mRNA_F-serratus_M_contig1255.1907.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1255.1907.1
Unique NamemRNA_F-serratus_M_contig1255.1907.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1255.1907.1 vs. uniprot
Match: A0A6H5JPJ1_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPJ1_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 5.850e-41
Identity = 75/144 (52.08%), Postives = 98/144 (68.06%), Query Frame = 3
Query:    6 MFPVRKDSGDDLPDRYVVGACLPDHVGCEVTVESLLELTVGSAMFSLVLQIDGSRNMPPGLIPKLLAWCGRGEGRITACWRHGGCFTY-KKHLVLIYECKISERQSSIVCCAKGDANNKIAGGILEDVEEEVDNLIRDPRYGFP 434
            MF VR +      D Y+V +CLPDHVGC V  + LL L VG A+FS  LQ+ G + +PPGLIP+LLAWC +G+ RIT CW+ G CF + +KHLVL+YE +    +S I C A G A+N+ AGG L+DV  E+  L+ DP+YGFP
Sbjct:  668 MFRVRHNK-----DHYIVPSCLPDHVGCTVDAKKLLGLDVGGAIFSRKLQLGGEQPVPPGLIPRLLAWCSQGDARITTCWKRGVCFAFNRKHLVLLYEHRKEAGRSVIECHAMGSAHNEKAGGTLDDVVAELRRLVGDPKYGFP 806          
BLAST of mRNA_F-serratus_M_contig1255.1907.1 vs. uniprot
Match: A0A6H5JSN1_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSN1_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 4.350e-39
Identity = 72/143 (50.35%), Postives = 102/143 (71.33%), Query Frame = 3
Query:    6 MFPVRKDSGDDLPDRYVVGACLPDHVGCEVTVESLLELTVGSAMFSLVLQIDGSRNMPPGLIPKLLAWCGRGEGRITACWRHGGCFTYKKHLVLIYECKISERQSSIVCCAKGDANNKIAGGILEDVEEEVDNLIRDPRYGFP 434
            MF VR++      D Y+V +CLPDHVGC++  + L+EL VG A+FS  L+  G+ ++PPGLIP+LLAWCG+G+ RITACW+ G CF++K+HLVL+YE + + R + I C A G A+++ A   LEDV  E+  L+ D +YGFP
Sbjct:  500 MFRVRQNE-----DHYIVPSCLPDHVGCDMDPKKLMELEVGGAIFSRRLEFVGAHSVPPGLIPRLLAWCGQGDERITACWKRGVCFSFKEHLVLLYEHRDAGR-AVIECHAMGSAHDEKAWRTLEDVVTELGQLVGDAKYGFP 636          
BLAST of mRNA_F-serratus_M_contig1255.1907.1 vs. uniprot
Match: A0A6H5K9A9_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9A9_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 5.250e-38
Identity = 68/143 (47.55%), Postives = 95/143 (66.43%), Query Frame = 3
Query:    6 MFPVRKDSGDDLPDRYVVGACLPDHVGCEVTVESLLELTVGSAMFSLVLQIDGSRNMPPGLIPKLLAWCGRGEGRITACWRHGGCFTYKKHLVLIYECKISERQSSIVCCAKGDANNKIAGGILEDVEEEVDNLIRDPRYGFP 434
            M+ VR      +PDRYVV +CLP+  G EV    +LEL  GSA++S  L++ G+  +PPGL+P+LLAWCGRGEG I ACW+ G CF +K H+VL+YE + +   S I C A+G   ++ A   L D+ ++V+ LI D +YGFP
Sbjct:  544 MYRVRDGHDAFVPDRYVVASCLPNKAGPEVDPGKMLELKAGSAVYSQKLKLVGAHAVPPGLVPRLLAWCGRGEGHIKACWKRGVCFAFKNHMVLLYEVRDTAGNSWIECHARGSMFDESARTALNDIGDQVNELINDRKYGFP 686          
BLAST of mRNA_F-serratus_M_contig1255.1907.1 vs. uniprot
Match: D7FU35_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU35_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 9.990e-38
Identity = 69/144 (47.92%), Postives = 98/144 (68.06%), Query Frame = 3
Query:    6 MFPVRKDSGDDLPDRYVVGACLPDHVGCEVTVESLLELTVGSAMFSLVLQIDGSRNMPPGLIPKLLAWCGRGEGRITACWRHGGCFTYKKHLVLIYECKISERQSSIVCCAKGD-ANNKIAGGILEDVEEEVDNLIRDPRYGFP 434
            M+ VR      +PDRYVV +CLP+  G  V    +LEL +GSA++S  L++ G+  +PPGL+P+LLAWCGRGEGRI ACW+ G CF +K HLVL+YE +  +  S I C A+G+ +++  A   L+D+ ++V  LI D +YGFP
