mRNA_F-serratus_M_contig1251.1897.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1251.1897.1 vs. uniprot
Match: A0A2R4QPY5_9PHAE (Cytochrome c biogenesis protein CcsA n=4 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QPY5_9PHAE) HSP 1 Score: 432 bits (1110), Expect = 1.090e-150 Identity = 224/229 (97.82%), Postives = 227/229 (99.13%), Query Frame = 1
Query: 19 YGYFPLSNLYESLLFLSFILLFLYQFLEYKAQSPIFGGIVLPLVLLISGFSELTLPLEMQKASALVPALQSNWLMMHVSLMMLSYAILLIGSAFSIVYLVTSIVFLYNLESVEKRYFDYQEFMRGLINFTRGINLTREDYQTRSSIQSPSACCQIISLNNIFLEQEALAQSARTNFLSQLDKWSSRTISLGFPFLTIGIIAGAVWANEAWGSYWSWDPKETWALITCMV 705
YGYFPLSNLYESLLFLSFILLFLYQFLE KAQSPIFGGIVLPLVLLISGFSELTLPLEMQKASALVPALQSNWLMMHVSLMMLSYAILLIGSAFSIVYLVTSIVFLYNLESVEKRYFDYQEFMRGLINFTRG+NLTREDYQTRSSIQSPSACCQIISLNNIFLEQEALAQSARTNFLSQLDKWSSRTISLGFPFLTIGIIAGAVWANEAWGSYWSWDPKETWALIT ++
Sbjct: 63 YGYFPLSNLYESLLFLSFILLFLYQFLESKAQSPIFGGIVLPLVLLISGFSELTLPLEMQKASALVPALQSNWLMMHVSLMMLSYAILLIGSAFSIVYLVTSIVFLYNLESVEKRYFDYQEFMRGLINFTRGMNLTREDYQTRSSIQSPSACCQIISLNNIFLEQEALAQSARTNFLSQLDKWSSRTISLGFPFLTIGIIAGAVWANEAWGSYWSWDPKETWALITWLI 291
BLAST of mRNA_F-serratus_M_contig1251.1897.1 vs. uniprot
Match: A0A1L2F1W2_9PHAE (Cytochrome c biogenesis protein CcsA n=13 Tax=Sargassaceae TaxID=3014 RepID=A0A1L2F1W2_9PHAE) HSP 1 Score: 384 bits (986), Expect = 7.940e-132 Identity = 197/229 (86.03%), Postives = 211/229 (92.14%), Query Frame = 1
Query: 19 YGYFPLSNLYESLLFLSFILLFLYQFLEYKAQSPIFGGIVLPLVLLISGFSELTLPLEMQKASALVPALQSNWLMMHVSLMMLSYAILLIGSAFSIVYLVTSIVFLYNLESVEKRYFDYQEFMRGLINFTRGINLTREDYQTRSSIQSPSACCQIISLNNIFLEQEALAQSARTNFLSQLDKWSSRTISLGFPFLTIGIIAGAVWANEAWGSYWSWDPKETWALITCMV 705
YGYFPLSNLYESLLFLSFILLF YQFLE KA+SPIFGGI+LP+VLLISGF+ELTLPLEMQKA ALVPALQSNWLMMHVSLMMLSYAILLIGSAFSIVYLVT +VF Y + EKRYFDYQEFMRGL+N +G+ LTREDY+ RSSIQS AC +IISLNNIFLEQEA A+SARTNFLSQLDKWSSRTISLGFPFLTIGIIAGAVWANEAWGSYWSWDPKETWALIT ++
Sbjct: 63 YGYFPLSNLYESLLFLSFILLFSYQFLESKAKSPIFGGIILPIVLLISGFAELTLPLEMQKAGALVPALQSNWLMMHVSLMMLSYAILLIGSAFSIVYLVTLLVFSYTIRPFEKRYFDYQEFMRGLVNLAKGMTLTREDYKIRSSIQSAYACPEIISLNNIFLEQEAFAESARTNFLSQLDKWSSRTISLGFPFLTIGIIAGAVWANEAWGSYWSWDPKETWALITWLI 291
BLAST of mRNA_F-serratus_M_contig1251.1897.1 vs. uniprot
Match: A0A8F0F9V5_9PHAE (Cytochrome c biogenesis protein CcsA n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9V5_9PHAE) HSP 1 Score: 253 bits (647), Expect = 1.290e-80 Identity = 138/228 (60.53%), Postives = 170/228 (74.56%), Query Frame = 1
