mRNA_F-serratus_M_contig126.1955.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig126.1955.1
Unique NamemRNA_F-serratus_M_contig126.1955.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig126.1955.1 vs. uniprot
Match: A0A6H5JFK2_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFK2_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 3.700e-24
Identity = 55/83 (66.27%), Postives = 59/83 (71.08%), Query Frame = 1
Query:    1 TEKLDIYSMGMIFWSMFGRQPPFERDHDSEYKDMVMAGLRPYVAPSWHQGFTQLFQDMWAGDPLERPTAAEVVGRLEEMLAAL 249
            TEKLDIYS+G IFW+M GR+PPF RD D  YK  V+ G RP V PSWH  F QLF DMW  DP ERPTA EVV RLE M A L
Sbjct:  313 TEKLDIYSLGNIFWAMLGRKPPFVRDDD--YKGKVLRGERPKVNPSWHPEFVQLFTDMWKRDPRERPTAREVVLRLEAMYAEL 393          
BLAST of mRNA_F-serratus_M_contig126.1955.1 vs. uniprot
Match: D7G774_ECTSI (Similar to TAK1 (TGF-beta-activated kinase) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G774_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 6.320e-24
Identity = 53/83 (63.86%), Postives = 59/83 (71.08%), Query Frame = 1
Query:    1 TEKLDIYSMGMIFWSMFGRQPPFERDHDSEYKDMVMAGLRPYVAPSWHQGFTQLFQDMWAGDPLERPTAAEVVGRLEEMLAAL 249
            TEKLDIYS+G IFW+M GR+PPF+RD   +YK  V+ G RP V PSWH  F QLF DMW  DP ERP A EVV RLE M A L
Sbjct:  187 TEKLDIYSLGNIFWAMLGRKPPFKRD--DKYKARVLRGERPKVDPSWHPEFVQLFTDMWKRDPRERPNAREVVLRLEMMYAQL 267          
BLAST of mRNA_F-serratus_M_contig126.1955.1 vs. uniprot
Match: D7FHD3_ECTSI (Similar to TAK1 (TGF-beta-activated kinase) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHD3_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 5.320e-16
Identity = 41/81 (50.62%), Postives = 52/81 (64.20%), Query Frame = 1
Query:    1 TEKLDIYSMGMIFWSMFG-RQPPFERDHDSEYKDMVMAGLRPYVAPSWHQGFTQLFQDMWAGDPLERPTAAEVVGRLEEML 240
            TE +DIYSM ++FW +   R  PFE  H  +  D+V +  RP+V PSW   + QL QDMW  DP  RP+A +VV RLEEML
Sbjct:  278 TEMVDIYSMAIVFWQLVSLRTVPFESKHRRDIPDLVASHQRPFVDPSWDPHYAQLLQDMWRTDPEMRPSARQVVARLEEML 358          
BLAST of mRNA_F-serratus_M_contig126.1955.1 vs. uniprot
Match: D8LN76_ECTSI (Serine/threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN76_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 1.090e-14
Identity = 39/79 (49.37%), Postives = 57/79 (72.15%), Query Frame = 1
Query:    1 TEKLDIYSMGMIFWSMFGRQPPFERDHDSEYKDMVMAGLRPYVAPSWHQGFTQLFQDMWAGDPLERPTAAEVVGRLEEM 237
            +EK+DIY+MGMI++S+     PF  D ++ ++    A LRP + PSWH+GFT++FQDMW  DP  RP+A +VV RLE++
Sbjct:  166 SEKVDIYAMGMIYFSLISGGVPFP-DQEA-FERAYEAKLRPEIDPSWHKGFTRIFQDMWHQDPERRPSARQVVLRLEDL 242          
BLAST of mRNA_F-serratus_M_contig126.1955.1 vs. uniprot
Match: D8LMS6_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMS6_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 4.310e-14
Identity = 38/83 (45.78%), Postives = 55/83 (66.27%), Query Frame = 1
Query:    1 TEKLDIYSMGMIFWSMFGRQPPFERDHDSEYKDMVMAGLRPYVAPSWHQGFTQLFQDMWAGDPLERPTAAEVVGRLEEMLAAL 249
            T  +D+YSMG+IF+++   + PF +      +   M+  RP +AP WH+G+TQ+ QDMWA DP +RP+A EVV RLE +L  L
Sbjct:   91 TFSVDVYSMGIIFYALIAGRLPFTKQGVQLVR---MSTARPEMAPWWHKGYTQVIQDMWARDPDKRPSAGEVVERLEHILEEL 170          
