mRNA_F-serratus_M_contig1260.1965.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1260.1965.1
Unique NamemRNA_F-serratus_M_contig1260.1965.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1260.1965.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1260contigF-serratus_M_contig1260:140244..144545 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.1
Seed ortholog evalue7.3e-25
Seed eggNOG ortholog2880.D7FUD7
KEGG koko:K06867,ko:K07901,ko:K10407
KEGG Pathwayko04144,ko04152,ko04530,ko04972,ko05132,map04144,map04152,map04530,map04972,map05132
Hectar predicted targeting categoryother localisation
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,COG0666@1,KOG0504@2759,KOG1840@2759,KOG4658@1,KOG4658@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03036,ko04031,ko04131,ko04147,ko04812
Exons5
Model size3052
Cds size1482
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929195.401122-UTR-F-serratus_M_contig1260:140243..1416841622929195.401122-UTR-F-serratus_M_contig1260:140243..141684Fucus serratus maleUTRF-serratus_M_contig1260 140244..141684 -
1690962744.9595637-UTR-F-serratus_M_contig1260:140243..1416841690962744.9595637-UTR-F-serratus_M_contig1260:140243..141684Fucus serratus maleUTRF-serratus_M_contig1260 140244..141684 -
1622929195.5400538-UTR-F-serratus_M_contig1260:144416..1445451622929195.5400538-UTR-F-serratus_M_contig1260:144416..144545Fucus serratus maleUTRF-serratus_M_contig1260 144417..144545 -
1690962745.0251167-UTR-F-serratus_M_contig1260:144416..1445451690962745.0251167-UTR-F-serratus_M_contig1260:144416..144545Fucus serratus maleUTRF-serratus_M_contig1260 144417..144545 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929195.4202592-CDS-F-serratus_M_contig1260:141684..1421401622929195.4202592-CDS-F-serratus_M_contig1260:141684..142140Fucus serratus maleCDSF-serratus_M_contig1260 141685..142140 -
1690962744.973128-CDS-F-serratus_M_contig1260:141684..1421401690962744.973128-CDS-F-serratus_M_contig1260:141684..142140Fucus serratus maleCDSF-serratus_M_contig1260 141685..142140 -
1622929195.4391067-CDS-F-serratus_M_contig1260:142531..1430281622929195.4391067-CDS-F-serratus_M_contig1260:142531..143028Fucus serratus maleCDSF-serratus_M_contig1260 142532..143028 -
1690962744.9808497-CDS-F-serratus_M_contig1260:142531..1430281690962744.9808497-CDS-F-serratus_M_contig1260:142531..143028Fucus serratus maleCDSF-serratus_M_contig1260 142532..143028 -
1622929195.4625127-CDS-F-serratus_M_contig1260:143240..1434741622929195.4625127-CDS-F-serratus_M_contig1260:143240..143474Fucus serratus maleCDSF-serratus_M_contig1260 143241..143474 -
