mRNA_F-serratus_M_contig1254.1906.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1254.1906.1
Unique NamemRNA_F-serratus_M_contig1254.1906.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1254.1906.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1254contigF-serratus_M_contig1254:272449..273726 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size836
Cds size480
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1254.1906.1prot_F-serratus_M_contig1254.1906.1Fucus serratus malepolypeptideF-serratus_M_contig1254 272452..273373 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929179.0192225-UTR-F-serratus_M_contig1254:272448..2724511622929179.0192225-UTR-F-serratus_M_contig1254:272448..272451Fucus serratus maleUTRF-serratus_M_contig1254 272449..272451 +
1690962738.9495797-UTR-F-serratus_M_contig1254:272448..2724511690962738.9495797-UTR-F-serratus_M_contig1254:272448..272451Fucus serratus maleUTRF-serratus_M_contig1254 272449..272451 +
1622929179.0931244-UTR-F-serratus_M_contig1254:273373..2737261622929179.0931244-UTR-F-serratus_M_contig1254:273373..273726Fucus serratus maleUTRF-serratus_M_contig1254 273374..273726 +
1690962738.9801354-UTR-F-serratus_M_contig1254:273373..2737261690962738.9801354-UTR-F-serratus_M_contig1254:273373..273726Fucus serratus maleUTRF-serratus_M_contig1254 273374..273726 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929179.0687275-CDS-F-serratus_M_contig1254:272451..2725751622929179.0687275-CDS-F-serratus_M_contig1254:272451..272575Fucus serratus maleCDSF-serratus_M_contig1254 272452..272575 +
1690962738.9608014-CDS-F-serratus_M_contig1254:272451..2725751690962738.9608014-CDS-F-serratus_M_contig1254:272451..272575Fucus serratus maleCDSF-serratus_M_contig1254 272452..272575 +
1622929179.0812137-CDS-F-serratus_M_contig1254:273017..2733731622929179.0812137-CDS-F-serratus_M_contig1254:273017..273373Fucus serratus maleCDSF-serratus_M_contig1254 273018..273373 +
1690962738.9706826-CDS-F-serratus_M_contig1254:273017..2733731690962738.9706826-CDS-F-serratus_M_contig1254:273017..273373Fucus serratus maleCDSF-serratus_M_contig1254 273018..273373 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1254.1906.1

>prot_F-serratus_M_contig1254.1906.1 ID=prot_F-serratus_M_contig1254.1906.1|Name=mRNA_F-serratus_M_contig1254.1906.1|organism=Fucus serratus male|type=polypeptide|length=160bp
MGFAIGLWAYSFVILSTVLVSGVLLVNFLRQILYWGYCWRSGCNKFLQPW
EAFKQRRQNARMLRERALSNPLWRRRSWLVVIRARRTRYLRTRGGRCSKW
FVFRRKGARDMCSLPLTVTETNMVISSWPSGADDSFREVVMKVVDLPEEE
LFRSIVSYI*
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mRNA from alignment at F-serratus_M_contig1254:272449..273726+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1254.1906.1 ID=mRNA_F-serratus_M_contig1254.1906.1|Name=mRNA_F-serratus_M_contig1254.1906.1|organism=Fucus serratus male|type=mRNA|length=1278bp|location=Sequence derived from alignment at F-serratus_M_contig1254:272449..273726+ (Fucus serratus male)