BLAST of mRNA_F-serratus_M_contig126.1955.1 vs. uniprot
Match: A0A6H5L156_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L156_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 7.810e-13
Identity = 33/77 (42.86%), Postives = 50/77 (64.94%), Query Frame = 1
Query:    1 TEKLDIYSMGMIFWSMFGRQPPFERDHDSEYKDMVMAGLRPYVAPSWHQGFTQLFQDMWAGDPLERPTAAEVVGRLE 231
            +EK+DIYS+ M F++M   +PP+  +  +  +  ++AG+ P V+ SW QGF ++  DMW  DP  RP+A  VV RLE
Sbjct:   43 SEKIDIYSLAMTFYTMLALKPPYNGEPGARAR--ILAGIPPSVSLSWDQGFVEILGDMWQRDPKARPSARRVVERLE 117          
BLAST of mRNA_F-serratus_M_contig126.1955.1 vs. uniprot
Match: D7FYC9_ECTSI (Similar to TAK1 (TGF-beta-activated kinase) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYC9_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 9.420e-13
Identity = 35/77 (45.45%), Postives = 45/77 (58.44%), Query Frame = 1
Query:    1 TEKLDIYSMGMIFWSMFGRQPPFERDHDSEYKDMVMAGLRPYVAPSWHQGFTQLFQDMWAGDPLERPTAAEVVGRLE 231
            TE  DIYSM M+F+S+    PPF                RP V PSWH+G+ Q+ QDMW  DP+ RP+A ++V RLE
Sbjct:  293 TETSDIYSMAMVFYSLLSGTPPFGGPEGLAEAFATRTQPRPLVDPSWHRGYVQIVQDMWNEDPMRRPSARQIVARLE 369          
BLAST of mRNA_F-serratus_M_contig126.1955.1 vs. uniprot
Match: D8LHZ9_ECTSI (Serine/threonine-protein kinase pkn5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHZ9_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 1.820e-12
Identity = 37/79 (46.84%), Postives = 47/79 (59.49%), Query Frame = 1
Query:    1 TEKLDIYSMGMIFWSMFGRQPPFE--RDHDSEYKDMVMAGLRPYVAPSWHQGFTQLFQDMWAGDPLERPTAAEVVGRLE 231
             EKLDIYS+ M+F+SM    PP++  R+     KD    G+ P   PSWH GF  + +DMW  DP  RP+A  VV RLE
Sbjct:  132 NEKLDIYSLAMVFYSMLALHPPYQGVRNASGNIKD----GIPPPTDPSWHPGFLDIVRDMWQRDPNARPSARRVVQRLE 206          
BLAST of mRNA_F-serratus_M_contig126.1955.1 vs. uniprot
Match: A0A6H5JU33_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU33_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 2.380e-12
Identity = 39/80 (48.75%), Postives = 51/80 (63.75%), Query Frame = 1
Query:    1 TEKLDIYSMGMIFWSMFGRQPPFERDHDSEYKDMVMAGL-RPYVAPSWHQGFTQLFQDMWAGDPLERPTAAEVVGRLEEM 237
            TEK+DIY+MGMI++S+     PF    D E  D   A   RP + PSWH+GF ++ QDMW  DP ERP A +VV RL+ +
Sbjct:  222 TEKVDIYAMGMIYYSLISGGLPFP---DVETFDEARAAHDRPEIDPSWHKGFVEIIQDMWHEDPEERPFARQVVQRLQAL 298          
BLAST of mRNA_F-serratus_M_contig126.1955.1 vs. uniprot
Match: D8LN73_ECTSI (Serine/threonine/tyrosine kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN73_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 3.150e-12
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 1
Query:    1 TEKLDIYSMGMIFWSMFGRQPPFERDHDSEYKDMVMAGLRPYVAPSWHQGFTQLFQDMWAGDPLERPTAAEVVGRL 228
            TEK DIYSMGMIF+S+   + P+  D     +  V  G +P V PSWH+GF ++ + MW  DP  RP+A +VV RL
Sbjct:  185 TEKADIYSMGMIFYSVIAGRNPY--DTPEALQTAVSHGSKPEVDPSWHRGFMEVVEQMWLDDPERRPSARQVVTRL 258          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig126.1955.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JFK2_9PHAE3.700e-2466.27Protein kinase domain-containing protein n=1 Tax=E... [more]