1690962744.9888287-CDS-F-serratus_M_contig1260:143240..1434741690962744.9888287-CDS-F-serratus_M_contig1260:143240..143474Fucus serratus maleCDSF-serratus_M_contig1260 143241..143474 -
1622929195.4983983-CDS-F-serratus_M_contig1260:143816..1439101622929195.4983983-CDS-F-serratus_M_contig1260:143816..143910Fucus serratus maleCDSF-serratus_M_contig1260 143817..143910 -
1690962744.9969847-CDS-F-serratus_M_contig1260:143816..1439101690962744.9969847-CDS-F-serratus_M_contig1260:143816..143910Fucus serratus maleCDSF-serratus_M_contig1260 143817..143910 -
1622929195.5205848-CDS-F-serratus_M_contig1260:144215..1444161622929195.5205848-CDS-F-serratus_M_contig1260:144215..144416Fucus serratus maleCDSF-serratus_M_contig1260 144216..144416 -
1690962745.014045-CDS-F-serratus_M_contig1260:144215..1444161690962745.014045-CDS-F-serratus_M_contig1260:144215..144416Fucus serratus maleCDSF-serratus_M_contig1260 144216..144416 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1260.1965.1prot_F-serratus_M_contig1260.1965.1Fucus serratus malepolypeptideF-serratus_M_contig1260 141685..144416 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1260.1965.1

>prot_F-serratus_M_contig1260.1965.1 ID=prot_F-serratus_M_contig1260.1965.1|Name=mRNA_F-serratus_M_contig1260.1965.1|organism=Fucus serratus male|type=polypeptide|length=494bp
MLILATRETFLVPFDPFLHFLLQVKELISGEGDGGFELFSTANGTDRVEM
FEAVVTSIISDKFTEEEVAKKHKRPNTPGHHALEKLVFTEYEDQFYPKGI
TKLLPGPHVQPDAGGDSTQSGKNKIKTIDIFTRGVLSFLPSLSLCQCLRL
NQAHCNSVRTYLSDVVVDAESGQPWTVPVDMLTLAGDSSKLTSAEYGVSI
EGNNEDLRHLNALLVPAPDFLDIGGEIYISLSLVLRCRWKRHSPNGEAWK
VSFSMHNIRGAKADFVGAVSIFCRPSGSSEGAWTLVSNEVKVNDADQALG
EDLVAHATVTGFSDLIATVKKADAGKRSLGYLAKPISGVIVKMWSNRVHL
HNASTKTLGYVQYLPTLIPTSRSGQVELPVVGGGGASSSEFIPRDLRARI
HDGYVEPWPRDQHGDYQQSSCPIPEYLETQRRGMGICLVVFDEDGDNARR
LRQIDCDAGTVIILLDEIHQRRTVQKRYLEQIQQQMQEGRVES*
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mRNA from alignment at F-serratus_M_contig1260:140244..144545-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1260.1965.1 ID=mRNA_F-serratus_M_contig1260.1965.1|Name=mRNA_F-serratus_M_contig1260.1965.1|organism=Fucus serratus male|type=mRNA|length=4302bp|location=Sequence derived from alignment at F-serratus_M_contig1260:140244..144545- (Fucus serratus male)
CGGATTTTCGAGCTAGTGCATCCTTTGCTGTGAAGGTTCTCTTGGTCAGG
TCAACGGTAGATAAAGGATTACGTACACGAAGGGCCACCAATGTGGAAAG
ACATTTAAACGCTTTCCCGCATAGATTCAATGCTGATACTTGCAACTAGG
GAAACTTTCCTCGTTCCATTTGATCCCTTTCTCCATTTCCTGCTCCAGGT
