mRNA_F-serratus_M_contig1251.1903.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1251.1903.1
Unique NamemRNA_F-serratus_M_contig1251.1903.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1251.1903.1 vs. uniprot
Match: Q2PQH2_FUCVE (Multifunctional fusion protein n=3 Tax=Fucaceae TaxID=3010 RepID=Q2PQH2_FUCVE)

HSP 1 Score: 254 bits (650), Expect = 1.710e-84
Identity = 132/134 (98.51%), Postives = 133/134 (99.25%), Query Frame = 1
Query:   25 IHTGGKIGVLVEVNCETDFVARREEFQELVKNIAMQIAASPEVLYVKTDDIPEETFFAEKEIELKKNDLINKSNDIKDQIILGRVQKTLKRLSLIDQQFIRDPNITVEELIKEKISLFGENIKIKRFTRYILGS 426
            IHTGGKIGVLVEVNCETDFVARREEFQELVKNIAMQIAASPEVLYVKTDDIPEETFFAEKEIELKKNDLINK NDI+DQIILGRVQKTLKRLSLIDQQFIRDPNITVEELIKEKISLFGENIKIKRFTRYILGS
Sbjct:   67 IHTGGKIGVLVEVNCETDFVARREEFQELVKNIAMQIAASPEVLYVKTDDIPEETFFAEKEIELKKNDLINKPNDIEDQIILGRVQKTLKRLSLIDQQFIRDPNITVEELIKEKISLFGENIKIKRFTRYILGS 200          
BLAST of mRNA_F-serratus_M_contig1251.1903.1 vs. uniprot
Match: A0A109QR64_9PHAE (Elongation factor Ts, mitochondrial n=14 Tax=Sargassaceae TaxID=3014 RepID=A0A109QR64_9PHAE)

HSP 1 Score: 225 bits (574), Expect = 6.330e-73
Identity = 114/134 (85.07%), Postives = 126/134 (94.03%), Query Frame = 1
Query:   25 IHTGGKIGVLVEVNCETDFVARREEFQELVKNIAMQIAASPEVLYVKTDDIPEETFFAEKEIELKKNDLINKSNDIKDQIILGRVQKTLKRLSLIDQQFIRDPNITVEELIKEKISLFGENIKIKRFTRYILGS 426
            IHTGGKIGVLVEVNCETDFVARREEFQELVKNIAMQIAASPEVLY+K DD+P+E F +EKE+EL KNDL NK  +IK++IILGRV+KTLK+LSLIDQ FIRDPNITVEEL+KEKISLFGENIKIKRFTRYILG+
Sbjct:   67 IHTGGKIGVLVEVNCETDFVARREEFQELVKNIAMQIAASPEVLYIKMDDVPKEIFQSEKEMELNKNDLDNKPEEIKNKIILGRVEKTLKKLSLIDQPFIRDPNITVEELVKEKISLFGENIKIKRFTRYILGT 200          
BLAST of mRNA_F-serratus_M_contig1251.1903.1 vs. uniprot
Match: A0A0S0FB63_COSCS (Multifunctional fusion protein n=26 Tax=Laminariales TaxID=2886 RepID=A0A0S0FB63_COSCS)

HSP 1 Score: 215 bits (547), Expect = 8.100e-69
Identity = 108/134 (80.60%), Postives = 123/134 (91.79%), Query Frame = 1
Query:   25 IHTGGKIGVLVEVNCETDFVARREEFQELVKNIAMQIAASPEVLYVKTDDIPEETFFAEKEIELKKNDLINKSNDIKDQIILGRVQKTLKRLSLIDQQFIRDPNITVEELIKEKISLFGENIKIKRFTRYILGS 426
            IH GGKIGVLVEVNCETDFVARREEFQELV+NIAMQIAASP+VLYV T+DIP+E F AEKEIE +K DLINK ++IK++IILGR++KTLK LSL+DQ FIRD NIT++ELIKEKI+LFGENIKIKRFTRY LGS
Sbjct:   67 IHAGGKIGVLVEVNCETDFVARREEFQELVQNIAMQIAASPDVLYVNTNDIPQELFLAEKEIESEKQDLINKPDEIKEKIILGRIEKTLKNLSLLDQAFIRDSNITIDELIKEKITLFGENIKIKRFTRYTLGS 200          
BLAST of mRNA_F-serratus_M_contig1251.1903.1 vs. uniprot
Match: A0A8F0FAZ7_9PHAE (Elongation factor Ts, mitochondrial n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAZ7_9PHAE)