Sbjct:  818 MYRVRDGQHAFVPDRYVVASCLPNKAGLNVDPGKILELKMGSAIYSQKLKLVGAHAVPPGLVPRLLAWCGRGEGRIKACWKRGVCFAFKNHLVLLYEVRAIDGTSWIECHARGNVSDDDSARTALKDIGDQVHELINDHKYGFP 961          
BLAST of mRNA_F-serratus_M_contig1255.1907.1 vs. uniprot
Match: A0A6H5K561_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K561_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 2.880e-23
Identity = 53/143 (37.06%), Postives = 78/143 (54.55%), Query Frame = 3
Query:    6 MFPVRKDSGDDLPDRYVVGACLPDHVGCEVTVESLLELTVGSAMFSLVLQIDGSRNMPPGLIPKLLAWCGRGEGRITACWRHGGCFTYKKHLVLIYECKISERQSSIVCCAKGDANNKIAGGILEDVEEEVDNLIRDPRYGFP 434
            M+ VR      +PDRYVV  C P+  G  V    + +           L++ G+  +PPGL+P+LLAWCGRGEGR   C + G     KKHLVL+ E + +   S I C  +G+  ++  G +L+D + ++  L  D +YGFP
Sbjct:    1 MYRVRDGHHAFVPDRYVVHYCFPNTDGRRVDPGKIFQ----------TLKLVGAHAVPPGLVPRLLAWCGRGEGRYKECCKRGLLLEIKKHLVLLIELRSTHGASWIECDMRGNLFDESPGKVLKDKDVQIHELFSDNKYGFP 133          
BLAST of mRNA_F-serratus_M_contig1255.1907.1 vs. uniprot
Match: A0A6H5JXU4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXU4_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 1.010e-22
Identity = 46/98 (46.94%), Postives = 66/98 (67.35%), Query Frame = 3
Query:    3 MMFPVRKDSGDDLPDRYVVGACLPDHVGCEVTVESLLELTVGSAMFSLVLQIDGSRNMPPGLIPKLLAWCGRGEGRITACWRHGGCFTYKKHLVLIYE 296
            +++ VR      +PDR VV +CLP+  G EV   ++LEL   SA++   L++  +  +PPGL+P+ LAWCGRGEGRI ACW+ G CF +K HL+L+ E
Sbjct:  140 LVYRVRDGQHAFVPDRNVVASCLPNKAGPEVDPGNILELETASAIYLQKLKLVVAHAVPPGLVPRELAWCGRGEGRINACWKRGVCFAFKNHLMLLNE 237          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1255.1907.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JPJ1_9PHAE5.850e-4152.08Roc domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JSN1_9PHAE4.350e-3950.35Roc domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K9A9_9PHAE5.250e-3847.55Roc domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FU35_ECTSI9.990e-3847.92LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5K561_9PHAE2.880e-2337.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXU4_9PHAE1.010e-2246.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1255contigF-serratus_M_contig1255:78287..78720 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score149.1
Seed ortholog evalue1.6e-33
Seed eggNOG ortholog2880.D7FU35
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size434
Cds size432
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929179.1290412-UTR-F-serratus_M_contig1255:78286..782881622929179.1290412-UTR-F-serratus_M_contig1255:78286..78288Fucus serratus maleUTRF-serratus_M_contig1255 78287..78288 +
1690962739.0056376-UTR-F-serratus_M_contig1255:78286..782881690962739.0056376-UTR-F-serratus_M_contig1255:78286..78288Fucus serratus maleUTRF-serratus_M_contig1255 78287..78288 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929179.1394904-CDS-F-serratus_M_contig1255:78288..787201622929179.1394904-CDS-F-serratus_M_contig1255:78288..78720Fucus serratus maleCDSF-serratus_M_contig1255 78289..78720 +