AAAGGAACTTATTTCAGGTGAAGGCGATGGCGGTTTCGAGTTGTTCTCTA
CGGCGAATGGAACCGATAGGGTGGAAATGTTTGAGGCGGTCGTGACCTCT
ATCATCTCTGACAAGTTCACCGAGGAAGAGGTAAGTCGATGTAACTTAGT
CGAAGGTGCTTAAGCACGATGTGTATGTGAGTGATTGAGAAAAATATTTT
ACCACGTACCCAGGGAGAACACCAGAGCAAAGATGGGGCAGGGGCTGGCA
CTGGGACTGGACAGGATCGTCACACGCCAACTGGTCATGTTCTAGTATAT
CTTTTATTTTCTCTTTCCCAGTTGCTCCGAAACTGCCCACAAATGAAAGA
CTGGACCAGGACTGAACCTTTTGTGTAAAAACCCAGGACAATCCAAAACT
AAGCTAGCCACTCGCGAACGTTATCTGCAACATAGGTCGCTAAGAAACAC
AAACGACCAAATACACCTGGGCACCACGCCCTGGAGAAACTCGTCTTCAC
CGAATACGAAGACCAATTTTACCCTAAAGGTGTGCGGCACAGTAAGTTCA
TTACGACCACGAACTGGGGGCTCGTGGGGTATCTTCACAATATTCACCTC
ACGGGCATAAATAATTTCATCTCTCAGTTAGCGACTTTACTTAGCAAATA
TTGCCCACAGGCAGCGCTAGAGTACCTCGTAAAAAAATAAGCGTCATATC
AATATGATGAACCCTGATGTAATATGCCTTACTCGACCGGCACCTGCAGG
GAGATTGCTGTAAAATTGCCCTTCTCGTCATAACATTCAATTAATAGTTC
AAGTTGCGGCGTAGGGACGTGAAAATTTTAAATAAGGACACCTCTTAACA
TTGGGCCACGCTGTCTTTCAGGGATCACAAAGTTGCTTCCGGGTCCGCAC
GTTCAGCCAGACGCTGGAGGGGACTCAACTCAGAGCGGCAAAAACAAGAT
TAAAACAATCGACATCTTCACGAGGGGGGTCCTCAGCTTTCTACCATCTT
TGTCGCTTTGTCAATGCTTGCGGCTGAACCAAGCACACTGCAACAGTGTC
CGGACATATCTGTCGGATGTTGTCGTCGACGCCGAAAGTGGTCAGCCCTG
GACAGGTATCTAGGACGACAGCTAAATTATACTCTTCTGCCCTTATTGGT
TCGAGTATAGAAGTCAAATATCAAATTGCTTAACGTGGACTGTTTTGGTT
CGTATAAAAAATCGTGTCGAGAGTGTGAACTTCGACCAGCGTGTAGATGG
AGACGTTCTCCACCTGCCTCCTTCAGTGGGTGACCTAGCGCCGCCAACAC
CATACTTTTCCCCCCAGTACCCGTGGACATGCTGACGCTAGCAGGTGACT
CTTCTAAGCTGACGTCGGCCGAATACGGTGTAAGTATTGAGGGAAATAAC
GAAGATCTACGACACCTGAATGCACTGCTTGTCCCTGCGCCAGACTTCCT
CGACATTGGTGGCGAAATATATATCAGCTTGTCCCTGGTTCTTCGATGCC
GATGGAAAAGACATTCACCTAATGGGGAAGCGTGGAAAGTCAGTTTTTCT
ATGCACAACATCCGCGGTGCCAAAGCAGACTTCGTGGGCGCGGTTTCTAT
CTTTTGTAGACCAAGCGGTAGTTCTGAGGGTGCGTGGACGTTAGTGAGTA
ACGAGGTCAAGGTGAACGATGCCGACCAGGCGTTAGGTGAAGACTTAGTG
GCGCATGCAACGGTTACGGGCTTCTCCGACCTAATCGCTACGGTCAAGAA
GGCGGATGCAGGCAAACGATCATTGGGTTACCTTGCCAAGCCGATCAGCG
GGGTGATAGTGAAGGTAAGCATGCTGAAGGTTTCCGTGAACGCTGTAAAC
GTTTTCAAATCAACACCTGTAAGGTTCTCCTCAATACATTTGAAGTTTCG
CTTCCGTTCTGGTGTCTTTTGAGAGGGGTTATATTTTTAAAATAGGCGGA
GAGGGGAAGTATTTATCTAACATAGAACCCTTCATTTGAATCTTAAAGGT
TCTCAGTTGAAAATATTATCAACCGTCACGTCCATCAGACAAACGACATA
CATGCCAGGGCTTTCTGTTCAGTGCCGTCTACCCCCACACACAAGTAAAT
GCCCTAGTTTCTCAGGTGTTTCAACATTATTTCCTTCAAAAACCGCTAAA
CAAAGCTATACGCCGTTCGCCAATCGTTTTTGTCAACCGTGCTCAACCCC
TGCAGATGTGGTCTAACAGGGTACACTTGCACAACGCATCTACCAAGACG
TTAGGATACGTCCAGTACTTGCCTACACTGATACCAACATCCAGATCAGG
GCAAGTTGAGCTACCCGTGGTTGGTGGGGGGGGGGCTTCGAGCTCGGAGT
TCATACCGCGAGACCTCCGAGCACGAATCCATGACGGATACGTAGAGCCG
TGGCCCAGAGATCAGCACGGGGATTACCAACAAAGTTCTTGCCCTATCCC
CGAATACCTCGAAACACAGCGTCGCGGGATGGGAATCTGTTTGGTCGTAT
