mRNA_F-serratus_M_contig1251.1899.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1251.1899.1
Unique NamemRNA_F-serratus_M_contig1251.1899.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1251.1899.1 vs. uniprot
Match: A0A061S5B2_9CHLO (Cell wall-associated hydrolase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S5B2_9CHLO)

HSP 1 Score: 66.2 bits (160), Expect = 2.660e-13
Identity = 28/33 (84.85%), Postives = 30/33 (90.91%), Query Frame = 1 
Query:    4 TFRHWAGVSPHTLFYNLAETCVFGKQSLGPCYC 102
            TFRHWAGVSPHTL Y+LAETCVFGKQS GP +C
Sbjct:   59 TFRHWAGVSPHTLSYDLAETCVFGKQSPGPGHC 91
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BLAST of mRNA_F-serratus_M_contig1251.1899.1 vs. uniprot
Match: A0A7R9RWX0_9CRUS (Hypothetical protein (Fragment) n=1 Tax=Argulus foliaceus TaxID=509924 RepID=A0A7R9RWX0_9CRUS)

HSP 1 Score: 65.5 bits (158), Expect = 4.500e-13
Identity = 28/34 (82.35%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:    1 LTFRHWAGVSPHTLFYNLAETCVFGKQSLGPCYC 102
            LTFRHWAGVSPHT  Y LAETCVFGKQSLG  +C
Sbjct:    4 LTFRHWAGVSPHTSSYELAETCVFGKQSLGSLHC 37
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BLAST of mRNA_F-serratus_M_contig1251.1899.1 vs. uniprot
Match: S8DAJ4_9LAMI (Uncharacterized protein (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8DAJ4_9LAMI)

HSP 1 Score: 63.9 bits (154), Expect = 2.710e-12
Identity = 27/34 (79.41%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:    1 LTFRHWAGVSPHTLFYNLAETCVFGKQSLGPCYC 102
            LTFRHWAGVSPHT  Y+ AETCVFGKQS GP +C
Sbjct:   22 LTFRHWAGVSPHTWSYDFAETCVFGKQSPGPGHC 55
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BLAST of mRNA_F-serratus_M_contig1251.1899.1 vs. uniprot
Match: A0A540LJL7_MALBA (Uncharacterized protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540LJL7_MALBA)

HSP 1 Score: 63.9 bits (154), Expect = 1.040e-11
Identity = 27/34 (79.41%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:    1 LTFRHWAGVSPHTLFYNLAETCVFGKQSLGPCYC 102
            LTFRHWAGVSPHT  Y+ AETCVFGKQS GP +C
Sbjct:   30 LTFRHWAGVSPHTWSYDFAETCVFGKQSPGPGHC 63
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BLAST of mRNA_F-serratus_M_contig1251.1899.1 vs. uniprot
Match: A0A6P5NU31_ARADU (uncharacterized protein LOC110281477 n=1 Tax=Arachis duranensis TaxID=130453 RepID=A0A6P5NU31_ARADU)

HSP 1 Score: 63.9 bits (154), Expect = 1.780e-11
Identity = 27/34 (79.41%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:    1 LTFRHWAGVSPHTLFYNLAETCVFGKQSLGPCYC 102
            LTFRHWAGVSPHT  Y+ AETCVFGKQS GP +C
Sbjct:   62 LTFRHWAGVSPHTWSYDFAETCVFGKQSPGPGHC 95
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BLAST of mRNA_F-serratus_M_contig1251.1899.1 vs. uniprot
Match: A0A2U1LZL2_ARTAN (Myb-like domain-containing protein n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1LZL2_ARTAN)

HSP 1 Score: 63.9 bits (154), Expect = 1.830e-11
Identity = 27/34 (79.41%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:    1 LTFRHWAGVSPHTLFYNLAETCVFGKQSLGPCYC 102
            LTFRHWAGVSPHT  Y+ AETCVFGKQS GP +C
Sbjct:  128 LTFRHWAGVSPHTWSYDFAETCVFGKQSPGPGHC 161
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BLAST of mRNA_F-serratus_M_contig1251.1899.1 vs. uniprot
Match: A0A166GEI3_DAUCS (Uncharacterized protein n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A166GEI3_DAUCS)

HSP 1 Score: 63.9 bits (154), Expect = 5.690e-11
Identity = 27/34 (79.41%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:    1 LTFRHWAGVSPHTLFYNLAETCVFGKQSLGPCYC 102
            LTFRHWAGVSPHT  Y+ AETCVFGKQS GP +C
Sbjct:  204 LTFRHWAGVSPHTWSYDFAETCVFGKQSPGPGHC 237
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BLAST of mRNA_F-serratus_M_contig1251.1899.1 vs. uniprot
Match: A0A8J5CHN5_ZINOF (Uncharacterized protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5CHN5_ZINOF)

HSP 1 Score: 63.9 bits (154), Expect = 6.230e-11
Identity = 27/34 (79.41%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:    1 LTFRHWAGVSPHTLFYNLAETCVFGKQSLGPCYC 102
            LTFRHWAGVSPHT  Y+ AETCVFGKQS GP +C
Sbjct:  265 LTFRHWAGVSPHTWSYDFAETCVFGKQSPGPGHC 298
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BLAST of mRNA_F-serratus_M_contig1251.1899.1 vs. uniprot
Match: A0A8J5FAK3_ZINOF (Uncharacterized protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5FAK3_ZINOF)

