mRNA_F-serratus_M_contig1255.1909.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1255.1909.1
Unique NamemRNA_F-serratus_M_contig1255.1909.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1255.1909.1 vs. uniprot
Match: A0A6H5JYE2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYE2_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 1.350e-13
Identity = 32/60 (53.33%), Postives = 43/60 (71.67%), Query Frame = 1 
Query:   13 IYTTLRTRRLLWAGTLLRMSSGRLPKRIVFGNLEGALRRGRGGKEKEWTDCVQSDIRAFG 192
            +  T+R RRLL+AG+L R   GRLPKR++FG L G  +R RGG+E+ W  CV  D++AFG
Sbjct:   59 VEATIRQRRLLFAGSLARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFG 118
[Close]
BLAST of mRNA_F-serratus_M_contig1255.1909.1 vs. uniprot
Match: A0A6H5JAH7_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAH7_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 5.990e-13
Identity = 32/57 (56.14%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:   22 TLRTRRLLWAGTLLRMSSGRLPKRIVFGNLEGALRRGRGGKEKEWTDCVQSDIRAFG 192
            T+R RRLL+AG L R   GRLPKR++FG L G  +R RGG+E+ W  CV  D++AFG
Sbjct:  194 TIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFG 250
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BLAST of mRNA_F-serratus_M_contig1255.1909.1 vs. uniprot
Match: A0A6H5JFE2_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFE2_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 1.090e-12
Identity = 32/60 (53.33%), Postives = 42/60 (70.00%), Query Frame = 1 
Query:   13 IYTTLRTRRLLWAGTLLRMSSGRLPKRIVFGNLEGALRRGRGGKEKEWTDCVQSDIRAFG 192
            +  T+R RRLL+AG L R   GRLPKR++FG L G  +R RGG+E+ W  CV  D++AFG
Sbjct:  321 VEATIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFG 380
[Close]
BLAST of mRNA_F-serratus_M_contig1255.1909.1 vs. uniprot
Match: A0A6H5JLT1_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLT1_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 1.100e-12
Identity = 32/60 (53.33%), Postives = 42/60 (70.00%), Query Frame = 1 
Query:   13 IYTTLRTRRLLWAGTLLRMSSGRLPKRIVFGNLEGALRRGRGGKEKEWTDCVQSDIRAFG 192
            +  T+R RRLL+AG L R   GRLPKR++FG L G  +R RGG+E+ W  CV  D++AFG
Sbjct:  454 VEATIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFG 513
[Close]
BLAST of mRNA_F-serratus_M_contig1255.1909.1 vs. uniprot
Match: A0A6H5KS82_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS82_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 2.080e-12
Identity = 32/60 (53.33%), Postives = 41/60 (68.33%), Query Frame = 1 
Query:   13 IYTTLRTRRLLWAGTLLRMSSGRLPKRIVFGNLEGALRRGRGGKEKEWTDCVQSDIRAFG 192
            +  T+R RRLL+AG L R   GRLPKR++FG L G  +R RGG+E+ W  CV  D+ AFG
Sbjct:  543 VEATIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLNAFG 602
[Close]
BLAST of mRNA_F-serratus_M_contig1255.1909.1 vs. uniprot
Match: A0A6H5K1X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1X4_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 7.160e-12
Identity = 31/60 (51.67%), Postives = 41/60 (68.33%), Query Frame = 1 
Query:   13 IYTTLRTRRLLWAGTLLRMSSGRLPKRIVFGNLEGALRRGRGGKEKEWTDCVQSDIRAFG 192
            +  T+R RRLL+AG L R   GRLPKR++ G L G  +R RGG+E+ W  CV  D++AFG
Sbjct:  215 VEATIRQRRLLFAGALARQPDGRLPKRLMLGELAGGEKRRRGGQEQNWPKCVLDDLKAFG 274
[Close]
BLAST of mRNA_F-serratus_M_contig1255.1909.1 vs. uniprot
Match: A0A6H5KQ16_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ16_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 1.550e-10
Identity = 28/57 (49.12%), Postives = 39/57 (68.42%), Query Frame = 1 
Query:   13 IYTTLRTRRLLWAGTLLRMSSGRLPKRIVFGNLEGALRRGRGGKEKEWTDCVQSDIR 183
            +  T+R RR+L+AG L R   GRLPKR++FG L G  +R RGG+E+ W  CV  D++
Sbjct:  191 VAATIRQRRILFAGALTRQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLK 247
[Close]
BLAST of mRNA_F-serratus_M_contig1255.1909.1 vs. uniprot
Match: A0A6H5JTZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTZ8_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 1.840e-10
Identity = 29/60 (48.33%), Postives = 39/60 (65.00%), Query Frame = 1 
Query:   13 IYTTLRTRRLLWAGTLLRMSSGRLPKRIVFGNLEGALRRGRGGKEKEWTDCVQSDIRAFG 192
            +  T+R RRLL+AG + R   GRLPKR+V G L G  +R   G+E+ W  CV  D++AFG
Sbjct:  172 VEATIRQRRLLFAGAMARQPDGRLPKRLVLGELAGGEKRRSAGQEQNWPKCVLDDLKAFG 231
[Close]
BLAST of mRNA_F-serratus_M_contig1255.1909.1 vs. uniprot