TCGACGAGGATGGGGACAATGCGCGCCGCTTGAGACAGATTGACTGCGAT
GCGGGGACAGTTATCATCCTCTTAGATGAAATCCACCAAAGGCGAACAGT
GCAGAAGAGGTACCTTGAGCAGATACAGCAGCAGATGCAGGAGGGTAGGG
TAGAAAGTTGAAACTGCGTGAATCGTGACCCTCATATTGACCAGGCCGGC
ATGATCAGCTCGTCGACAGTTGTTTTGAGGTGAGAAGAATTTAGGTTCAT
GGCGCACCCTTCATTCACGAGCTGACGTTGTACCATCTGCTCTGCACTGG
TTTCCTATCCAACCGCCGAATAGCATGTAAGCTTCGTAGAAGAGAACGAG
GAGCTAATTAGAGTCCGCCTGATCTCACCACATAAATGATTGGATAGGTA
TCCGACCGCAAAAAATGGGTAGATTACATAATACCTGGTATTTTACTCGG
TATCAACCAAAAATGTGTTATTTTTACCATTTGGGGTAACACCTCAGTAT
AGTATTGAGTAGCGGATGCCAGCGGGAAGGATGTGGTACCTGACGAGGAT
GGAGAGGTCCGGGAAGGTGACGCAGGTAATCTAGTAGGAAGTGTGATTGA
TTTCGCGACCAGGCGTCAGAAGATCTGGAAAATAATTTAATGATTCATCC
TTATATATGAAGACATTCGTGGAGGTGTTATAATAAACTACGGGAGCAAT
TGTGAAGTTTGACAGGGGCGATTTGCAATACTTCCGCGATTGCAGTATTA
ATGCCCGTCGCAATCTATAGTATGCTATTAATAAAATAAGTAATCGATGG
TTTTCGCGAGTATTTATATTTAAAACAACACTTGATACTACGAAGGGGAT
TATATTTGCTATACCGAAGATACCATCAAGACTGTCTTGGATGTTTTTGT
GTTCAGTTTGCACATATGAAGCGAAGGTTTTCGGAATGTTCTCGTAATAA
CGCTGCAAATCGGAGGAACATATGGAAAAGTTCCTGATTTTAGTACTTAA
CTCAGAAAAAAAGCGTCCGGAGGAATCAGTCTCTTGAATGGGGTTCAACT
TTAGATTCAGGAACAACTTGAGTGTTCGCTCACAGTACTACGATAGCTCA
GAGGGAAAGCACGAGGCTCATAGCCCCATTCGAGAAGGCCTTGCCCTCTG
CTCGTGGCATTCTTAGCGCTCTGAATCTGCGTAATGGAGTCTAGGTGCCG
ACCTCGCTGTATATTGAGTCGATTGGTGAGTATCTGCCCGTTTTCTTATG
CATACCGCGCAAGCGGGGCGTTTATTCCCCCTATCTTCTGTAATAGATAC
TCGCAAGAAACAAGAATCGATTGCTTCCGTAACTTACTGCTGTTAGTGTT
TGTGCTACCGCTGTAGGGTTGTCGTGGCGTTCTGTTCCTGCTGTAGTGAT
GTTGGAGAGAGGTAAAAAGCGAGGATAGTAGGCGACAACGTGAACGGTAA
TAAATTTCGTGGTCGACGTCACGCGGATTAGTTCCTCTTGATCAGTTCCT
AGGGGAACCTTGATTATCTTCTCCCTTATTCTGTAGAGGAGAGAGAGCAC
ATAGCTAAGCAAGAAGGAGCTCAAGGCCTTTTTCAAACACGAATGTTGTT
TA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1260:140244..144545-

>mRNA_F-serratus_M_contig1260.1965.1 ID=mRNA_F-serratus_M_contig1260.1965.1|Name=mRNA_F-serratus_M_contig1260.1965.1|organism=Fucus serratus male|type=CDS|length=2964bp|location=Sequence derived from alignment at F-serratus_M_contig1260:140244..144545- (Fucus serratus male)
ATGCTGATACTTGCAACTAGGGAAACTTTCCTCGTTCCATTTGATCCCTT
TCTCCATTTCCTGCTCCAGGTAAAGGAACTTATTTCAGGTGAAGGCGATG
GCGGTTTCGAGTTGTTCTCTACGGCGAATGGAACCGATAGGGTGGAAATG
TTTGAGGCGGTCGTGACCTCTATCATCTCTGACAAGTTCACCGAGGAAGA
GATGCTGATACTTGCAACTAGGGAAACTTTCCTCGTTCCATTTGATCCCT
TTCTCCATTTCCTGCTCCAGGTAAAGGAACTTATTTCAGGTGAAGGCGAT
GGCGGTTTCGAGTTGTTCTCTACGGCGAATGGAACCGATAGGGTGGAAAT
GTTTGAGGCGGTCGTGACCTCTATCATCTCTGACAAGTTCACCGAGGAAG
AGGTCGCTAAGAAACACAAACGACCAAATACACCTGGGCACCACGCCCTG
GAGAAACTCGTCTTCACCGAATACGAAGACCAATTTTACCCTAAAGGTCG
CTAAGAAACACAAACGACCAAATACACCTGGGCACCACGCCCTGGAGAAA
