mRNA_F-serratus_M_contig126.1964.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_F-serratus_M_contig126.1964.1
Unique Name	mRNA_F-serratus_M_contig126.1964.1
Type	mRNA
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))

Homology

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig126.1964.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig126.1964.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig126	contig	F-serratus_M_contig126:642032..646384 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-19
OGS1.0 of Fucus serratus male	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	signal peptide
Exons	3
Model size	682
Cds size	663
Stop	0
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig126.1964.1	prot_F-serratus_M_contig126.1964.1	Fucus serratus male	polypeptide	F-serratus_M_contig126 642032..646366 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929189.339073-CDS-F-serratus_M_contig126:642031..642203	1622929189.339073-CDS-F-serratus_M_contig126:642031..642203	Fucus serratus male	CDS	F-serratus_M_contig126 642032..642203 -
1690962742.1469111-CDS-F-serratus_M_contig126:642031..642203	1690962742.1469111-CDS-F-serratus_M_contig126:642031..642203	Fucus serratus male	CDS	F-serratus_M_contig126 642032..642203 -
1622929189.3507233-CDS-F-serratus_M_contig126:645151..645463	1622929189.3507233-CDS-F-serratus_M_contig126:645151..645463	Fucus serratus male	CDS	F-serratus_M_contig126 645152..645463 -
1690962742.1565137-CDS-F-serratus_M_contig126:645151..645463	1690962742.1565137-CDS-F-serratus_M_contig126:645151..645463	Fucus serratus male	CDS	F-serratus_M_contig126 645152..645463 -
1622929189.3600745-CDS-F-serratus_M_contig126:646187..646366	1622929189.3600745-CDS-F-serratus_M_contig126:646187..646366	Fucus serratus male	CDS	F-serratus_M_contig126 646188..646366 -
1690962742.1708484-CDS-F-serratus_M_contig126:646187..646366	1690962742.1708484-CDS-F-serratus_M_contig126:646187..646366	Fucus serratus male	CDS	F-serratus_M_contig126 646188..646366 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929189.8089325-UTR-F-serratus_M_contig126:646366..646384	1622929189.8089325-UTR-F-serratus_M_contig126:646366..646384	Fucus serratus male	UTR	F-serratus_M_contig126 646367..646384 -
1690962742.1793203-UTR-F-serratus_M_contig126:646366..646384	1690962742.1793203-UTR-F-serratus_M_contig126:646366..646384	Fucus serratus male	UTR	F-serratus_M_contig126 646367..646384 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at F-serratus_M_contig126:642032..646384-
coding sequence from alignment at F-serratus_M_contig126:642032..646384-

protein sequence of mRNA_F-serratus_M_contig126.1964.1

>prot_F-serratus_M_contig126.1964.1 ID=prot_F-serratus_M_contig126.1964.1|Name=mRNA_F-serratus_M_contig126.1964.1|organism=Fucus serratus male|type=polypeptide|length=221bp
MTSPSYVLFGVCLGIMLWSGTLLDKRQRRELARYGFRPGMPFIWTHESLS
SEARGFLIESEFNRSAGHVLFPYEYEYNVDELGSVGEGLSLVGGALDVFS
TPPWTDINQVSVGKPVTIYSKKVEDVSQTARVGFRIPMTVTGTTIATLLG
IFLCCAVGCIVKRWRWRALCSGCIGRFVVASAGWPAAVLKAMSSALISII
PPLISMLPTAPRAAFSKTSPV