1690962739.0181725-CDS-F-serratus_M_contig1255:78288..787201690962739.0181725-CDS-F-serratus_M_contig1255:78288..78720Fucus serratus maleCDSF-serratus_M_contig1255 78289..78720 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1255.1907.1prot_F-serratus_M_contig1255.1907.1Fucus serratus malepolypeptideF-serratus_M_contig1255 78289..78720 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1255.1907.1

>prot_F-serratus_M_contig1255.1907.1 ID=prot_F-serratus_M_contig1255.1907.1|Name=mRNA_F-serratus_M_contig1255.1907.1|organism=Fucus serratus male|type=polypeptide|length=144bp
MMFPVRKDSGDDLPDRYVVGACLPDHVGCEVTVESLLELTVGSAMFSLVL
QIDGSRNMPPGLIPKLLAWCGRGEGRITACWRHGGCFTYKKHLVLIYECK
ISERQSSIVCCAKGDANNKIAGGILEDVEEEVDNLIRDPRYGFP
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mRNA from alignment at F-serratus_M_contig1255:78287..78720+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1255.1907.1 ID=mRNA_F-serratus_M_contig1255.1907.1|Name=mRNA_F-serratus_M_contig1255.1907.1|organism=Fucus serratus male|type=mRNA|length=434bp|location=Sequence derived from alignment at F-serratus_M_contig1255:78287..78720+ (Fucus serratus male)
GGATGATGTTTCCTGTCCGAAAGGATTCTGGGGATGACTTGCCCGATCGC TACGTTGTCGGCGCTTGTTTGCCTGACCACGTGGGGTGCGAGGTGACCGT GGAATCGCTTTTGGAGCTCACTGTTGGAAGTGCGATGTTTAGTTTGGTAC TGCAGATAGACGGGTCGAGGAACATGCCGCCAGGGCTTATACCGAAGCTG CTTGCGTGGTGCGGGCGCGGCGAAGGGCGGATCACTGCGTGCTGGCGGCA TGGGGGCTGTTTCACGTACAAGAAGCATTTGGTATTGATCTACGAGTGCA AAATTTCCGAGAGACAGTCATCGATTGTGTGCTGCGCCAAGGGGGACGCG AACAACAAGATAGCCGGGGGTATATTGGAGGACGTTGAAGAAGAGGTAGA CAATCTCATTCGCGACCCACGCTATGGGTTCCCA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1255:78287..78720+

>mRNA_F-serratus_M_contig1255.1907.1 ID=mRNA_F-serratus_M_contig1255.1907.1|Name=mRNA_F-serratus_M_contig1255.1907.1|organism=Fucus serratus male|type=CDS|length=864bp|location=Sequence derived from alignment at F-serratus_M_contig1255:78287..78720+ (Fucus serratus male)
ATGATGTTTCCTGTCCGAAAGGATTCTGGGGATGACTTGCCCGATCGCTA
CGTTGTCGGCGCTTGTTTGCCTGACCACGTGGGGTGCGAGGTGACCGTGG
AATCGCTTTTGGAGCTCACTGTTGGAAGTGCGATGTTTAGTTTGGTACTG
CAGATAGACGGGTCGAGGAACATGCCGCCAGGGCTTATACCGAAGCTGCT
TGCGTGGTGCGGGCGCGGCGAAGGGCGGATCACTGCGTGCTGGCGGCATG
GGGGCTGTTTCACGTACAAGAAGCATTTGGTATTGATCTACGAGTGCAAA
ATTTCCGAGAGACAGTCATCGATTGTGTGCTGCGCCAAGGGGGACGCGAA
CAACAAGATAGCCGGGGGTATATTGGAGGACGTTGAAGAAGAGGTAGACA
ATCTCATTCGCGACCCACGCTATGGGTTCCCAATGATGTTTCCTGTCCGA
AAGGATTCTGGGGATGACTTGCCCGATCGCTACGTTGTCGGCGCTTGTTT
GCCTGACCACGTGGGGTGCGAGGTGACCGTGGAATCGCTTTTGGAGCTCA
CTGTTGGAAGTGCGATGTTTAGTTTGGTACTGCAGATAGACGGGTCGAGG
AACATGCCGCCAGGGCTTATACCGAAGCTGCTTGCGTGGTGCGGGCGCGG
CGAAGGGCGGATCACTGCGTGCTGGCGGCATGGGGGCTGTTTCACGTACA
AGAAGCATTTGGTATTGATCTACGAGTGCAAAATTTCCGAGAGACAGTCA
TCGATTGTGTGCTGCGCCAAGGGGGACGCGAACAACAAGATAGCCGGGGG
TATATTGGAGGACGTTGAAGAAGAGGTAGACAATCTCATTCGCGACCCAC
GCTATGGGTTCCCA
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