mRNA_F-serratus_M_contig1251.1901.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1251.1901.1
Unique NamemRNA_F-serratus_M_contig1251.1901.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig1251.1901.1 vs. uniprot
Match: A0A2R4QQ35_9PHAE (50S ribosomal protein L21 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QQ35_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 4.680e-23
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 2 
Query:   35 MEYAIIEASGRQFWVEPKKFIEFNRLPLKVGSTIIIKRVLFVKKK 169
            MEYAIIEASGRQFWVEPKKFIEFNRLPLKVGSTIIIKRVLFVKKK
Sbjct:    1 MEYAIIEASGRQFWVEPKKFIEFNRLPLKVGSTIIIKRVLFVKKK 45
[Close]
BLAST of mRNA_F-serratus_M_contig1251.1901.1 vs. uniprot
Match: A0A0R6M4T4_UNDPI (50S ribosomal protein L21, chloroplastic n=25 Tax=Phaeophyceae TaxID=2870 RepID=A0A0R6M4T4_UNDPI)

HSP 1 Score: 87.8 bits (216), Expect = 1.640e-20
Identity = 41/52 (78.85%), Postives = 47/52 (90.38%), Query Frame = 2 
Query:   35 MEYAIIEASGRQFWVEPKKFIEFNRLPLKVGSTIIIKRVLFVKKKQIFLLDN 190
            MEYAIIEASGRQFWVEPKKFIEFNRL LK+GSTI+I+RVLFVK+K+  L+  
Sbjct:    1 MEYAIIEASGRQFWVEPKKFIEFNRLILKIGSTILIRRVLFVKQKKNTLIGQ 52
[Close]
BLAST of mRNA_F-serratus_M_contig1251.1901.1 vs. uniprot
Match: A0A141BSP2_9PHAE (50S ribosomal protein L21, chloroplastic n=14 Tax=Sargassum TaxID=3015 RepID=A0A141BSP2_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 2.460e-20
Identity = 39/45 (86.67%), Postives = 43/45 (95.56%), Query Frame = 2 
Query:   35 MEYAIIEASGRQFWVEPKKFIEFNRLPLKVGSTIIIKRVLFVKKK 169
            MEYAIIEASGRQFWVEP KFIE NRLPL++GSTI+IKR+LFVKKK
Sbjct:    1 MEYAIIEASGRQFWVEPNKFIELNRLPLRIGSTILIKRILFVKKK 45
[Close]
BLAST of mRNA_F-serratus_M_contig1251.1901.1 vs. uniprot
Match: A0A8F0JZ48_9PHAE (Ribosomal protein L21 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0JZ48_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 4.680e-20
Identity = 40/52 (76.92%), Postives = 46/52 (88.46%), Query Frame = 2 
Query:   35 MEYAIIEASGRQFWVEPKKFIEFNRLPLKVGSTIIIKRVLFVKKKQIFLLDN 190
            MEYAIIEASGRQFWVEPKKFIEFNRL LK+GST++I+RVLFVKK+   L+  
Sbjct:    1 MEYAIIEASGRQFWVEPKKFIEFNRLILKIGSTVLIRRVLFVKKEANTLIGR 52
[Close]
BLAST of mRNA_F-serratus_M_contig1251.1901.1 vs. uniprot
Match: A0A1L2F1Q6_9PHAE (Ribosomal protein L21 n=1 Tax=Coccophora langsdorfii TaxID=74099 RepID=A0A1L2F1Q6_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 2.000e-19
Identity = 38/45 (84.44%), Postives = 42/45 (93.33%), Query Frame = 2 
Query:   35 MEYAIIEASGRQFWVEPKKFIEFNRLPLKVGSTIIIKRVLFVKKK 169
            MEYAIIEASGRQFWVEP KFIE NRLPL++GS I+IKR+LFVKKK
Sbjct:    1 MEYAIIEASGRQFWVEPNKFIELNRLPLRIGSIILIKRILFVKKK 45
[Close]
BLAST of mRNA_F-serratus_M_contig1251.1901.1 vs. uniprot
Match: A0A1I9LVJ3_9PHAE (50S ribosomal protein L21, chloroplastic n=10 Tax=Ectocarpales TaxID=2877 RepID=A0A1I9LVJ3_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 3.800e-19
Identity = 38/45 (84.44%), Postives = 42/45 (93.33%), Query Frame = 2 
Query:   35 MEYAIIEASGRQFWVEPKKFIEFNRLPLKVGSTIIIKRVLFVKKK 169
            MEYAIIEASGRQFWVEPKKFIEFNRL LK+GSTI+I+R+LF K K
Sbjct:    1 MEYAIIEASGRQFWVEPKKFIEFNRLILKIGSTILIRRILFAKNK 45
[Close]
BLAST of mRNA_F-serratus_M_contig1251.1901.1 vs. uniprot
