mRNA_F-serratus_M_contig1257.1923.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1257.1923.1 vs. uniprot
Match: D7FMA6_ECTSI (Ankyrin domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMA6_ECTSI) HSP 1 Score: 249 bits (637), Expect = 7.020e-73 Identity = 192/423 (45.39%), Postives = 225/423 (53.19%), Query Frame = 3
Query: 234 TGAESPCQGISMENPSTVYYPIIRSS---VPTVRLTPGDRFRSNASAFATPGPGAY-TPKYDGV---RYRVPGAVLWTRPETVVDPGCCKPASS-----WKGFGYGCSMKEHIDYGACLDGRCCMRHSVERKNASWVVQSQGKRCDQTRHLPSTRTRSSDEGQRATRSETEGQKGAVALCSYGSDGSLSSHPRSGRSISVSRRAVNTARVDQFGRKRAPLHFASKRNEVSIVDRLCRQGDDINAVDECGQTXXXXXXXXXXXXXXXXXXXXXE---QDAELDDTPTLTATEHPYRGGTAIVNAQDDNGRTPLYLGCLHGHERVVRALLMAGADPAMVDAQGKSPQEVTEQHNIYQLLQFKVDIPLVEANIATLGESGRPTERRIREADFARNCLDLVKVKWEERRLMAAVKALKEEQAMYAAA 1457
+GAES G S + P +Y P I S PT +P RF F TPGPG Y P G R PG V WT +T D +P W+GFG GCS++EHIDYGACLDGRCC RHSVE+KNA V Q L R R S R + + A + DG+ S + AV + RKR PLHFAS+R E+S+VDRLC QGDD NAVDE G XXXXXXXXXXXXXXXX E Q A ++ P A + P R A N QDD GRTPLYL C GHER VRALL AGA P +VD +GK QEV IYQLLQFK D+ LV+ANIA L R ER+ ++ A + EE RL AAV AL+ ++ YAAA
Sbjct: 3 SGAESAVPGASRDTPGAIYDPNIGGSSAPAPTTLFSPASRFPVGQKVFDTPGPGQYYNPAGAGASACRPAGPGVVAWTGIDTFADSEWSRPVPPPRLRPWQGFGNGCSVQEHIDYGACLDGRCCSRHSVEKKNALLVAQ----------FLDGQRQRRSPRSPEPAREDASPSSNSPAT--HNEDGTPLSFASADVGGGGGEFAVGSGAARAAVRKRTPLHFASERGELSLVDRLCFQGDDRNAVDERGFXXXXXXXXXXXXXXXXXLLQGDENEVQPAGGENAPRGAAPKRP-RQLPADPNVQDDKGRTPLYLACHRGHERAVRALLKAGACPDLVDIRGKPAQEVAGAQKIYQLLQFKADVSLVKANIAALEGRQRNEERQRKKVAQAAALKEXXXXXAEELRLKAAVSALENKREAYAAA 412
BLAST of mRNA_F-serratus_M_contig1257.1923.1 vs. uniprot
Match: A0A6H5KH12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH12_9PHAE) HSP 1 Score: 252 bits (643), Expect = 2.310e-72 Identity = 196/430 (45.58%), Postives = 232/430 (53.95%), Query Frame = 3
Query: 216 FGTGRSTGAESPCQGISMENPSTVYYPIIRSS---VPTVRLTPGDRFRSNASAFATPGPGAY-TPKYDGVRYRVP---GAVLWTRPETVVDPGCCKPASS-----WKGFGYGCSMKEHIDYGACLDGRCCMRHSVERKNASWVVQSQGKRCDQTRHLPSTRTRSSDEGQRATRSETEGQKGAVALCSYGSDGSLSSHPRSGRSISVSRRAVNTARVDQFGRKRAPLHFASKRNEVSIVDRLCRQGDDINAVDECGQTXXXXXXXXXXXXXXXXXXXXXE----QDAELDDTPTLTATEHPYRGGTAIVNAQDDNGRTPLYLGCLHGHERVVRALLMAGADPAMVDAQGKSPQEVTEQHNIYQLLQFKVDIPLVEANIATLGESGRPTERRIREADFARNCLDLVKVKWEERRLMAAVKALKEEQAMYAAA 1457