Query: 22 GYFPLSNLYESLLFLSFILLFLYQFLEYKAQSPIFGGIVLPLVLLISGFSELTLPLEMQKASALVPALQSNWLMMHVSLMMLSYAILLIGSAFSIVYLVTSIVFLYNLESVEKRYFDYQEFMRGLINFTRGINLTREDYQTRSSIQSPSACCQIISLNNIFLEQEALAQSARTNFLSQLDKWSSRTISLGFPFLTIGIIAGAVWANEAWGSYWSWDPKETWALITCMV 705
GYFPLSNLYESLLFLS ILLF+YQ LEYK QS +FG I++P+VL I+GF+ LTLPLEMQKA+ALVPALQSNWLMMHVSLMMLSYAIL++GSAFSIVY+ + ++++ R +Y++ +R + +NLTR + + L+ I+ E+E + + RT FL +D WS R ISLGFPFLTIGIIAGAVWANEAWGSYWSWDPKETWALIT ++
Sbjct: 70 GYFPLSNLYESLLFLSCILLFVYQILEYKTQSSLFGCIIVPIVLFITGFAALTLPLEMQKANALVPALQSNWLMMHVSLMMLSYAILIMGSAFSIVYVGAFLELEDYIKTIPVRAAEYEKQIR------KSLNLTRSQFL-------------YLGLDVIYNEEEDIVINNRTKFLYHIDNWSYRAISLGFPFLTIGIIAGAVWANEAWGSYWSWDPKETWALITWLI 278
BLAST of mRNA_F-serratus_M_contig1251.1897.1 vs. uniprot
Match: A0A6G6D7D1_ECTSI (Cytochrome c biogenesis protein CcsA n=7 Tax=Ectocarpales TaxID=2877 RepID=A0A6G6D7D1_ECTSI) HSP 1 Score: 250 bits (639), Expect = 1.850e-79 Identity = 136/227 (59.91%), Postives = 170/227 (74.89%), Query Frame = 1
Query: 19 YGYFPLSNLYESLLFLSFILLFLYQFLEYKAQSPIFGGIVLPLVLLISGFSELTLPLEMQKASALVPALQSNWLMMHVSLMMLSYAILLIGSAFSIVYLVTSIVFLYNLESVEKRYFDYQEFMRGLINFTRGINL-TREDYQTRSSIQSPSACCQIISLNNIFLEQEALAQSARTNFLSQLDKWSSRTISLGFPFLTIGIIAGAVWANEAWGSYWSWDPKETWALIT 696
+GYFPLSNLYESLLFLS +LLF+YQ LEYK QSP+FGGI+LP+VL I+ F+ LPLEMQKASALVPALQSNWLMMHVSLMMLSY++L++GS+ +I+YLV + F + ++ R Y++ +R R + L +RE+Y + L+ I+ E++ + + RTNFL +D WS R+ISLGFPFLTIGIIAGAVWANEAWGSYWSWDPKETWALIT
Sbjct: 64 FGYFPLSNLYESLLFLSCLLLFVYQVLEYKIQSPVFGGIILPIVLFITAFAVFKLPLEMQKASALVPALQSNWLMMHVSLMMLSYSLLMVGSSLAILYLVVFLEFEDYVRTMPLRTAAYEKSIR------RDLGLKSREEYLN-------------LGLHLIYKEEQDIVLNIRTNFLYNIDSWSFRSISLGFPFLTIGIIAGAVWANEAWGSYWSWDPKETWALIT 271
BLAST of mRNA_F-serratus_M_contig1251.1897.1 vs. uniprot
Match: A0A6B7IK16_9PHAE (Cytochrome c biogenesis protein CcsA n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7IK16_9PHAE) HSP 1 Score: 249 bits (636), Expect = 5.260e-79 Identity = 133/226 (58.85%), Postives = 166/226 (73.45%), Query Frame = 1
Query: 19 YGYFPLSNLYESLLFLSFILLFLYQFLEYKAQSPIFGGIVLPLVLLISGFSELTLPLEMQKASALVPALQSNWLMMHVSLMMLSYAILLIGSAFSIVYLVTSIVFLYNLESVEKRYFDYQEFMRGLINFTRGINLTREDYQTRSSIQSPSACCQIISLNNIFLEQEALAQSARTNFLSQLDKWSSRTISLGFPFLTIGIIAGAVWANEAWGSYWSWDPKETWALIT 696
+GYFPLSNLYESLLFLS +LLF+YQ LEYK Q+P+FGGI+LP+VL I+ F+ LPLEMQKASALVPALQSNWLMMHVSLMMLSY++L++GS+ +I+YLV + F + + R Y++ +R + TRE+Y + L+ I+++++A RT FL +D WS R+ISLGFPFLTIGIIAGAVWANEAWGSYWSWDPKETWALIT