D7G774_ECTSI6.320e-2463.86Similar to TAK1 (TGF-beta-activated kinase) n=1 Ta... [more]
D7FHD3_ECTSI5.320e-1650.62Similar to TAK1 (TGF-beta-activated kinase) n=1 Ta... [more]
D8LN76_ECTSI1.090e-1449.37Serine/threonine protein kinase n=1 Tax=Ectocarpus... [more]
D8LMS6_ECTSI4.310e-1445.78Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5L156_9PHAE7.810e-1342.86Protein kinase domain-containing protein n=1 Tax=E... [more]
D7FYC9_ECTSI9.420e-1345.45Similar to TAK1 (TGF-beta-activated kinase) n=1 Ta... [more]
D8LHZ9_ECTSI1.820e-1246.84Serine/threonine-protein kinase pkn5 n=1 Tax=Ectoc... [more]
A0A6H5JU33_9PHAE2.380e-1248.75Protein kinase domain-containing protein n=1 Tax=E... [more]
D8LN73_ECTSI3.150e-1247.37Serine/threonine/tyrosine kinase n=1 Tax=Ectocarpu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig126contigF-serratus_M_contig126:502785..503972 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.5
Seed ortholog evalue1.3e-11
Seed eggNOG ortholog2880.D7FHD3
KEGG koko:K04427
KEGG Pathwayko04010,ko04013,ko04064,ko04140,ko04152,ko04214,ko04310,ko04380,ko04520,ko04620,ko04621,ko04622,ko04624,ko04657,ko04660,ko04668,ko05140,ko05145,ko05162,ko05168,ko05169,ko05418,map04010,map04013,map04064,map04140,map04152,map04214,map04310,map04380,map04520,map04620,map04621,map04622,map04624,map04657,map04660,map04668,map05140,map05145,map05162,map05168,map05169,map05418
KEGG ModuleM00686,M00688,M00689
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
EC2.7.11.25
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Exons2
Model size1000
Cds size249
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig126.1955.1prot_F-serratus_M_contig126.1955.1Fucus serratus malepolypeptideF-serratus_M_contig126 502809..503245 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929193.8380127-UTR-F-serratus_M_contig126:502784..5028081622929193.8380127-UTR-F-serratus_M_contig126:502784..502808Fucus serratus maleUTRF-serratus_M_contig126 502785..502808 +
1690962744.2082138-UTR-F-serratus_M_contig126:502784..5028081690962744.2082138-UTR-F-serratus_M_contig126:502784..502808Fucus serratus maleUTRF-serratus_M_contig126 502785..502808 +
1622929193.8849518-UTR-F-serratus_M_contig126:503245..5039721622929193.8849518-UTR-F-serratus_M_contig126:503245..503972Fucus serratus maleUTRF-serratus_M_contig126 503246..503972 +
1690962744.2353141-UTR-F-serratus_M_contig126:503245..5039721690962744.2353141-UTR-F-serratus_M_contig126:503245..503972Fucus serratus maleUTRF-serratus_M_contig126 503246..503972 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929193.8552625-CDS-F-serratus_M_contig126:502808..5029431622929193.8552625-CDS-F-serratus_M_contig126:502808..502943Fucus serratus maleCDSF-serratus_M_contig126 502809..502943 +
1690962744.218366-CDS-F-serratus_M_contig126:502808..5029431690962744.218366-CDS-F-serratus_M_contig126:502808..502943Fucus serratus maleCDSF-serratus_M_contig126 502809..502943 +
1622929193.8691814-CDS-F-serratus_M_contig126:503131..5032451622929193.8691814-CDS-F-serratus_M_contig126:503131..503245Fucus serratus maleCDSF-serratus_M_contig126 503132..503245 +