ATAATGGGATTCGCCATCGGATTGTGGGCCTATTCCTTCGTAATATTGAG
TACGGTACTTGTTTCTGGGGTACTCTTGGTCAATTTCCTGCGCCAAATCT
TATACTGGGGCTACTGCTGGAGGTCTGGTGGTAAGATATAGTTGACTGTT
GTTGATTTTTACACCCTGCAAAGTGTTTTTATTTTACCCTGTATCACGCA
ATGTTGCTGGATGGCTTCATACAGATCTCGACTGTCGAAATATGATGTGG
TTTTGGTGTTAAAAAACGCAGCAAGCACCTGTTGTGCTCCTTTTGTTCAT
TGCGGCCAAATGGCTTTTTTTGTATAATTTTCCTCTCGCGAGAGTCAAAT
ACTCGACACCTTGGCTTGTGAATGGCAGGCCAACCTACTGAAGATAACGG
TAAGAACCATCCTATTTGTGTTTTTGACGATGTCGTGGTGTATTCGTTTG
GTACATAGCACCAATCAATTCAAGGTCCAAAGAGGACGTCGCCGTTTTTG
ACAACGAAGCGTACAAACCTCATCCAAGTTTGAGCCCCGAACCATGCCCT
TGCCGCCTTCGCCCTGTAGGATGTAACAAATTCCTGCAACCTTGGGAAGC
ATTTAAGCAGAGGCGCCAGAATGCACGCATGCTCAgGGAAAGAGCATTGA
GTAACCCATTGTGGAGGCGTCGGTCCTGGCTCGTGGTCATCCGAGCGCGA
CGAACAAGGTACCTTCGGACCAGAGGGGGGCGATGTTCGAAGTGGTTTGT
GTTTAGACGCAAAGGTGCACGTGACATGTGCTCACTGCCCCTAACTGTAA
CTGAGACTAACATGGTGATCAGCAGCTGGCCGAGCGGAGCGGATGATAGC
TTTCGGGAGGTGGTTATGAAGGTTGTTGACCTACCTGAGGAGGAATTGTT
TCGAAGCATCGTCTCTTACATCTAAAGGATTCGACCGCGTAGAGCTTTGG
ATTTAAGATTGCCCCTAGAAAAGCTTATGACAACGCCAAGGGATGATGTC
GGTTTACCTAGGATCTGAGGCAAAATCGTGGTATTTGATGATCCTTGGGT
AGAAAGAAGAACAACTGTGATCATATACATCCTGGAAGCACATAACCTTC
AATAAACACCCCGACTGGGGGTAGAAAGAGAAGTCTTGGTCGATACTTAC
TAATTTGCTATGTTCCAGCACGAGGACTCGAAGATAGTACCATGATGGTG
TTCGGTGTATTCGTTGGGATAGCTTATATTGAGCAGTGGGAGAGAATCAT
GGAACAGCTATGATTCTCGATGGGGTTA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1254:272449..273726+

>mRNA_F-serratus_M_contig1254.1906.1 ID=mRNA_F-serratus_M_contig1254.1906.1|Name=mRNA_F-serratus_M_contig1254.1906.1|organism=Fucus serratus male|type=CDS|length=960bp|location=Sequence derived from alignment at F-serratus_M_contig1254:272449..273726+ (Fucus serratus male)
ATGGGATTCGCCATCGGATTGTGGGCCTATTCCTTCGTAATATTGAGTAC
GGTACTTGTTTCTGGGGTACTCTTGGTCAATTTCCTGCGCCAAATCTTAT
ACTGGGGCTACTGCTGGAGGTCTGATGGGATTCGCCATCGGATTGTGGGC
CTATTCCTTCGTAATATTGAGTACGGTACTTGTTTCTGGGGTACTCTTGG
TCAATTTCCTGCGCCAAATCTTATACTGGGGCTACTGCTGGAGGTCTGGA
TGTAACAAATTCCTGCAACCTTGGGAAGCATTTAAGCAGAGGCGCCAGAA
TGCACGCATGCTCAgGGAAAGAGCATTGAGTAACCCATTGTGGAGGCGTC
GGTCCTGGCTCGTGGTCATCCGAGCGCGACGAACAAGGTACCTTCGGACC
AGAGGGGGGCGATGTTCGAAGTGGTTTGTGTTTAGACGCAAAGGTGCACG
TGACATGTGCTCACTGCCCCTAACTGTAACTGAGACTAACATGGTGATCA
GCAGCTGGCCGAGCGGAGCGGATGATAGCTTTCGGGAGGTGGTTATGAAG
GTTGTTGACCTACCTGAGGAGGAATTGTTTCGAAGCATCGTCTCTTACAT
CTAAGATGTAACAAATTCCTGCAACCTTGGGAAGCATTTAAGCAGAGGCG
CCAGAATGCACGCATGCTCAgGGAAAGAGCATTGAGTAACCCATTGTGGA
GGCGTCGGTCCTGGCTCGTGGTCATCCGAGCGCGACGAACAAGGTACCTT
CGGACCAGAGGGGGGCGATGTTCGAAGTGGTTTGTGTTTAGACGCAAAGG
TGCACGTGACATGTGCTCACTGCCCCTAACTGTAACTGAGACTAACATGG
TGATCAGCAGCTGGCCGAGCGGAGCGGATGATAGCTTTCGGGAGGTGGTT
ATGAAGGTTGTTGACCTACCTGAGGAGGAATTGTTTCGAAGCATCGTCTC
TTACATCTAA
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