HSP 1 Score: 213 bits (541), Expect = 6.620e-68
Identity = 106/134 (79.10%), Postives = 122/134 (91.04%), Query Frame = 1
Query:   25 IHTGGKIGVLVEVNCETDFVARREEFQELVKNIAMQIAASPEVLYVKTDDIPEETFFAEKEIELKKNDLINKSNDIKDQIILGRVQKTLKRLSLIDQQFIRDPNITVEELIKEKISLFGENIKIKRFTRYILGS 426
            IHTGGKIGVLVEVNCETDFVARREEFQEL +NIAMQIAASP++ YV  D+IPEE F  EKEIELKK+DL NK ++IK++IILGRV+KTLK LSL+DQ FIR+PNIT++EL+KEKISLFGENIKIKRFTRY LG+
Sbjct:   67 IHTGGKIGVLVEVNCETDFVARREEFQELAQNIAMQIAASPDIRYVNMDEIPEEIFLTEKEIELKKDDLNNKPDNIKEKIILGRVEKTLKTLSLLDQSFIRNPNITIDELVKEKISLFGENIKIKRFTRYTLGN 200          
BLAST of mRNA_F-serratus_M_contig1251.1903.1 vs. uniprot
Match: A0A8F0JZ93_9PHAE (Elongation factor Ts, mitochondrial n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0JZ93_9PHAE)

HSP 1 Score: 210 bits (535), Expect = 5.590e-67
Identity = 106/134 (79.10%), Postives = 122/134 (91.04%), Query Frame = 1
Query:   25 IHTGGKIGVLVEVNCETDFVARREEFQELVKNIAMQIAASPEVLYVKTDDIPEETFFAEKEIELKKNDLINKSNDIKDQIILGRVQKTLKRLSLIDQQFIRDPNITVEELIKEKISLFGENIKIKRFTRYILGS 426
            IH GGKIGVLVEVNCETDFVARREEFQELV+NIAMQIAASPEVLYV +++IPE+ F AEK IE +K+DL NK  +IK++IILGRV+KTLK+LSLIDQ FIRD NIT++ELIKEKISLFGENIK+KRFTRY LG+
Sbjct:   67 IHAGGKIGVLVEVNCETDFVARREEFQELVQNIAMQIAASPEVLYVNSEEIPEQVFLAEKAIEAEKDDLSNKPPEIKEKIILGRVEKTLKKLSLIDQAFIRDANITIDELIKEKISLFGENIKVKRFTRYTLGN 200          
BLAST of mRNA_F-serratus_M_contig1251.1903.1 vs. uniprot
Match: A0A8F0JXQ3_9PHAE (Elongation factor Ts, mitochondrial n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0JXQ3_9PHAE)

HSP 1 Score: 205 bits (521), Expect = 7.270e-65
Identity = 104/134 (77.61%), Postives = 120/134 (89.55%), Query Frame = 1
Query:   25 IHTGGKIGVLVEVNCETDFVARREEFQELVKNIAMQIAASPEVLYVKTDDIPEETFFAEKEIELKKNDLINKSNDIKDQIILGRVQKTLKRLSLIDQQFIRDPNITVEELIKEKISLFGENIKIKRFTRYILGS 426
            IHTG KIGVL+EVNCETDFVARREEF EL  NIAMQIAASPEV+YV  DDIP+E F AE+EIELKK DL NK N+IK++I+LGRV+KTLK LSL++QQFIR+P+ITVEELIKEKI+LFGENI+IKRF RY LG+
Sbjct:   67 IHTGAKIGVLLEVNCETDFVARREEFHELANNIAMQIAASPEVIYVNFDDIPKEYFKAEREIELKKEDLFNKPNEIKEKIMLGRVEKTLKTLSLLNQQFIRNPSITVEELIKEKIALFGENIRIKRFIRYNLGN 200          
BLAST of mRNA_F-serratus_M_contig1251.1903.1 vs. uniprot
Match: A0A8F0JY19_9PHAE (Elongation factor Ts, mitochondrial n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0JY19_9PHAE)