mRNA from alignment at F-serratus_M_contig126:642032..646384-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_F-serratus_M_contig126.1964.1 ID=mRNA_F-serratus_M_contig126.1964.1|Name=mRNA_F-serratus_M_contig126.1964.1|organism=Fucus serratus male|type=mRNA|length=4353bp|location=Sequence derived from alignment at F-serratus_M_contig126:642032..646384- (Fucus serratus male)
TCCTACCTGTACCTGATCATGACATCCCCATCTTACGTATTGTTCGGGGT
GTGTTTGGGTATTATGTTGTGGAGTGGGACTCTCCTCGATAAAAGACAAC
GGCGTGAGCTAGCGCGCTACGGTTTCAGGCCGGGAATGCCTTTTATCTGG
ACCCACGAATCGCTCTCGTCTGAAGCACGAGGATTCTTGATTGAAAGGTG
AGGAGCATCCCTTCAAGGAGCTGCGGTAATAATTGACCAACGTGATGTAC
ACCGTCCGGGGCAAAGCGGACATTGCTTCGTCCAGGCTATTATGTGCTCA
GCTACTCTCTTTGTGCTGTTAGATTTGTGCAGTACTTAGATTCGAGTAAA
CGGTTGCCGGCAACGACGGTTATGGGTTGCAAGTAGAGACAGAGCACAAG
TACGAGTACCGTTGGTGTTTTCTGGTATGGATGGATATTTGTTATTTGCC
CTATCGGTGTGGGGATTCCGCTGTACCCCACCGGCCGTAACAGCACGTAG
GCACGACCGTTTGGGCTGCACGATAGACCCCATGGTAGCCCTGCAACGCG
CCAGCACACTCATGCATGTACTACTGTGACCAACCGAGTCTTCTGGCGCG
AGACCCAGGCGATGGGGTGAATATGGAAATGCCCCACCGGTGGGGCAAAT
AGCCATATAGTATACTGGTAATATTTAGTAGTACTTCTGTACCAGGTACA
CAGTACATTGTACGAAGTACGTATATTTTAAGGGCATACAAGTACGAGCA
GCGATAGATACTAAATAACATGTCTCGTTCGGCATTGGGCGAGGGACCTC
TACGCCGCATCGACGTCCACCTGGTCAAGGGATATTCAAGAAATAACGAC
CGTTGTTAACTTTTGTTTCACCTTTCGACGTCTTCGCTTGCCTCTATTTT
CGTGTCACGGTCCTTCGACAGTGAATTCAACCGAAGTGCAGGACATGTGT
TATTTCCCTATGAATACGAGTACAACGTTGACGAGCTAGGCTCTGTCGGA
GAAGGCCTTTCTCTGGTAGGTGGCGCCTTAGATGTCTTTTCGACACCACC
ATGGACGGACATCAATCAGGTCTCCGTGGGCAAGCCGGTTACGATTTATT
CAAAGAAGGTGGAAGATGTTAGCCAAACCGCTCGGGTCGGCTTCAGGATC
CCCATGACCGTGACCGGGACTACCATCGCGACTCTTCTGGGCATATTCCT
GTGCTGCGCGGTCGGCTGCATTGTTAAACGCTGGTGAGCACTCGGGTATT
CGGTGGGTCGAAGGTCTTCTAGCTCTCTGGCCCTGTAAAGTGTGCGGGCG
TGTTTTGGTCTGGGTCTGGGTCGTTTGTGTGTGTGTTTAACCTCACCCTA
AATACAGACAGTATAATTATGGTCAGCATGTTCATTCAGCAGATTGTGGA
TCAACCGTTTCCAATCCTCCCTGCTGTCAACTTAAAAGCGGAGATTAGTA
CGTGCCCCCTCTCTCCGTTCGCATATCAGAATTTAGTCTCGCGAGACGGG
TTCGGCCGTATCTTCTCGCGTCAGCCCACTCTTTCCACCCTGGTTCAAGC
TGGTTCTAACTCATGGGTCCTCCCGATTTCCGCAACGGCGTCCATCTATA
CCGCCAACCGCTATCGTGTCAGTCCCGAGTTTATGAGGTCACACATGTCC
GCTTATAACTCCTACAGCATTCCGACAGTGGATATGGAAAAGACAAGGGC
GCATAAAAATTAGTCCATGGTAATAAAACCTGAAAAGGCAGCACCCGTTA
CTGGAACTACCTTGAGGACTACTGGCCCTGTCCCGGCGGACTCTCGACAG
TGAACGCCATCGGTACGCAATTGCGGAACCAGATATATACCTGGTACTTG
GGATTGACCCCATGACGATGGACGATATAAAAAAGTGGACATCGTCAGTG
AAAGGGGGAGGAATCCCGCGAGTAAGCACTAGATTCAGCCTGAGTGCGGA
GAATGATCAAACTTTGGCTGGACGGGATGGTCGAAGCTGTCTCGCGATAC