CTCGTCTTCACCGAATACGAAGACCAATTTTACCCTAAAGGGATCACAAA
GTTGCTTCCGGGTCCGCACGTTCAGCCAGACGCTGGAGGGGACTCAACTC
AGAGCGGCAAAAACAAGATTAAAACAATCGACATCTTCACGAGGGGGGTC
CTCAGCTTTCTACCATCTTTGTCGCTTTGTCAATGCTTGCGGCTGAACCA
AGCACACTGCAACAGTGTCCGGACATATCTGTCGGATGTTGTCGTCGACG
CCGAAAGTGGTCAGCCCTGGACAGGGATCACAAAGTTGCTTCCGGGTCCG
CACGTTCAGCCAGACGCTGGAGGGGACTCAACTCAGAGCGGCAAAAACAA
GATTAAAACAATCGACATCTTCACGAGGGGGGTCCTCAGCTTTCTACCAT
CTTTGTCGCTTTGTCAATGCTTGCGGCTGAACCAAGCACACTGCAACAGT
GTCCGGACATATCTGTCGGATGTTGTCGTCGACGCCGAAAGTGGTCAGCC
CTGGACAGTACCCGTGGACATGCTGACGCTAGCAGGTGACTCTTCTAAGC
TGACGTCGGCCGAATACGGTGTAAGTATTGAGGGAAATAACGAAGATCTA
CGACACCTGAATGCACTGCTTGTCCCTGCGCCAGACTTCCTCGACATTGG
TGGCGAAATATATATCAGCTTGTCCCTGGTTCTTCGATGCCGATGGAAAA
GACATTCACCTAATGGGGAAGCGTGGAAAGTCAGTTTTTCTATGCACAAC
ATCCGCGGTGCCAAAGCAGACTTCGTGGGCGCGGTTTCTATCTTTTGTAG
ACCAAGCGGTAGTTCTGAGGGTGCGTGGACGTTAGTGAGTAACGAGGTCA
AGGTGAACGATGCCGACCAGGCGTTAGGTGAAGACTTAGTGGCGCATGCA
ACGGTTACGGGCTTCTCCGACCTAATCGCTACGGTCAAGAAGGCGGATGC
AGGCAAACGATCATTGGGTTACCTTGCCAAGCCGATCAGCGGGGTGATAG
TGAAGTACCCGTGGACATGCTGACGCTAGCAGGTGACTCTTCTAAGCTGA
CGTCGGCCGAATACGGTGTAAGTATTGAGGGAAATAACGAAGATCTACGA
CACCTGAATGCACTGCTTGTCCCTGCGCCAGACTTCCTCGACATTGGTGG
CGAAATATATATCAGCTTGTCCCTGGTTCTTCGATGCCGATGGAAAAGAC
ATTCACCTAATGGGGAAGCGTGGAAAGTCAGTTTTTCTATGCACAACATC
CGCGGTGCCAAAGCAGACTTCGTGGGCGCGGTTTCTATCTTTTGTAGACC
AAGCGGTAGTTCTGAGGGTGCGTGGACGTTAGTGAGTAACGAGGTCAAGG
TGAACGATGCCGACCAGGCGTTAGGTGAAGACTTAGTGGCGCATGCAACG
GTTACGGGCTTCTCCGACCTAATCGCTACGGTCAAGAAGGCGGATGCAGG
CAAACGATCATTGGGTTACCTTGCCAAGCCGATCAGCGGGGTGATAGTGA
AGATGTGGTCTAACAGGGTACACTTGCACAACGCATCTACCAAGACGTTA
GGATACGTCCAGTACTTGCCTACACTGATACCAACATCCAGATCAGGGCA
AGTTGAGCTACCCGTGGTTGGTGGGGGGGGGGCTTCGAGCTCGGAGTTCA
TACCGCGAGACCTCCGAGCACGAATCCATGACGGATACGTAGAGCCGTGG
CCCAGAGATCAGCACGGGGATTACCAACAAAGTTCTTGCCCTATCCCCGA
ATACCTCGAAACACAGCGTCGCGGGATGGGAATCTGTTTGGTCGTATTCG
ACGAGGATGGGGACAATGCGCGCCGCTTGAGACAGATTGACTGCGATGCG
GGGACAGTTATCATCCTCTTAGATGAAATCCACCAAAGGCGAACAGTGCA
GAAGAGGTACCTTGAGCAGATACAGCAGCAGATGCAGGAGGGTAGGGTAG
AAAGTTGAATGTGGTCTAACAGGGTACACTTGCACAACGCATCTACCAAG
ACGTTAGGATACGTCCAGTACTTGCCTACACTGATACCAACATCCAGATC
AGGGCAAGTTGAGCTACCCGTGGTTGGTGGGGGGGGGGCTTCGAGCTCGG
AGTTCATACCGCGAGACCTCCGAGCACGAATCCATGACGGATACGTAGAG
CCGTGGCCCAGAGATCAGCACGGGGATTACCAACAAAGTTCTTGCCCTAT
CCCCGAATACCTCGAAACACAGCGTCGCGGGATGGGAATCTGTTTGGTCG
TATTCGACGAGGATGGGGACAATGCGCGCCGCTTGAGACAGATTGACTGC
GATGCGGGGACAGTTATCATCCTCTTAGATGAAATCCACCAAAGGCGAAC
AGTGCAGAAGAGGTACCTTGAGCAGATACAGCAGCAGATGCAGGAGGGTA
GGGTAGAAAGTTGA
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