HSP 1 Score: 204 bits (520), Expect = 1.030e-64
Identity = 103/133 (77.44%), Postives = 119/133 (89.47%), Query Frame = 1
Query:   25 IHTGGKIGVLVEVNCETDFVARREEFQELVKNIAMQIAASPEVLYVKTDDIPEETFFAEKEIELKKNDLINKSNDIKDQIILGRVQKTLKRLSLIDQQFIRDPNITVEELIKEKISLFGENIKIKRFTRYILG 423
            IH GGKIGVLVEVNCETDFVARREEFQELV+NIAMQIAASP+VLYV  DD+P+E F AEKE+E  K+DL NK  ++K++IILGRV+KTLK LSL++Q FIR+ NITV+ELIKEKISLFGENI+IKRFTRY LG
Sbjct:   67 IHAGGKIGVLVEVNCETDFVARREEFQELVQNIAMQIAASPDVLYVNIDDVPKELFLAEKEVESGKDDLSNKPEEMKEKIILGRVEKTLKNLSLLNQSFIRNQNITVDELIKEKISLFGENIRIKRFTRYTLG 199          
BLAST of mRNA_F-serratus_M_contig1251.1903.1 vs. uniprot
Match: A0A6B7EV40_9PHAE (Elongation factor Ts, mitochondrial n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EV40_9PHAE)

HSP 1 Score: 203 bits (517), Expect = 2.860e-64
Identity = 100/134 (74.63%), Postives = 122/134 (91.04%), Query Frame = 1
Query:   25 IHTGGKIGVLVEVNCETDFVARREEFQELVKNIAMQIAASPEVLYVKTDDIPEETFFAEKEIELKKNDLINKSNDIKDQIILGRVQKTLKRLSLIDQQFIRDPNITVEELIKEKISLFGENIKIKRFTRYILGS 426
            IH GG+IGVL+EVNCETDFVARREEFQELV++IAMQ+AA P+VLY+K+++IPE+ F AEKEIE  K+DL NK +DIK++IILGRV+KTLK L+L+DQ FI+D NITV+ELIKEKISLFGENI+IKRFTRY LG+
Sbjct:   66 IHIGGRIGVLIEVNCETDFVARREEFQELVQDIAMQVAACPDVLYIKSEEIPEDVFLAEKEIESGKDDLNNKPDDIKEKIILGRVEKTLKNLTLLDQPFIKDTNITVDELIKEKISLFGENIRIKRFTRYTLGN 199          
BLAST of mRNA_F-serratus_M_contig1251.1903.1 vs. uniprot
Match: D1J791_ECTSI (Multifunctional fusion protein n=5 Tax=Ectocarpales TaxID=2877 RepID=D1J791_ECTSI)

HSP 1 Score: 201 bits (511), Expect = 2.330e-63
Identity = 101/134 (75.37%), Postives = 121/134 (90.30%), Query Frame = 1
Query:   25 IHTGGKIGVLVEVNCETDFVARREEFQELVKNIAMQIAASPEVLYVKTDDIPEETFFAEKEIELKKNDLINKSNDIKDQIILGRVQKTLKRLSLIDQQFIRDPNITVEELIKEKISLFGENIKIKRFTRYILGS 426
            IH GGKIGVL+EVNCETDFVARREEFQELV+NIAMQIAASP+VLY+++ DIPEE F  EK+IE +K DLINK ++IK++IILGRV+KTLK L+L++Q  IRD +ITV+ELIKEKISLFGENI+IKRFTRY LG+
Sbjct:   66 IHIGGKIGVLIEVNCETDFVARREEFQELVQNIAMQIAASPDVLYIQSSDIPEEIFLNEKKIESEKEDLINKPDEIKEKIILGRVEKTLKNLTLLNQPCIRDASITVDELIKEKISLFGENIRIKRFTRYTLGN 199          
BLAST of mRNA_F-serratus_M_contig1251.1903.1 vs. uniprot
Match: A0A7T8JK51_SCYLO (Multifunctional fusion protein n=2 Tax=Scytosiphon TaxID=27966 RepID=A0A7T8JK51_SCYLO)