FG G ++G ES G S + P +Y P I S PT +P RF F T GPG Y P G P G V WT +T D K W+GFG GCS++EHIDYGACLDGRCC RHS+E+KNA VVQ L R R S + + + A + DG+ S +G AV + RKR PLHFAS+R E+S+VDRLC QGDD NAVDE G XXXXXXXXXXXXXXXXXX + Q A + P A P R A N QDD GRTPLYL C GHER VRALL AGA P +VD +GK QEV NIYQLLQFK D+ LV+ANIA L R ER+ ++ A +L ++K EE RL AAV AL+ ++ YAAA
Sbjct: 116 FGGGMASGDESAVPGASRDTPGAIYDPNIGGSSAPAPTTLFSPASRFPVGQKVFDTLGPGQYYNPAGAGASACRPAGSGVVAWTGIDTFADSEWSKSVPPPRLRPWQGFGNGCSVQEHIDYGACLDGRCCSRHSIEKKNALLVVQ----------FLDGQRHRRSPQSPEPVHEDASPSSRSPAT--HNEDGTPLSFSSAGVGGGGGELAVGSGAARAAVRKRTPLHFASERGELSLVDRLCFQGDDRNAVDERGFXXXXXXXXXXXXXXXXXXXQGDDENEVQPAGGETAPRGAAPTRP-RQVPADPNVQDDKGRTPLYLACHRGHERAVRALLKAGACPDLVDIRGKPAQEVAGAQNIYQLLQFKADVSLVKANIAALEGRQRNEERQRKKVAQAAALKELAELKEEELRLKAAVSALENKREAYAAA 532
BLAST of mRNA_F-serratus_M_contig1257.1923.1 vs. uniprot
Match: A0A7S1UHW6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UHW6_9STRA) HSP 1 Score: 80.1 bits (196), Expect = 5.530e-12 Identity = 69/256 (26.95%), Postives = 104/256 (40.62%), Query Frame = 3
Query: 498 KGFGYGCSMKEHIDYGACLDGRCCMRHSVERKNASWVVQSQGKRCDQTRHLPSTRTRSSDEGQRATRSETEGQKGAVALCSYGS-DGSLSSHPRSGRSISVSR-RAVNTARVDQFGRKRAPLHFASKRNEVSIVDRLCRQGDDINAVDECGQTXXXXXXXXXXXXXXXXXXXXXEQDAELDDTPTLTATEHPYRGGTAIVNAQDDNGRTPLYLGCLHGHERVVRALLMAGADPAMVDAQGKSPQEVTEQHNIYQLL 1259
KGFG+GCS+ +HI +G CLD C R E N + ++ R G ++ E K A SY S + S+ S ++ + R R + V RK+ LH A E ++VD LC +G D++ VDE G + D P ++ + T +N QD +GRT L L +R V LL GAD + D +G + ++ +YQ+L
Sbjct: 313 KGFGFGCSVAQHIKFGGCLDMNCSRRAGWETSNGTRILA----------------LRDEAAGFGGGNNKLEDDKTAQTTPSYASATTATSTSTNSFETVDMRRIRNIEVHFVPDVPRKKV-LHLACLHGEAALVDDLCVRGADVDEVDEEGMSPLMIAAHEGHAHIVRRLLFNA-------DFPQVSRVGFVSQRATPEINLQDKHGRTALMHASLESKKRCVELLLEHGADSRIRDERGLTAVDIAGSQALYQVL 544
BLAST of mRNA_F-serratus_M_contig1257.1923.1 vs. uniprot
Match: A0A836CHI4_9STRA (Reverse transcriptase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHI4_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 8.350e-8 Identity = 42/103 (40.78%), Postives = 51/103 (49.51%), Query Frame = 3
Query: 309 SVPTVRLTPGDRFRSNASAFAT--PGPGAYTPKYDGVRYRVPGAVLWTRPETVV-----DPGCCKPASSWKGFGYGCSMKEHIDYGACLDGRCCMRHSVERKN 596
S P V DRFRS + PGPG YT V G + RP + D G +P W +GYGCS+ EH+ YGACLDG+C RH+ ER N
Sbjct: 466 SRPCVVFNEVDRFRSTTAQDYEDDPGPGTYT-----VTAASGGTSVKLRPHLLRQQQQNDDGN-EPPQEWGTYGYGCSLDEHVLYGACLDGKCLQRHAAERLN 562
BLAST of mRNA_F-serratus_M_contig1257.1923.1 vs. uniprot
