mRNA_F-serratus_M_contig1259.1933.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1259.1933.1
Unique NamemRNA_F-serratus_M_contig1259.1933.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1259.1933.1 vs. uniprot
Match: A0A6H5K255_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K255_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 2.110e-6
Identity = 30/76 (39.47%), Postives = 52/76 (68.42%), Query Frame = 2 
Query:  278 ALCLGLSPSIPH*ALQQLQTFEVPEKTSFADFLSELRIAVMSVKDVALVSPDDSTMQVVVKTSIDDQFATLVASIF 505
            AL   +S S P   +  LQTF VP  T ++++L+ L+  V +V+++A+V+P D+T+Q+ V+ S+ DQ++ L AS+F
Sbjct:  469 ALGRVVSSSSPEKLVYDLQTFAVPTGTPYSEYLTTLQGLVHNVRNLAIVTPQDNTIQLAVRESVSDQYSVLTASVF 544
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BLAST of mRNA_F-serratus_M_contig1259.1933.1 vs. uniprot
Match: A0A6H5K0Q4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Q4_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 9.120e-5
Identity = 52/202 (25.74%), Postives = 86/202 (42.57%), Query Frame = 2 
Query:  173 QVTRTEQMVRDAFARAEAAERSDQPGIHVQEWILLALCLGLSPSIPH*ALQQLQTFEVPEKTSFADFLSELRIAVMSVKDVALVSPDDSTMQVVVKTSIDDQFATLVASIFADRNRLAIPFGRVEEQLDSLRDLTMNCAPATAATRLGPR-RAGCRTASGSARSGNVFPVGGKAKKSRLDDAWHWQHDEKEYEHIMTVLDRD 775
            Q     + +   F+           G     ++  AL   ++ S P   +  LQTF VP  T + ++L+ L+    +V+++ALV+P D+T+Q+ V+  + DQ++ L AS+   +    + F       D+     M     ++  R G R   G RT SG    GN F     A   R D  +  +        +MTV D D
Sbjct:    5 QTITFREKIGKVFSDTSKKIEEGSTGRKALAFLTSALGRVVNSSSPEKVVYDLQTFAVPTGTPYREYLTTLQGLGHNVRNLALVTPQDNTIQLAVREIVSDQYSVLTASVCKGKELGVVQF-------DNXPTRRMAQVKGSSGGRQGQRCDGGGRTGSG---GGNTFR---SASPGRSDGGYGGRR-------VMTVEDMD 186
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1259.1933.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K255_9PHAE2.110e-639.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0Q4_9PHAE9.120e-525.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1259contigF-serratus_M_contig1259:168187..169569 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size849
Cds size438
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1259.1933.1prot_F-serratus_M_contig1259.1933.1Fucus serratus malepolypeptideF-serratus_M_contig1259 169118..169555 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929184.587734-UTR-F-serratus_M_contig1259:168186..1683611622929184.587734-UTR-F-serratus_M_contig1259:168186..168361Fucus serratus maleUTRF-serratus_M_contig1259 168187..168361 +
1690962742.0028095-UTR-F-serratus_M_contig1259:168186..1683611690962742.0028095-UTR-F-serratus_M_contig1259:168186..168361Fucus serratus maleUTRF-serratus_M_contig1259 168187..168361 +
1622929184.6007876-UTR-F-serratus_M_contig1259:168895..1691171622929184.6007876-UTR-F-serratus_M_contig1259:168895..169117Fucus serratus maleUTRF-serratus_M_contig1259 168896..169117 +
1690962742.0116901-UTR-F-serratus_M_contig1259:168895..1691171690962742.0116901-UTR-F-serratus_M_contig1259:168895..169117Fucus serratus maleUTRF-serratus_M_contig1259 168896..169117 +
1622929184.6286354-UTR-F-serratus_M_contig1259:169555..1695691622929184.6286354-UTR-F-serratus_M_contig1259:169555..169569Fucus serratus maleUTRF-serratus_M_contig1259 169556..169569 +
1690962742.0279198-UTR-F-serratus_M_contig1259:169555..1695691690962742.0279198-UTR-F-serratus_M_contig1259:169555..169569Fucus serratus maleUTRF-serratus_M_contig1259 169556..169569 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929184.6147137-CDS-F-serratus_M_contig1259:169117..1695551622929184.6147137-CDS-F-serratus_M_contig1259:169117..169555Fucus serratus maleCDSF-serratus_M_contig1259 169118..169555 +