Match: A0A6H5K2V4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2V4_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 6.650e-10
Identity = 29/60 (48.33%), Postives = 39/60 (65.00%), Query Frame = 1 
Query:   13 IYTTLRTRRLLWAGTLLRMSSGRLPKRIVFGNLEGALRRGRGGKEKEWTDCVQSDIRAFG 192
            +  T+R RRLL A  L R   GRLPKR++ G L G  +R RGG+++ W  CV  D++AFG
Sbjct:  171 VEATIRQRRLLLARALARQPDGRLPKRLMLGELAGGEKRRRGGQKQNWPKCVLDDLKAFG 230
[Close]
BLAST of mRNA_F-serratus_M_contig1255.1909.1 vs. uniprot
Match: A0A6H5K2V9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2V9_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 7.730e-10
Identity = 27/50 (54.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:   43 LWAGTLLRMSSGRLPKRIVFGNLEGALRRGRGGKEKEWTDCVQSDIRAFG 192
            L+AG L R   GRLPKR++FG L G  +R RGG+E+ W  CV  D++AFG
Sbjct:  287 LFAGALARQPDGRLPKRLMFGELAGGEKRSRGGQEQNWPKCVLDDLKAFG 336
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1255.1909.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JYE2_9PHAE1.350e-1353.33Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JAH7_9PHAE5.990e-1356.14Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JFE2_9PHAE1.090e-1253.33Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JLT1_9PHAE1.100e-1253.33Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KS82_9PHAE2.080e-1253.33Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K1X4_9PHAE7.160e-1251.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQ16_9PHAE1.550e-1049.12Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JTZ8_9PHAE1.840e-1048.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2V4_9PHAE6.650e-1048.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2V9_9PHAE7.730e-1054.00Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1255contigF-serratus_M_contig1255:259861..260070 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size210
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929179.2368262-CDS-F-serratus_M_contig1255:259860..2600701622929179.2368262-CDS-F-serratus_M_contig1255:259860..260070Fucus serratus maleCDSF-serratus_M_contig1255 259861..260070 -
1690962739.056381-CDS-F-serratus_M_contig1255:259860..2600701690962739.056381-CDS-F-serratus_M_contig1255:259860..260070Fucus serratus maleCDSF-serratus_M_contig1255 259861..260070 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1255.1909.1prot_F-serratus_M_contig1255.1909.1Fucus serratus malepolypeptideF-serratus_M_contig1255 259861..260070 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1255.1909.1

>prot_F-serratus_M_contig1255.1909.1 ID=prot_F-serratus_M_contig1255.1909.1|Name=mRNA_F-serratus_M_contig1255.1909.1|organism=Fucus serratus male|type=polypeptide|length=70bp
RRPYIYTTLRTRRLLWAGTLLRMSSGRLPKRIVFGNLEGALRRGRGGKEK
EWTDCVQSDIRAFGISGDWK
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mRNA from alignment at F-serratus_M_contig1255:259861..260070-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1255.1909.1 ID=mRNA_F-serratus_M_contig1255.1909.1|Name=mRNA_F-serratus_M_contig1255.1909.1|organism=Fucus serratus male|type=mRNA|length=210bp|location=Sequence derived from alignment at F-serratus_M_contig1255:259861..260070- (Fucus serratus male)
CGGCGTCCATATATTTATACGACATTGCGAACGAGAAGACTGCTGTGGGC
GGGGACGCTCCTCAGAATGAGCAGCGGGCGGCTGCCAAAGCGAATCGTTT
TTGGAAACCTTGAGGGTGCACTACGGAGAGGACGGGGTGGGAAGGAGAAA
GAGTGGACCGATTGCGTCCAGAGCGACATCCGGGCGTTTGGCATATCCGG
GGATTGGAAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1255:259861..260070-

>mRNA_F-serratus_M_contig1255.1909.1 ID=mRNA_F-serratus_M_contig1255.1909.1|Name=mRNA_F-serratus_M_contig1255.1909.1|organism=Fucus serratus male|type=CDS|length=420bp|location=Sequence derived from alignment at F-serratus_M_contig1255:259861..260070- (Fucus serratus male)
CGGCGTCCATATATTTATACGACATTGCGAACGAGAAGACTGCTGTGGGC
GGGGACGCTCCTCAGAATGAGCAGCGGGCGGCTGCCAAAGCGAATCGTTT
TTGGAAACCTTGAGGGTGCACTACGGAGAGGACGGGGTGGGAAGGAGAAA
GAGTGGACCGATTGCGTCCAGAGCGACATCCGGGCGTTTGGCATATCCGG
GGATTGGAAACGGCGTCCATATATTTATACGACATTGCGAACGAGAAGAC
TGCTGTGGGCGGGGACGCTCCTCAGAATGAGCAGCGGGCGGCTGCCAAAG
CGAATCGTTTTTGGAAACCTTGAGGGTGCACTACGGAGAGGACGGGGTGG
GAAGGAGAAAGAGTGGACCGATTGCGTCCAGAGCGACATCCGGGCGTTTG
GCATATCCGGGGATTGGAAA
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