Match: A0A2I4Q2A5_9PHAE (50S ribosomal protein L21, chloroplastic n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2A5_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 9.680e-19
Identity = 37/44 (84.09%), Postives = 42/44 (95.45%), Query Frame = 2 
Query:   35 MEYAIIEASGRQFWVEPKKFIEFNRLPLKVGSTIIIKRVLFVKK 166
            MEYAIIEASGRQFW+EPKKF+EFNRL L +GSTII+KR+LFVKK
Sbjct:    1 MEYAIIEASGRQFWIEPKKFVEFNRLLLHIGSTIILKRILFVKK 44
[Close]
BLAST of mRNA_F-serratus_M_contig1251.1901.1 vs. uniprot
Match: A0A8F0F7S8_9PHAE (Ribosomal protein L21 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F7S8_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 2.510e-17
Identity = 36/45 (80.00%), Postives = 41/45 (91.11%), Query Frame = 2 
Query:   35 MEYAIIEASGRQFWVEPKKFIEFNRLPLKVGSTIIIKRVLFVKKK 169
            MEYAIIEASGRQFWVEPKKFIEFN L +K+GSTI+I+RVLF K +
Sbjct:    1 MEYAIIEASGRQFWVEPKKFIEFNXLIIKIGSTILIRRVLFFKNE 45
[Close]
BLAST of mRNA_F-serratus_M_contig1251.1901.1 vs. uniprot
Match: A0A8F0JYD6_9PHAE (Ribosomal protein L21 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0JYD6_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.010e-16
Identity = 33/44 (75.00%), Postives = 41/44 (93.18%), Query Frame = 2 
Query:   35 MEYAIIEASGRQFWVEPKKFIEFNRLPLKVGSTIIIKRVLFVKK 166
            MEYA+IEASGRQFWVEPKKFIEFNRL + +GST+I++R+LF+ K
Sbjct:    1 MEYAVIEASGRQFWVEPKKFIEFNRLLINIGSTLIMQRILFMNK 44
[Close]
BLAST of mRNA_F-serratus_M_contig1251.1901.1 vs. uniprot
Match: A0A8E5BG87_9PHAE (Ribosomal protein L21 n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E5BG87_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 2.030e-16
Identity = 35/52 (67.31%), Postives = 41/52 (78.85%), Query Frame = 2 
Query:   35 MEYAIIEASGRQFWVEPKKFIEFNRLPLKVGSTIIIKRVLFVKKKQIFLLDN 190
            M+YAI+EASGRQFWVEP KF E NRL  KVGST+I KRVLF+ KK + L+  
Sbjct:    1 MKYAILEASGRQFWVEPTKFFELNRLSRKVGSTLIFKRVLFLNKKGVCLIGQ 52
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1251.1901.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2R4QQ35_9PHAE4.680e-23100.0050S ribosomal protein L21 n=3 Tax=Fucaceae TaxID=3... [more]
A0A0R6M4T4_UNDPI1.640e-2078.8550S ribosomal protein L21, chloroplastic n=25 Tax=... [more]
A0A141BSP2_9PHAE2.460e-2086.6750S ribosomal protein L21, chloroplastic n=14 Tax=... [more]
A0A8F0JZ48_9PHAE4.680e-2076.92Ribosomal protein L21 n=1 Tax=Chorda asiatica TaxI... [more]
A0A1L2F1Q6_9PHAE2.000e-1984.44Ribosomal protein L21 n=1 Tax=Coccophora langsdorf... [more]
A0A1I9LVJ3_9PHAE3.800e-1984.4450S ribosomal protein L21, chloroplastic n=10 Tax=... [more]
A0A2I4Q2A5_9PHAE9.680e-1984.0950S ribosomal protein L21, chloroplastic n=1 Tax=D... [more]
A0A8F0F7S8_9PHAE2.510e-1780.00Ribosomal protein L21 n=2 Tax=Laminariales TaxID=2... [more]
A0A8F0JYD6_9PHAE1.010e-1675.00Ribosomal protein L21 n=1 Tax=Protohalopteris sp. ... [more]
A0A8E5BG87_9PHAE2.030e-1667.31Ribosomal protein L21 n=1 Tax=Phaeophyceae sp. Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1251contigF-serratus_M_contig1251:118351..118656 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.3
Seed ortholog evalue1.9e-14
Seed eggNOG ortholog2880.D1J6Z3
Preferred namerpl21