AGAATTCTCAGGCACGAACGGGGACAGGAAAAAAACAATTTTGCCTGTTC
AGCAGACCACGAGAAGAATTGGCTATCTTACCCATTTGAATTTAATGTAG
TTTGCTATATGTTGTTTAAAAAAAAATCAGAACGCGCCTATGATATGCCT
TCGTTGTTGTTGTTTTCTTGACATAAAGGCCTCAACCATACCCAGTAATA
TACGTGGTTGCCAAGCCGGTACGTAGTCTGCTGGACAGGAAAAGATCTGA
GGGACATCTATAAAGCTCCAACGAAAGAAAAAACACAAGCGCAAAAAAGA
AAGGAACAATAACAAAATACAGATGACAGAAAATGATAGAAGGTCACTGG
ATAGAGATAGTTTGGTATAGTGCCAGCCGCGAGCCATCCGATACCCTCCT
CGGATCGCAACCATGCACCACATCCAAACGTATATCATCTACCACACTCC
GTACTCTCAGGGTTTCAGTTTTCTCTAACGGCACAGTCGACGTCGCTTAG
GGAGTTCTTGGGTTGGCCCAATCAACGCGGCTCGAAAGCGTCTCAAGCTT
GCTGCAATTACCCCAGGTGCAACCTCAACCTTGTCCGCCTCTTCCGCTTC
TCTCTTATTCTGCCGATGCTTGGACGCATTTTCTTTTCCCTTCACTTACG
CGGACATACACCTGCAGTATGATAACCATACGTTCATACTAAATGGACGC
CGCCGCGGAAATCGGGAGGAATCCCGTGAGTAAGCATCAGATTCAGCCTG
GATGTGGAGAATAAGCATGCTAACGCGGGATGGGACGGTCAAACCCGTCT
CGCGAGATTAAATTATCAGGCGCGCGCGAACGGGGACAGGAAAAAAAACA
TTTTTTTCTGCTCAGCAGACCATGAGAAGGATTATCCTGTCTAATGACCT
GTAAGATATGCCTCAATTTTTGTGGAGTACTATTATTAACCCTTTTGGTA
CTATCGGTCTGACAACGGCTATTTTTTTCTTCTTGACAGTCCTGTGCTAC
TCGCGCTACTTTGCATGGGCCAGCCACCATGATCATTCATTTTACAGTAT
ATTGTTTACATATCCCAAGTAGTATACGCCTACTTCGTCTCTAGCCGTTA
TTGTTAAGCGGTTGTTAGTACCAAACTAGTACGACATTTTTCAGGAATGT
TTAGTAAAGTCAAGTGAAGAACAAAGTTGGTTTGGGGTTTACATTTTGTA
CCGTGCACAGGTTTGCGGGGTTGATTCGTGGTATATCCTTGCTGAGCCGC
ATCTTGGGATTGCTTTTAGTTTGGGAAGGTACCGTACTCGGGCTCCTGAC
CTCGCTGCCTAATCAAGGCTAGAAAATAAACAGGCGGTCGACCGCCTGTT
AAGCCCTCTCAAGTACCAAAGGGGTTAATAGTTTAATTACGCTGATACTT
TCAACACGCCCACTTCATACCAATAATAGTATAGTGAGTGTGGGAAAAGA
GAGGGGCGCATATTATTTGGTCCATGGTGACCTGCGAAGCCAGCACTCGT
TCGGTACTACCTCGAGACCTACTGGCCCTGCGGCGACGGACTCTCGGCAG
TGAACGCCATCGGTACGCAATTGGGTGACCCGATAAACTGGGGACTGACC
CAATGGTGTATGGCGGTTTAAATACATAAATGGTGCCGCCTCGGAACTCG
GGAGGAATCCCGTAAGTAAGCACCAGATTCAGCTTGAGTATGACGATGAG
CAGGCTGACGCGGGACGGGAAACTGCCGAATCTGTCTCGCGAGACCAAAT
TCTCAAGCGCGAACACGGACAGGAAAAAAACATTCTCCCTGTTCAGCTGA
CCACGAGCAGGATTGGCAACGTTACCCGGTTGATGCATACTCTTACCATA
TGTGTGACCAGACATTATATGGGGCAGATATGCCACCGGCTTATCGGAAG
CCTACTATTATAGCGTGCGTACGTAGATCAGCGTAAAATCGCCGTAGCTA
ACCGCTTCAATAGCCACGCATTTCTAACGCTCAAACAAGCACAGACGGCA
AATGCGATCAACCTTACCCCGAGGAAGATTCATGGCATCACTCGGAGCAA
GATCTCAATACCCCCGTGTACAGCTGCGCCACAATACGCTTTACATTTCT
CTTACACAAGCAAATTCTCTGACCAACAGTTTTGTCCCTACGTATGTATT
CGTCCTTCGTCCCCCCCCCCCCAACGCTCAGGAGGTGGAGAGCGCTTTGT
TCCGGATGTATCGGGCGCTTTGTTGTGGCTTCCGCTGGTTGGCCCGCTGC
TGTGTTGAAAGCGATGTCCTCAGCACTGATTTCAATCATCCCTCCGCTAA
TCTCGATGCTTCCGACGGCTCCAAGGGCAGCATTTAGCAAGACCTCACCC
GTC

