contig1260.1969.1 ID=mRNA_F-serratus_M_contig1260.1969.1|Name=mRNA_F-serratus_M_contig1260.1969.1|organism=Fucus serratus male|type=CDS|length=1374bp|location=Sequence derived from alignment at F-serratus_M_contig1260:272800..276912- (Fucus serratus male)
ATGGGAGGCATTCCCACCAACCACCTCGGCGAGGTAGGTGCATGCACCTT
ATGGGAGGCATTCCCACCAACCACCTCGGCGAGGTAGGTGCATGCACCTT
CACGGCAATCGTCCCCGCCTGCGCATCCGTGCACGGGGCCAACCGCCTCG
GGGCCAACTCTCTCCTCGACCTCGTCGTGTTCGGCCGAGCGTGCGCGCTC
CGTATCGCTGATATTGCCAAGCCCGGAGACAAACACGGCAATCGTCCCCG
CCTGCGCATCCGTGCACGGGGCCAACCGCCTCGGGGCCAACTCTCTCCTC
GACCTCGTCGTGTTCGGCCGAGCGTGCGCGCTCCGTATCGCTGATATTGC
CAAGCCCGGAGACAAAGTGGCCGGGGCGCCCAAGTCTGAGACAGAGAAGA
GCATCGCGTCCCTGGATCGGACCCGCTTCGCCGACGGGGCCACGCCCGTG
GCCGAGCTTCGCCTCAAGCTGCAGAAGGAGATGCAGGACCACGCGGCGGT
GTACAGGACGCAGGAAGTGCTCGCGGAGGGAGTGGTGGCCGGGGCGCCCA
AGTCTGAGACAGAGAAGAGCATCGCGTCCCTGGATCGGACCCGCTTCGCC
GACGGGGCCACGCCCGTGGCCGAGCTTCGCCTCAAGCTGCAGAAGGAGAT
GCAGGACCACGCGGCGGTGTACAGGACGCAGGAAGTGCTCGCGGAGGGAG
TGAGGAGGGTAGACGGTGTTGTGCAGGAATTCAAAGACATCAACGTTGCC
GATAAAGGAGGGTAGACGGTGTTGTGCAGGAATTCAAAGACATCAACGTT
GCCGATAAGTCGCTGATCTGGAACACTAACCTGATCGAGGCGATGGAGCT
GGAGAACCTCCTCTCTAACGCGGCGTGCACCATCCACGCGGCTGAGGCCA
GAAAGGAGAGTCGTGGCGCCCACGCCCGAGAGGACTTCCCGGACCGCCTG
GACGACGAGTGGATGAAGCACAGCCTCACGTACTTTGACTACGAAACGGG
AAAAACAAAGGTCGCTGATCTGGAACACTAACCTGATCGAGGCGATGGAG
CTGGAGAACCTCCTCTCTAACGCGGCGTGCACCATCCACGCGGCTGAGGC
CAGAAAGGAGAGTCGTGGCGCCCACGCCCGAGAGGACTTCCCGGACCGCC
TGGACGACGAGTGGATGAAGCACAGCCTCACGTACTTTGACTACGAAACG
GGAAAAACAAAGGTGGAGTATCGCCCGGTGCACAATTTCACGCTCGACGA
GGAGGAGTGCAACACGGTTGCTCCGTTTAAACGCGTCTACTAAGTGGAGT
ATCGCCCGGTGCACAATTTCACGCTCGACGAGGAGGAGTGCAACACGGTT
GCTCCGTTTAAACGCGTCTACTAA
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