mRNA_F-serratus_M_contig126.1961.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig126.1961.1 vs. uniprot
Match: D7G767_ECTSI (Selenoprotein T n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G767_ECTSI) HSP 1 Score: 229 bits (585), Expect = 2.100e-66 Identity = 134/276 (48.55%), Postives = 169/276 (61.23%), Query Frame = 3
Query: 3 IMKYIADGSTRQAPASS--PAKGAPTDGDVQLPGIPLDKAVPSVKDKVQTGVPVFTDEEDEFAGLGRE--------IGVTQTDAEVLHTAAGVFPDKRMPYNSPLPAGL----------GPVPRVLVQYCSS*GMRRNFDELRSFLHLHFPVLAEADSIRGELYPPPAYAQTLATLGSYAQMGGIAVTLGGSLIFGTLGVPEPFFVPVMQRNSVRTVIGLFVFNSLCSQFLQTGAFEVWIDDELVFSRLETKGTFPSGAVLISSLEKHGLRSTKNS 770
I +Y+ DG+ ++PA+S P GA + G ++P PL + VP+ + P D EDEFAG+G +G + D D + + G G VP+VLVQ+C S GMRRNF+ELRSFLH H+P LA+A SIRGELYPPP AQ LATLGSYAQ+GG+A L GSLIF LGVP PFFVPVM+RN + T++GL V NS C L TGAFEV ID ELVFSRL +G FP+GA+L+ EK GLRS +++
Sbjct: 35 IKRYVGDGAAGKSPATSDKPPAGAAS-GAREVPVAPLAEIVPTKH--MNHARPAIDDPEDEFAGMGGSTKNTGGGSLGSSNRDDARSAAQQLAVADSSVEFGGTASLGAVTGAGAVGSGGDVPQVLVQFCVSXGMRRNFEELRSFLHAHYPALAKAQSIRGELYPPPPMAQALATLGSYAQVGGVASVLFGSLIFDRLGVPAPFFVPVMRRNPMATIVGLTVANSFCGSLLATGAFEVSIDGELVFSRLAGEGQFPTGALLLREFEKRGLRSVRST 307
BLAST of mRNA_F-serratus_M_contig126.1961.1 vs. uniprot
Match: A0A7S2D3C0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D3C0_9STRA) HSP 1 Score: 114 bits (285), Expect = 4.720e-26 Identity = 61/136 (44.85%), Postives = 82/136 (60.29%), Query Frame = 3
Query: 345 MRRNFDELRSFLHLHFPVLAEADSIRGELYPPPAYAQTLATLGSYAQMGGIAVTLGGSLIFGTLGVPEPFFVPVMQRNSVRTVIGLFVFNSLCSQFLQTGAFEVWIDDELVFSRLETKGTFPSGAVLISSLEKHGL 752
M+RNF ELR+FL +P L I GE YPPP YA + QMGGI + + GS IF TLG+PEP + +Q N + G+F NS+ + TGAFEV +D E+V+S+LET G P+G LI +E+ G+
Sbjct: 1 MKRNFVELRNFLAHRYPELQ--GKIAGENYPPPPYANLAVSAAGTVQMGGIVLMMFGSQIFNTLGMPEPEWYKELQENKMMAFCGVFFMNSMANSLTTTGAFEVLLDGEVVYSKLET-GRMPNGRQLIELMEQKGI 133
BLAST of mRNA_F-serratus_M_contig126.1961.1 vs. uniprot
Match: A0A7S2V5G7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5G7_9STRA) HSP 1 Score: 114 bits (286), Expect = 1.070e-24 Identity = 78/234 (33.33%), Postives = 116/234 (49.57%), Query Frame = 3
Query: 123 SVKDKVQTGVPVFTDEEDEFA---GLGREIGVTQTDAEVLHTAAGVFP----------DKRMPYNSPLPAGLGP--------VPRVLVQYCSS*GMRRNFDELRSFLHLHFPVLAEADSIRGELYPPPAYAQTLATLGSYAQMGGIAVTLGGSLIFGTLGVPEPFFVPVMQRNSVRTVIGLFVFNSLCSQFLQTGAFEVWIDDELVFSRLETKGTFPSGAVLISSLEKHGLRST 761
S K + + VF + EDEFA L E GV AAG FP D AG P+V+V+YC M++NF+E++ FL +P L SI G+ YP P + + ++ +GS + + +GGS +F +G+PEP ++ + N ++ IG+F N + S +TGAFEV++DD+L+FS+LE FPS L L + GLR T
Sbjct: 57 SQKARTLDDIEVFGEAEDEFADVPSLEDEDGVN---------AAGTFPKSSSNIPNDIDDEFGTEDEFDAGSSGNEPFSNRVAPQVIVKYCPQSNMKKNFEEMQQFLEYRYPQLV--GSIHGQNYPLPFHIKVISKIGSSLHLLSLVFLMGGSFVFQKMGIPEPSWLDWAKNNRMQVFIGIFGINYVTSNMAKTGAFEVFLDDDLIFSKLEMN-KFPSVQDLQVGLAQFGLRPT 278
BLAST of mRNA_F-serratus_M_contig126.1961.1 vs. uniprot
Match: A0A6S9L5H0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9L5H0_HETAK) HSP 1 Score: 97.4 bits (241), Expect = 4.150e-20 Identity = 56/142 (39.44%), Postives = 86/142 (60.56%), Query Frame = 3