Match: A0A6H5HWH9_9HYME (Uncharacterized protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5HWH9_9HYME) HSP 1 Score: 61.2 bits (147), Expect = 5.750e-6 Identity = 46/144 (31.94%), Postives = 64/144 (44.44%), Query Frame = 3
Query: 852 PLHFASKR-NEVSIVDRLCRQGDDINAVDECGQTXXXXXXXXXXXXXXXXXXXXXEQDAELDDTPTLTATEHPYRGGTAIVNAQDDNGRTPLYLGCLHGHERVVRALLMAGADPAMVDAQGKSPQE-VTEQHNIYQLLQFKVDI 1277
PLH A K N+V VD L R+G + N +E G T L + E + TA++NAQD G TPL+L H H+ V LL G+DP++ +AQG++P V + Y +L DI
Sbjct: 912 PLHLALKDGNDVGTVDELLRRGANPNLANEDGSTSLHVICRNNKYGYYMIQRL-------------LESVEDFQQ--TALINAQDKRGDTPLHLAVKHCHDEEVELLLRRGSDPSLANAQGQTPLHGVCRSNGKYYMLPLFFDI 1040
BLAST of mRNA_F-serratus_M_contig1257.1923.1 vs. uniprot
Match: A0A6H5J4B9_9HYME (Uncharacterized protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5J4B9_9HYME) HSP 1 Score: 57.8 bits (138), Expect = 2.340e-5 Identity = 41/154 (26.62%), Postives = 64/154 (41.56%), Query Frame = 3
Query: 852 PLHFASKRNEVSIVDRLCRQGDDINAVDECGQTXXXXXXXXXXXXXXXXXXXXXEQDAELDDTPTLTATEHPYRGGTAIVNAQDDNGRTPLYLGCLHGHERVVRALLMAGADPAMVDAQGKSPQEVTEQHNIY--QLLQFKVDIPLVEANIATL 1307
PLH A + + L ++G ++N + G+T D T V+AQD GRTPL+L +G +V LL GA+P +V+A G +P VT QH Y +++ K+ + +AN T+
Sbjct: 153 PLHKALSWENKKLAELLLKRGANMNITNSHGETPLHIICDKYYDVNFVELLLKIADDQHQ----------------TVQVDAQDYQGRTPLFLAIENGRMKVAELLLRRGANPNLVNAYGSTPLHVTIQHGYYVEEVMFLKIFFEIADANHQTV 290 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1257.1923.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1257.1923.1 >prot_F-serratus_M_contig1257.1923.1 ID=prot_F-serratus_M_contig1257.1923.1|Name=mRNA_F-serratus_M_contig1257.1923.1|organism=Fucus serratus male|type=polypeptide|length=414bp MENPSTVYYPIIRSSVPTVRLTPGDRFRSNASAFATPGPGAYTPKYDGVRback to top mRNA from alignment at F-serratus_M_contig1257:205927..210076+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1257.1923.1 ID=mRNA_F-serratus_M_contig1257.1923.1|Name=mRNA_F-serratus_M_contig1257.1923.1|organism=Fucus serratus male|type=mRNA|length=4150bp|location=Sequence derived from alignment at F-serratus_M_contig1257:205927..210076+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1257:205927..210076+ >mRNA_F-serratus_M_contig1257.1923.1 ID=mRNA_F-serratus_M_contig1257.1923.1|Name=mRNA_F-serratus_M_contig1257.1923.1|organism=Fucus serratus male|type=CDS|length=2484bp|location=Sequence derived from alignment at F-serratus_M_contig1257:205927..210076+ (Fucus serratus male)back to top |