HSP 1 Score: 63.9 bits (154), Expect = 6.360e-11
Identity = 27/34 (79.41%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:    1 LTFRHWAGVSPHTLFYNLAETCVFGKQSLGPCYC 102
            LTFRHWAGVSPHT  Y+ AETCVFGKQS GP +C
Sbjct:   61 LTFRHWAGVSPHTWSYDFAETCVFGKQSPGPGHC 94
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BLAST of mRNA_F-serratus_M_contig1251.1899.1 vs. uniprot
Match: A0A0N9HU65_9BACT (Uncharacterized protein n=1 Tax=uncultured bacterium 5G12 TaxID=1701325 RepID=A0A0N9HU65_9BACT)

HSP 1 Score: 57.0 bits (136), Expect = 3.400e-10
Identity = 24/34 (70.59%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:    1 LTFRHWAGVSPHTLFYNLAETCVFGKQSLGPCYC 102
            +TFRH AGVSP+T  ++ AETCVFGKQSLGP +C
Sbjct:    1 MTFRHRAGVSPYTSSFDFAETCVFGKQSLGPFHC 34
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1251.1899.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A061S5B2_9CHLO2.660e-1384.85Cell wall-associated hydrolase n=1 Tax=Tetraselmis... [more]
A0A7R9RWX0_9CRUS4.500e-1382.35Hypothetical protein (Fragment) n=1 Tax=Argulus fo... [more]
S8DAJ4_9LAMI2.710e-1279.41Uncharacterized protein (Fragment) n=1 Tax=Genlise... [more]
A0A540LJL7_MALBA1.040e-1179.41Uncharacterized protein n=1 Tax=Malus baccata TaxI... [more]
A0A6P5NU31_ARADU1.780e-1179.41uncharacterized protein LOC110281477 n=1 Tax=Arach... [more]
A0A2U1LZL2_ARTAN1.830e-1179.41Myb-like domain-containing protein n=1 Tax=Artemis... [more]
A0A166GEI3_DAUCS5.690e-1179.41Uncharacterized protein n=1 Tax=Daucus carota subs... [more]
A0A8J5CHN5_ZINOF6.230e-1179.41Uncharacterized protein n=1 Tax=Zingiber officinal... [more]
A0A8J5FAK3_ZINOF6.360e-1179.41Uncharacterized protein n=1 Tax=Zingiber officinal... [more]
A0A0N9HU65_9BACT3.400e-1070.59Uncharacterized protein n=1 Tax=uncultured bacteri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1251contigF-serratus_M_contig1251:116990..117091 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size102
Cds size102
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929178.3458128-CDS-F-serratus_M_contig1251:116989..1170911622929178.3458128-CDS-F-serratus_M_contig1251:116989..117091Fucus serratus maleCDSF-serratus_M_contig1251 116990..117091 -
1690962738.67481-CDS-F-serratus_M_contig1251:116989..1170911690962738.67481-CDS-F-serratus_M_contig1251:116989..117091Fucus serratus maleCDSF-serratus_M_contig1251 116990..117091 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1251.1899.1prot_F-serratus_M_contig1251.1899.1Fucus serratus malepolypeptideF-serratus_M_contig1251 116990..117091 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1251.1899.1

>prot_F-serratus_M_contig1251.1899.1 ID=prot_F-serratus_M_contig1251.1899.1|Name=mRNA_F-serratus_M_contig1251.1899.1|organism=Fucus serratus male|type=polypeptide|length=34bp
LTFRHWAGVSPHTLFYNLAETCVFGKQSLGPCYC
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mRNA from alignment at F-serratus_M_contig1251:116990..117091-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1251.1899.1 ID=mRNA_F-serratus_M_contig1251.1899.1|Name=mRNA_F-serratus_M_contig1251.1899.1|organism=Fucus serratus male|type=mRNA|length=102bp|location=Sequence derived from alignment at F-serratus_M_contig1251:116990..117091- (Fucus serratus male)
TTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACGTTGTTTTACAA
CTTAGCGGAGACCTGTGTTTTTGGTAAACAGTCGCTTGGACCTTGTTATT
GC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1251:116990..117091-

>mRNA_F-serratus_M_contig1251.1899.1 ID=mRNA_F-serratus_M_contig1251.1899.1|Name=mRNA_F-serratus_M_contig1251.1899.1|organism=Fucus serratus male|type=CDS|length=204bp|location=Sequence derived from alignment at F-serratus_M_contig1251:116990..117091- (Fucus serratus male)
TTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACGTTGTTTTACAA
CTTAGCGGAGACCTGTGTTTTTGGTAAACAGTCGCTTGGACCTTGTTATT
GCTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACGTTGTTTTAC
AACTTAGCGGAGACCTGTGTTTTTGGTAAACAGTCGCTTGGACCTTGTTA
TTGC
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