Query: 345 MRRNFDELRSFLHLHFPVLAEADSIRGELYPPPAYAQTLATLGSYAQMGGIAVTLGGSLIFGTLGVPEP-FFVPVMQRNSVRTVIGLFVFNSLCSQFLQTGAFEVWIDDELVFSRLETKGTFPSGAVLISSLEK-HGLRSTK 764
M+RNF EL+ FL +P L +++G YPPP +A LA LG+ A GGIA+T G +F +G+ P + M+ N + V GLF N++ F +TGAFEV+++ E VFS+LE+ G FP+ + + +++ GL T+
Sbjct: 1 MQRNFIELQKFLEYSYPELV--GNVQGTFYPPPPFALALANLGTLALWGGIALTFLGETLFRAVGLAAPPGWFQSMKANPMPVVGGLFALNAVAGGFAKTGAFEVYLNGETVFSKLES-GRFPNAEDIYAGMKRVAGLNPTR 139
BLAST of mRNA_F-serratus_M_contig126.1961.1 vs. uniprot
Match: A0A482RX40_9ARCH (SelT/SelW/SelH family protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RX40_9ARCH) HSP 1 Score: 93.6 bits (231), Expect = 6.610e-19 Identity = 50/136 (36.76%), Postives = 78/136 (57.35%), Query Frame = 3
Query: 345 MRRNFDELRSFLHLHFPVLAEADSIRGELYPPPAYAQTLATLGSYAQMGGIAVTLGGSLIFGTLGVPEPFFVPVMQRNSVRTVIGLFVFNSLCSQFLQTGAFEVWIDDELVFSRLETKGTFPSGAVLISSLEKHGL 752
M + F +++ F+ +P + + G LYPPP +A+ AT+ Y GI + +GG IF LG+PEP FV + RN + + LFV N++ L TGAFE+++D+ VFS+L T G P+ ++ +L GL
Sbjct: 1 MSKYFQDVKRFVESKYPSV----HVSGGLYPPPIHARIFATIMGYVWTIGIVLIVGGQQIFKILGIPEPEFVSWIARNKGNSFLALFVLNTVSHSMLATGAFELYLDEAPVFSKL-TYGRVPTAEDILHALADQGL 131
BLAST of mRNA_F-serratus_M_contig126.1961.1 vs. uniprot
Match: F0YLT9_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YLT9_AURAN) HSP 1 Score: 92.8 bits (229), Expect = 4.070e-18 Identity = 52/145 (35.86%), Postives = 81/145 (55.86%), Query Frame = 3
Query: 315 VLVQYCSS*GMRRNFDELRSFLHLHFPVLAEADSIRGELYPPPAYAQTLATLGSYAQMGGIAVTLGGSLIFGTLGVPEPFFVPVMQRNSVRTVIGLFVFNSLCSQFLQTGAFEVWIDDELVFSRLETKGTFPSGAVLISSLEKHG 749
VLV+ C+S G +RN+ ELR FL +P L S+ E YPPPA A AQ+ +A+ LGG +F G P + + N + +++ N++ +Q + TGAFE+ ++ EL FS+LET G PS A ++ +++ G
Sbjct: 24 VLVKLCTSXGTQRNYLELRKFLEDAYPGLR---SVAAEQYPPPAVGVFAAQAAGMAQVACVALLLGGEKVFQLFGAATPGWYHSVAENKMMAFGAVWMANNVAAQMVATGAFEIHVNGELAFSKLET-GRLPSAADVVRGMKRAG 164
BLAST of mRNA_F-serratus_M_contig126.1961.1 vs. uniprot
Match: B7G6P7_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G6P7_PHATC) HSP 1 Score: 83.2 bits (204), Expect = 3.640e-15 Identity = 58/148 (39.19%), Postives = 86/148 (58.11%), Query Frame = 3
Query: 345 MRRNFDELRSFLHLHFPVLAEADSIRGELYPPPAYAQTLATLGSYAQMGGIA-VTLGGSLIFGTLGVPE---PFFVPVMQRNSVRTVIGLFVFNSL---CSQFLQTGAFEVWIDDELVFSRLETKGTFPSGAVLISSLEKHGLRSTKN 767
M+RNF ++ FL FP L I G YPPPA + A L S Q+ GI + GG IF LG P+ P + +N++ IG+F+F L ++ QTGAFEV+++D+ +FS+L +KG FP+ LISSL + GL++ ++
Sbjct: 1 MKRNFLNVQKFLEDQFPELR--GHITGANYPPPATIELAANLMSVIQLMGIFWIVAGGEKIFRFLGYPQNQLPSVYHTINQNAMP--IGIFLFLILPQWIGRYTQTGAFEVYLNDKEIFSKL-SKGAFPTADDLISSLVQAGLQTAQD 143
BLAST of mRNA_F-serratus_M_contig126.1961.1 vs. uniprot
Match: A0A6U3TNV0_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3TNV0_9STRA) HSP 1 Score: 79.0 bits (193), Expect = 1.040e-13 Identity = 50/141 (35.46%), Postives = 73/141 (51.77%), Query Frame = 3