1690962744.226529-CDS-F-serratus_M_contig126:503131..5032451690962744.226529-CDS-F-serratus_M_contig126:503131..503245Fucus serratus maleCDSF-serratus_M_contig126 503132..503245 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig126.1955.1

>prot_F-serratus_M_contig126.1955.1 ID=prot_F-serratus_M_contig126.1955.1|Name=mRNA_F-serratus_M_contig126.1955.1|organism=Fucus serratus male|type=polypeptide|length=83bp
MGMIFWSMFGRQPPFERDHDSEYKDMVMAGLRPYVAPSWHQGFTQLFQDM
WAGDPLERPTAAEVVGRLEEMLAALEGHLRDE*
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mRNA from alignment at F-serratus_M_contig126:502785..503972+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig126.1955.1 ID=mRNA_F-serratus_M_contig126.1955.1|Name=mRNA_F-serratus_M_contig126.1955.1|organism=Fucus serratus male|type=mRNA|length=1188bp|location=Sequence derived from alignment at F-serratus_M_contig126:502785..503972+ (Fucus serratus male)
ACGGAGAAGCTCGACATCTACAGCATGGGTATGATATTCTGGTCCATGTT CGGGAGACAGCCACCCTTTGAGCGGGACCACGACAGCGAGTACAAGGACA TGGTGATGGCCGGGCTTCGCCCTTACGTGGCACCTTCCTGGCACCAAGGG TTCACTCAGGTGAGGGCGACGATCGAGCCGAGTGATTATGGGTGTGGTAC TGGAGGACGAGACGAACGAGAGCTTAGGCCAAGAGCTCGCTCCTTGCTAA ATACAACTATCAATAACATCAATAGCATCAATAACAACATCAGAGTGATT GATTGTCTTGATCATTTCCTGTTCTGAAACGCTCCACCGTCGCGAAGCTC TTTCAAGATATGTGGGCCGGAGATCCGTTAGAGAGGCCGACCGCTGCTGA GGTTGTTGGGCGCTTGGAGGAAATGCTGGCGGCATTAGAGGGGCATCTAC GCGACGAGTGACAACCGATGCATCGGCGATGGATACGGGCTTGAAACGAA GATTGGTCGCAACAACGGGTGCTCAGGCGGAATTCCGGCACTGCTGTAGT GTAAGGTGTAGTTATACTTGTTATACACAGTTTGTTGGGAGAGTTTTACA AGATCAGGTACACTAGCTCTTCAATTCGGTAGAGACGCCGTCCGTCCGGG GCGACTATAGTTATAAATTGTATCGTATAAACCAAATCAAATCGACAAGT ACAGGAGCTTTTTGGGATGGATTCTTCTTTTGAGGTATACTTGTTATGCA TAGTGTGCTGGACGAAATCTACAAGATCAAGCACACTCACTCTTCAGTTC TGTAGAGGCGCCGCCCATCCGGCGCGACCATAAATAGTATGGACCAAATC AAATCGACAAGTACGAGAGCCTTTTTGGATGGATTGTAGGGTTTTGTGCT CACGCTTTTCTTTGAAAACTACAAACGAACATTGTATCAACAGCTCCTTG ATTGCTAATGTACTGTATCCAACCTCGTCATTCCACACCAAGCTTTAACT GGACTTGAATCACTCGTACCTGGTAGACTTTGATATAGACTATGATAGTA TCGTCATAACTCTAGGTATGTAGAGACGTGGAATGTCGGCGTATTCTGGC GTCACCTTTGACTGTAAGCGTGTCAAGCTTGCGGTGTTGTTTTTTACTCG CTACGAGGGAGTACGATTTAATGAAACTCATTACGGAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig126:502785..503972+

>mRNA_F-serratus_M_contig126.1955.1 ID=mRNA_F-serratus_M_contig126.1955.1|Name=mRNA_F-serratus_M_contig126.1955.1|organism=Fucus serratus male|type=CDS|length=498bp|location=Sequence derived from alignment at F-serratus_M_contig126:502785..503972+ (Fucus serratus male)
ATGGGTATGATATTCTGGTCCATGTTCGGGAGACAGCCACCCTTTGAGCG
GGACCACGACAGCGAGTACAAGGACATGGTGATGGCCGGGCTTCGCCCTT
ACGTGGCACCTTCCTGGCACCAAGGGTTCACTCAGATGGGTATGATATTC
TGGTCCATGTTCGGGAGACAGCCACCCTTTGAGCGGGACCACGACAGCGA
GTACAAGGACATGGTGATGGCCGGGCTTCGCCCTTACGTGGCACCTTCCT
GGCACCAAGGGTTCACTCAGCTCTTTCAAGATATGTGGGCCGGAGATCCG
TTAGAGAGGCCGACCGCTGCTGAGGTTGTTGGGCGCTTGGAGGAAATGCT
GGCGGCATTAGAGGGGCATCTACGCGACGAGTGACTCTTTCAAGATATGT
GGGCCGGAGATCCGTTAGAGAGGCCGACCGCTGCTGAGGTTGTTGGGCGC
TTGGAGGAAATGCTGGCGGCATTAGAGGGGCATCTACGCGACGAGTGA
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