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.rRNA binding
EggNOG OGs2S7IP@2759,COG0261@1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size306
Cds size165
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1251.1901.1prot_F-serratus_M_contig1251.1901.1Fucus serratus malepolypeptideF-serratus_M_contig1251 118385..118549 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929178.4616525-UTR-F-serratus_M_contig1251:118350..1183841622929178.4616525-UTR-F-serratus_M_contig1251:118350..118384Fucus serratus maleUTRF-serratus_M_contig1251 118351..118384 +
1690962738.7217286-UTR-F-serratus_M_contig1251:118350..1183841690962738.7217286-UTR-F-serratus_M_contig1251:118350..118384Fucus serratus maleUTRF-serratus_M_contig1251 118351..118384 +
1622929178.5270638-UTR-F-serratus_M_contig1251:118549..1186561622929178.5270638-UTR-F-serratus_M_contig1251:118549..118656Fucus serratus maleUTRF-serratus_M_contig1251 118550..118656 +
1690962738.7506557-UTR-F-serratus_M_contig1251:118549..1186561690962738.7506557-UTR-F-serratus_M_contig1251:118549..118656Fucus serratus maleUTRF-serratus_M_contig1251 118550..118656 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929178.4758832-CDS-F-serratus_M_contig1251:118384..1185491622929178.4758832-CDS-F-serratus_M_contig1251:118384..118549Fucus serratus maleCDSF-serratus_M_contig1251 118385..118549 +
1690962738.7368789-CDS-F-serratus_M_contig1251:118384..1185491690962738.7368789-CDS-F-serratus_M_contig1251:118384..118549Fucus serratus maleCDSF-serratus_M_contig1251 118385..118549 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1251.1901.1

>prot_F-serratus_M_contig1251.1901.1 ID=prot_F-serratus_M_contig1251.1901.1|Name=mRNA_F-serratus_M_contig1251.1901.1|organism=Fucus serratus male|type=polypeptide|length=55bp
MEYAIIEASGRQFWVEPKKFIEFNRLPLKVGSTIIIKRVLFVKKKQIFLL
DNHI*
back to top

mRNA from alignment at F-serratus_M_contig1251:118351..118656+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1251.1901.1 ID=mRNA_F-serratus_M_contig1251.1901.1|Name=mRNA_F-serratus_M_contig1251.1901.1|organism=Fucus serratus male|type=mRNA|length=306bp|location=Sequence derived from alignment at F-serratus_M_contig1251:118351..118656+ (Fucus serratus male)
AGAAACTATTACTTGGTTTTAGAATTTCTATTTAATGGAATATGCCATTA
TAGAAGCTAGTGGTCGACAGTTTTGGGTAGAGCCTAAGAAATTTATAGAA
TTTAATCGTTTACCTTTGAAAGTTGGTAGTACTATTATTATTAAAAGAGT
TCTATTTGTAAAAAAAAAGCAGATATTTTTATTAGACAACCATATTTAAA
GAATATTTTATTAACAGGAATAATTAGTAAGCATTTTTTAGGTCCTAAAG
TTCTGGTTTTTAAAATATCGCAAAAAAAAAATATCGCAAAAAAATAGGTC
ATAGAC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1251:118351..118656+

>mRNA_F-serratus_M_contig1251.1901.1 ID=mRNA_F-serratus_M_contig1251.1901.1|Name=mRNA_F-serratus_M_contig1251.1901.1|organism=Fucus serratus male|type=CDS|length=330bp|location=Sequence derived from alignment at F-serratus_M_contig1251:118351..118656+ (Fucus serratus male)
ATGGAATATGCCATTATAGAAGCTAGTGGTCGACAGTTTTGGGTAGAGCC
TAAGAAATTTATAGAATTTAATCGTTTACCTTTGAAAGTTGGTAGTACTA
TTATTATTAAAAGAGTTCTATTTGTAAAAAAAAAGCAGATATTTTTATTA
GACAACCATATTTAAATGGAATATGCCATTATAGAAGCTAGTGGTCGACA
GTTTTGGGTAGAGCCTAAGAAATTTATAGAATTTAATCGTTTACCTTTGA
AAGTTGGTAGTACTATTATTATTAAAAGAGTTCTATTTGTAAAAAAAAAG
CAGATATTTTTATTAGACAACCATATTTAA
back to top