HSP 1 Score: 197 bits (500), Expect = 1.100e-61
Identity = 98/134 (73.13%), Postives = 117/134 (87.31%), Query Frame = 1
Query:   25 IHTGGKIGVLVEVNCETDFVARREEFQELVKNIAMQIAASPEVLYVKTDDIPEETFFAEKEIELKKNDLINKSNDIKDQIILGRVQKTLKRLSLIDQQFIRDPNITVEELIKEKISLFGENIKIKRFTRYILGS 426
            IH GG+IGVL+EVNCETDFVARREEFQELV+N+AMQIAASP+VLY++ DDIPE+    EK IE  K DL NK +DI+++IILGR+ KTLK L+L++Q FIRD NITV+ELIKEKISLFGENI+IKRFTRY LG+
Sbjct:   66 IHIGGRIGVLIEVNCETDFVARREEFQELVQNLAMQIAASPDVLYIQNDDIPEDIISNEKAIESGKEDLSNKPDDIREKIILGRIDKTLKNLTLLNQPFIRDANITVDELIKEKISLFGENIRIKRFTRYTLGN 199          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1251.1903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q2PQH2_FUCVE1.710e-8498.51Multifunctional fusion protein n=3 Tax=Fucaceae Ta... [more]
A0A109QR64_9PHAE6.330e-7385.07Elongation factor Ts, mitochondrial n=14 Tax=Sarga... [more]
A0A0S0FB63_COSCS8.100e-6980.60Multifunctional fusion protein n=26 Tax=Laminarial... [more]
A0A8F0FAZ7_9PHAE6.620e-6879.10Elongation factor Ts, mitochondrial n=1 Tax=Desmar... [more]
A0A8F0JZ93_9PHAE5.590e-6779.10Elongation factor Ts, mitochondrial n=1 Tax=Chorda... [more]
A0A8F0JXQ3_9PHAE7.270e-6577.61Elongation factor Ts, mitochondrial n=1 Tax=Protoh... [more]
A0A8F0JY19_9PHAE1.030e-6477.44Elongation factor Ts, mitochondrial n=2 Tax=Lamina... [more]
A0A6B7EV40_9PHAE2.860e-6474.63Elongation factor Ts, mitochondrial n=1 Tax=Clados... [more]
D1J791_ECTSI2.330e-6375.37Multifunctional fusion protein n=5 Tax=Ectocarpale... [more]
A0A7T8JK51_SCYLO1.100e-6173.13Multifunctional fusion protein n=2 Tax=Scytosiphon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1251contigF-serratus_M_contig1251:121377..121805 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score203.4
Seed ortholog evalue7.2e-50
Seed eggNOG ortholog2880.D1J791
Preferred nameEFTS
KEGG koko:K02357
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.translation elongation factor activity
EggNOG OGsCOG0264@1,KOG1071@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012,ko03029
Exons1
Model size429
Cds size429
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929178.6488736-CDS-F-serratus_M_contig1251:121376..1218051622929178.6488736-CDS-F-serratus_M_contig1251:121376..121805Fucus serratus maleCDSF-serratus_M_contig1251 121377..121805 +
1690962738.7887816-CDS-F-serratus_M_contig1251:121376..1218051690962738.7887816-CDS-F-serratus_M_contig1251:121376..121805Fucus serratus maleCDSF-serratus_M_contig1251 121377..121805 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1251.1903.1prot_F-serratus_M_contig1251.1903.1Fucus serratus malepolypeptideF-serratus_M_contig1251 121377..121805 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1251.1903.1