Query: 345 MRRNFDELRSFLHLHFPVLAEADSIRGELYPPPAYAQTLATLGSYAQMGGIAVTLGGSLIF----GTLGVPEPFFVPVMQRNSVRTVIGLFVFNSLCSQFLQTGAFEVWIDDELVFSRLETKGTFPSGAVLISSLEKHGLR 755
M+ NF LR L FP E I G+ YP P + AT+ S QM I V L G ++ G P F+ + ++ +I V S F TGAFE+++DD+L+FS+LET G P+ ++++LEK GL+
Sbjct: 1 MKANFLRLRELLRTEFP--GEWSEISGDNYPAPEWTNLAATVISILQMLVILVVLTGDAVWNYIPGFRSGPPEFYYKMKDNPALTFMIVFLVIPSYVQSFANTGAFEIFLDDKLIFSKLET-GRMPNVGEIMAALEKSGLQ 138
BLAST of mRNA_F-serratus_M_contig126.1961.1 vs. uniprot
Match: D8TH73_VOLCA (Selenoprotein T n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TH73_VOLCA) HSP 1 Score: 80.9 bits (198), Expect = 2.090e-13 Identity = 51/153 (33.33%), Postives = 80/153 (52.29%), Query Frame = 3
Query: 294 GLGPVPRVLVQYCSS*GMRRNFDELRSFLHLHFPVLAEADSIRGELYPPPAYAQTLATLGSYAQMGGIAVTLGGSLIFGTLGV-PEPFFVPVMQRNSVRTVIGL-FVFNSLCSQFLQTGAFEVWIDDELVFSRLETKGTFPSGAVLISSLEKH 746
GL RV + +CSS GMR F +++ + FP + + G YP PA+ + L T QM +A + G IF LG+ P ++ + N V+G+ FV N L + TGAFE++ D +L+FS+L +G P+ A L+ +E +
Sbjct: 41 GLSLGGRVHISFCSSXGMRGAFGQVQQLVRTRFPGV----EVHGTTYPLPAWKRPLVTAARSIQMTALAFCIAGDHIFRQLGMQPVAWYTQNVASNRPGAVMGVWFVGNMLITNLQNTGAFEIYFDGQLIFSKL-AEGRMPTMAELLGPMEAY 188
BLAST of mRNA_F-serratus_M_contig126.1961.1 vs. uniprot
Match: A0A0P1A8C3_PLAHL (Selt selw selh selenoprotein domain containing protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A8C3_PLAHL) HSP 1 Score: 77.4 bits (189), Expect = 1.290e-12 Identity = 43/147 (29.25%), Postives = 80/147 (54.42%), Query Frame = 3
Query: 312 RVLVQYCSS*GMRRNFDELRSFLHLHFPVLAEADSIRGELYPPPAYAQTLATLGSYAQMGGIAVTLGGSLIFGTLGVPEPFFVPVMQRNSVRTVIGLFVFNSLCSQFLQTGAFEVWIDDELVFSRLETKGTFPSGAVLISSLEKHGL 752
+V + +C++ G +NF +++ +L FP L D + G Y ++ LA + YAQM I + L G + +LGV + + N + + + +L S +GAFE++ +D+L+FS+L+T G +P+ + S++K+GL
Sbjct: 46 QVRIMFCTACGYEQNFHQVKIYLEDTFPHLV--DRVYGANYEADSFKMMLARILGYAQMVAIPLLLFGDYLLPSLGVVNVSMLRWARENRIVAIFIVVAMGALASSLTASGAFEIYFNDDLIFSKLQT-GRWPTLQEVSDSIKKYGL 189 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig126.1961.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig126.1961.1 >prot_F-serratus_M_contig126.1961.1 ID=prot_F-serratus_M_contig126.1961.1|Name=mRNA_F-serratus_M_contig126.1961.1|organism=Fucus serratus male|type=polypeptide|length=143bp MRRNFDELRSFLHLHFPVLAEADSIRGELYPPPAYAQTLATLGSYAQMGGback to top mRNA from alignment at F-serratus_M_contig126:553869..556421+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig126.1961.1 ID=mRNA_F-serratus_M_contig126.1961.1|Name=mRNA_F-serratus_M_contig126.1961.1|organism=Fucus serratus male|type=mRNA|length=2553bp|location=Sequence derived from alignment at F-serratus_M_contig126:553869..556421+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig126:553869..556421+ >mRNA_F-serratus_M_contig126.1961.1 ID=mRNA_F-serratus_M_contig126.1961.1|Name=mRNA_F-serratus_M_contig126.1961.1|organism=Fucus serratus male|type=CDS|length=858bp|location=Sequence derived from alignment at F-serratus_M_contig126:553869..556421+ (Fucus serratus male)back to top |