1690962742.0198014-CDS-F-serratus_M_contig1259:169117..1695551690962742.0198014-CDS-F-serratus_M_contig1259:169117..169555Fucus serratus maleCDSF-serratus_M_contig1259 169118..169555 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1259.1933.1

>prot_F-serratus_M_contig1259.1933.1 ID=prot_F-serratus_M_contig1259.1933.1|Name=mRNA_F-serratus_M_contig1259.1933.1|organism=Fucus serratus male|type=polypeptide|length=146bp
MSVKDVALVSPDDSTMQVVVKTSIDDQFATLVASIFADRNRLAIPFGRVE
EQLDSLRDLTMNCAPATAATRLGPRRAGCRTASGSARSGNVFPVGGKAKK
SRLDDAWHWQHDEKEYEHIMTVLDRDGGFGQNHSDPAFYARFPTL*
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mRNA from alignment at F-serratus_M_contig1259:168187..169569+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1259.1933.1 ID=mRNA_F-serratus_M_contig1259.1933.1|Name=mRNA_F-serratus_M_contig1259.1933.1|organism=Fucus serratus male|type=mRNA|length=1383bp|location=Sequence derived from alignment at F-serratus_M_contig1259:168187..169569+ (Fucus serratus male)
TTTTTGCCAAGGCAGTGGCGGCGCATCGGGAAGGCGGACGTGGTAGCGAG
GACCGCGGTGACGAATATCGTAAAGACATCGGTGACGACCGCCGGCGGGG
CAGGCATAGCTCTCGTAAGGACTTGAAGGACACCCGCGAGCGCCGCCCTG
GTGACCGACCTTCTGCGGGACCCAGGTGGGACGAGAAGAGCGATAGTTCT
TGCTCTAGTTCAGATTTCTCTCGCCGAGATAGCCGACGTCGTAGTCACAG
GCGTAGAAAAGAGACACACCAAGATTGCTCTGCAGATTCCGCATCCCCAA
ACCGATCACCCGCGCCGGAACAATTTCCTGTTCCCTCTCTCCCAAGACCC
CAGCATGTTGCGTTTCCTACAGTACATCACCCGGTCCCGAGTGAGCCCGC
GTCCGAAAAATCTTCCGCGCTCTTGTCAGAGATTTCCTCCTGTCCCAGCC
AGAGAGAAAACATCAATCGTAGATGCTACGCGTTCCTGGACACCAAGGGC
CTGATGAAGTTGCCCTCGATCCCTTTCGACGTTGCTGACGGAAATTGTCA
CATGTATTTTGTTAAGATCACTGCTTCCCTCAAGGAGGCTGTAGAGCAGA
CCAGAGACCTAGGAGGAGATTTCAGCGAAGATGGTTTGGGATTCCAAGAC
GGCACAAACCACTGATGCGCCATGTTCTCAACTCTGTGTCTCACCATCAT
CCAGCACAGGTGACGAGGACGGAGCAGATGGTTCGGGACGCCTTCGCCAG
AGCAGAAGCTGCCGAGAGGAGCGACCAACCCGGAATACACGTTCAGGAAT
GGATTCTGCTTGCTTTATGCCTGGGACTCAGCCCCTCTATACCGCACTAA
GCATTGCAGCAGCTGCAGACCTTCGAAGTTCCCGAGAAGACTTCGTTCGC
GGACTTCCTGTCCGAGTTGCGCATAGCAGTCATGAGTGTTAAGGATGTAG
CTCTCGTCTCTCCCGATGATAGCACGATGCAAGTTGTGGTGAAGACTAGC
ATCGATGATCAGTTCGCCACTTTGGTCGCCTCGATCTTCGCGGATAGAAA
CCGGTTGGCAATCCCTTTCGGTCGTGTTGAAGAACAGCTAGATTCTCTGA
GGGACTTGACAATGAACTGTGCTCCAGCAACTGCTGCAACTAGACTGGGC
CCAAGGAGGGCAGGGTGCAGGACTGCATCTGGATCTGCTCGAAGTGGAAA
TGTGTTCCCGGTTGGGGGTAAAGCGAAAAAGTCAAGGCTAGATGATGCAT
GGCACTGGCAACATGACGAGAAAGAATACGAGCACATCATGACCGTTCTA
GACAGAGATGGCGGTTTTGGCCAAAATCATTCCGATCCCGCATTTTATGC
CCGTTTCCCCACGCTTTAAGAGAGACGCGCGGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1259:168187..169569+

>mRNA_F-serratus_M_contig1259.1933.1 ID=mRNA_F-serratus_M_contig1259.1933.1|Name=mRNA_F-serratus_M_contig1259.1933.1|organism=Fucus serratus male|type=CDS|length=876bp|location=Sequence derived from alignment at F-serratus_M_contig1259:168187..169569+ (Fucus serratus male)
ATGAGTGTTAAGGATGTAGCTCTCGTCTCTCCCGATGATAGCACGATGCA
AGTTGTGGTGAAGACTAGCATCGATGATCAGTTCGCCACTTTGGTCGCCT
CGATCTTCGCGGATAGAAACCGGTTGGCAATCCCTTTCGGTCGTGTTGAA
GAACAGCTAGATTCTCTGAGGGACTTGACAATGAACTGTGCTCCAGCAAC
TGCTGCAACTAGACTGGGCCCAAGGAGGGCAGGGTGCAGGACTGCATCTG
GATCTGCTCGAAGTGGAAATGTGTTCCCGGTTGGGGGTAAAGCGAAAAAG
TCAAGGCTAGATGATGCATGGCACTGGCAACATGACGAGAAAGAATACGA
GCACATCATGACCGTTCTAGACAGAGATGGCGGTTTTGGCCAAAATCATT
CCGATCCCGCATTTTATGCCCGTTTCCCCACGCTTTAAATGAGTGTTAAG
GATGTAGCTCTCGTCTCTCCCGATGATAGCACGATGCAAGTTGTGGTGAA
GACTAGCATCGATGATCAGTTCGCCACTTTGGTCGCCTCGATCTTCGCGG
ATAGAAACCGGTTGGCAATCCCTTTCGGTCGTGTTGAAGAACAGCTAGAT
TCTCTGAGGGACTTGACAATGAACTGTGCTCCAGCAACTGCTGCAACTAG
ACTGGGCCCAAGGAGGGCAGGGTGCAGGACTGCATCTGGATCTGCTCGAA
GTGGAAATGTGTTCCCGGTTGGGGGTAAAGCGAAAAAGTCAAGGCTAGAT
GATGCATGGCACTGGCAACATGACGAGAAAGAATACGAGCACATCATGAC
CGTTCTAGACAGAGATGGCGGTTTTGGCCAAAATCATTCCGATCCCGCAT
TTTATGCCCGTTTCCCCACGCTTTAA
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