>prot_F-serratus_M_contig1251.1903.1 ID=prot_F-serratus_M_contig1251.1903.1|Name=mRNA_F-serratus_M_contig1251.1903.1|organism=Fucus serratus male|type=polypeptide|length=143bp
MNEPPGARIHTGGKIGVLVEVNCETDFVARREEFQELVKNIAMQIAASPE
VLYVKTDDIPEETFFAEKEIELKKNDLINKSNDIKDQIILGRVQKTLKRL
SLIDQQFIRDPNITVEELIKEKISLFGENIKIKRFTRYILGS*
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mRNA from alignment at F-serratus_M_contig1251:121377..121805+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1251.1903.1 ID=mRNA_F-serratus_M_contig1251.1903.1|Name=mRNA_F-serratus_M_contig1251.1903.1|organism=Fucus serratus male|type=mRNA|length=429bp|location=Sequence derived from alignment at F-serratus_M_contig1251:121377..121805+ (Fucus serratus male)
ATGAATGAGCCTCCTGGAGCGCGTATTCATACAGGTGGGAAAATTGGTGT TTTAGTAGAAGTAAATTGTGAAACTGATTTTGTGGCACGTCGAGAAGAAT TTCAAGAGTTAGTTAAAAATATTGCAATGCAAATTGCTGCTTCCCCTGAA GTTCTTTATGTTAAAACTGATGATATTCCAGAAGAAACTTTTTTTGCCGA GAAAGAAATTGAATTAAAAAAAAATGATTTAATTAATAAATCTAATGATA TTAAAGATCAAATTATTTTAGGAAGGGTTCAAAAAACTTTAAAACGATTA AGTTTGATAGACCAACAATTTATTAGAGACCCTAATATTACAGTTGAAGA ATTAATAAAAGAAAAAATTTCTCTTTTTGGTGAAAATATAAAAATTAAAA GATTTACTCGTTATATATTAGGTTCATAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1251:121377..121805+

>mRNA_F-serratus_M_contig1251.1903.1 ID=mRNA_F-serratus_M_contig1251.1903.1|Name=mRNA_F-serratus_M_contig1251.1903.1|organism=Fucus serratus male|type=CDS|length=858bp|location=Sequence derived from alignment at F-serratus_M_contig1251:121377..121805+ (Fucus serratus male)
ATGAATGAGCCTCCTGGAGCGCGTATTCATACAGGTGGGAAAATTGGTGT
TTTAGTAGAAGTAAATTGTGAAACTGATTTTGTGGCACGTCGAGAAGAAT
TTCAAGAGTTAGTTAAAAATATTGCAATGCAAATTGCTGCTTCCCCTGAA
GTTCTTTATGTTAAAACTGATGATATTCCAGAAGAAACTTTTTTTGCCGA
GAAAGAAATTGAATTAAAAAAAAATGATTTAATTAATAAATCTAATGATA
TTAAAGATCAAATTATTTTAGGAAGGGTTCAAAAAACTTTAAAACGATTA
AGTTTGATAGACCAACAATTTATTAGAGACCCTAATATTACAGTTGAAGA
ATTAATAAAAGAAAAAATTTCTCTTTTTGGTGAAAATATAAAAATTAAAA
GATTTACTCGTTATATATTAGGTTCATAAATGAATGAGCCTCCTGGAGCG
CGTATTCATACAGGTGGGAAAATTGGTGTTTTAGTAGAAGTAAATTGTGA
AACTGATTTTGTGGCACGTCGAGAAGAATTTCAAGAGTTAGTTAAAAATA
TTGCAATGCAAATTGCTGCTTCCCCTGAAGTTCTTTATGTTAAAACTGAT
GATATTCCAGAAGAAACTTTTTTTGCCGAGAAAGAAATTGAATTAAAAAA
AAATGATTTAATTAATAAATCTAATGATATTAAAGATCAAATTATTTTAG
GAAGGGTTCAAAAAACTTTAAAACGATTAAGTTTGATAGACCAACAATTT
ATTAGAGACCCTAATATTACAGTTGAAGAATTAATAAAAGAAAAAATTTC
TCTTTTTGGTGAAAATATAAAAATTAAAAGATTTACTCGTTATATATTAG
GTTCATAA
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