Coding sequence (CDS) from alignment at F-serratus_M_contig126:642032..646384-

>mRNA_F-serratus_M_contig126.1964.1 ID=mRNA_F-serratus_M_contig126.1964.1|Name=mRNA_F-serratus_M_contig126.1964.1|organism=Fucus serratus male|type=CDS|length=1326bp|location=Sequence derived from alignment at F-serratus_M_contig126:642032..646384- (Fucus serratus male)
ATGACATCCCCATCTTACGTATTGTTCGGGGTGTGTTTGGGTATTATGTT
GTGGAGTGGGACTCTCCTCGATAAAAGACAACGGCGTGAGCTAGCGCGCT
ACGGTTTCAGGCCGGGAATGCCTTTTATCTGGACCCACGAATCGCTCTCG
TCTGAAGCACGAGGATTCTTGATTGAAAGATGACATCCCCATCTTACGTA
TTGTTCGGGGTGTGTTTGGGTATTATGTTGTGGAGTGGGACTCTCCTCGA
TAAAAGACAACGGCGTGAGCTAGCGCGCTACGGTTTCAGGCCGGGAATGC
CTTTTATCTGGACCCACGAATCGCTCTCGTCTGAAGCACGAGGATTCTTG
ATTGAAAGTGAATTCAACCGAAGTGCAGGACATGTGTTATTTCCCTATGA
ATACGAGTACAACGTTGACGAGCTAGGCTCTGTCGGAGAAGGCCTTTCTC
TGGTAGGTGGCGCCTTAGATGTCTTTTCGACACCACCATGGACGGACATC
AATCAGGTCTCCGTGGGCAAGCCGGTTACGATTTATTCAAAGAAGGTGGA
AGATGTTAGCCAAACCGCTCGGGTCGGCTTCAGGATCCCCATGACCGTGA
CCGGGACTACCATCGCGACTCTTCTGGGCATATTCCTGTGCTGCGCGGTC
GGCTGCATTGTTAAACGCTGTGAATTCAACCGAAGTGCAGGACATGTGTT
ATTTCCCTATGAATACGAGTACAACGTTGACGAGCTAGGCTCTGTCGGAG
AAGGCCTTTCTCTGGTAGGTGGCGCCTTAGATGTCTTTTCGACACCACCA
TGGACGGACATCAATCAGGTCTCCGTGGGCAAGCCGGTTACGATTTATTC
AAAGAAGGTGGAAGATGTTAGCCAAACCGCTCGGGTCGGCTTCAGGATCC
CCATGACCGTGACCGGGACTACCATCGCGACTCTTCTGGGCATATTCCTG
TGCTGCGCGGTCGGCTGCATTGTTAAACGCTGGAGGTGGAGAGCGCTTTG
TTCCGGATGTATCGGGCGCTTTGTTGTGGCTTCCGCTGGTTGGCCCGCTG
CTGTGTTGAAAGCGATGTCCTCAGCACTGATTTCAATCATCCCTCCGCTA
ATCTCGATGCTTCCGACGGCTCCAAGGGCAGCATTTAGCAAGACCTCACC
CGTCGAGGTGGAGAGCGCTTTGTTCCGGATGTATCGGGCGCTTTGTTGTG
GCTTCCGCTGGTTGGCCCGCTGCTGTGTTGAAAGCGATGTCCTCAGCACT
GATTTCAATCATCCCTCCGCTAATCTCGATGCTTCCGACGGCTCCAAGGG
CAGCATTTAGCAAGACCTCACCCGTC