Sbjct: 64 FGYFPLSNLYESLLFLSCLLLFVYQVLEYKIQTPVFGGIILPIVLFITAFAVFKLPLEMQKASALVPALQSNWLMMHVSLMMLSYSLLIVGSSLAILYLVLFLEFEEYIRMMPIRKIAYEKSVRKELGLK-----TREEYLR-------------LGLDRIYIDEQATILKIRTTFLYNIDSWSFRSISLGFPFLTIGIIAGAVWANEAWGSYWSWDPKETWALIT 271
BLAST of mRNA_F-serratus_M_contig1251.1897.1 vs. uniprot
Match: A0A1I9LVC5_9PHAE (Cytochrome c biogenesis protein CcsA n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVC5_9PHAE) HSP 1 Score: 248 bits (633), Expect = 1.490e-78 Identity = 133/226 (58.85%), Postives = 169/226 (74.78%), Query Frame = 1
Query: 19 YGYFPLSNLYESLLFLSFILLFLYQFLEYKAQSPIFGGIVLPLVLLISGFSELTLPLEMQKASALVPALQSNWLMMHVSLMMLSYAILLIGSAFSIVYLVTSIVFLYNLESVEKRYFDYQEFMRGLINFTRGINLTREDYQTRSSIQSPSACCQIISLNNIFLEQEALAQSARTNFLSQLDKWSSRTISLGFPFLTIGIIAGAVWANEAWGSYWSWDPKETWALIT 696
+GYFPLSNLYESLLFL+ +LLF+YQ LEYK QSPIFGGI+LP+VL I+ F+ LPL MQKASALVPALQSNWLMMHVSLMMLSY++L+IGS+ +I+YLV + F + ++ R +Y++ M+ ++ G+ +E + + L+ I+ E++ + + RTNFL +D WS R+ISLGFPFLTIGIIAGAVWANEAWGSYWSWDPKETWALIT
Sbjct: 64 FGYFPLSNLYESLLFLACLLLFVYQVLEYKIQSPIFGGIILPIVLFITAFTIFNLPLAMQKASALVPALQSNWLMMHVSLMMLSYSLLIIGSSLAILYLVGFLEFENYIRTMPIREAEYEKVMQRIL----GLKNRKEHLR--------------LGLHLIYKEEQDIVLNIRTNFLYNIDSWSFRSISLGFPFLTIGIIAGAVWANEAWGSYWSWDPKETWALIT 271
BLAST of mRNA_F-serratus_M_contig1251.1897.1 vs. uniprot
Match: A0A516ICR2_9PHAE (Cytochrome c biogenesis protein CcsA n=27 Tax=Laminariales TaxID=2886 RepID=A0A516ICR2_9PHAE) HSP 1 Score: 247 bits (630), Expect = 4.800e-78 Identity = 136/229 (59.39%), Postives = 168/229 (73.36%), Query Frame = 1
Query: 19 YGYFPLSNLYESLLFLSFILLFLYQFLEYKAQSPIFGGIVLPLVLLISGFSELTLPLEMQKASALVPALQSNWLMMHVSLMMLSYAILLIGSAFSIVYLVTSIVFLYNLESVEKRYFDYQEFMRGLINFTRGINLTREDYQTRSSIQSPSACCQIISLNNIFLEQEALAQSARTNFLSQLDKWSSRTISLGFPFLTIGIIAGAVWANEAWGSYWSWDPKETWALITCMV 705
+GYFPLSNLYESLLFLS ILLF+ Q LE K QS +FG I++P+VL I+GF+ LTLPLEMQKASALVPALQSNWLMMHVSLMMLSYAIL+IGS+F+IVY+ + + ++++ R +Y++ MR +N T+ L + L+ I+ E+E + + RT FL +D WS R ISLGFPFLTIGIIAGAVWANEAWGSYWSWDPKETWALIT ++
Sbjct: 69 FGYFPLSNLYESLLFLSCILLFVSQALESKTQSLLFGCIIVPIVLFITGFAALTLPLEMQKASALVPALQSNWLMMHVSLMMLSYAILIIGSSFAIVYVGSFLELEDYIKTIPVRAAEYEKHMRKTLNLTKSQFL-------------------YLGLDVIYNEEEDIVINNRTKFLYNIDNWSYRAISLGFPFLTIGIIAGAVWANEAWGSYWSWDPKETWALITWLI 278
BLAST of mRNA_F-serratus_M_contig1251.1897.1 vs. uniprot
Match: A0A8F0FAP1_9PHAE (Cytochrome c biogenesis protein CcsA n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAP1_9PHAE) HSP 1 Score: 245 bits (625), Expect = 2.490e-77 Identity = 140/237 (59.07%), Postives = 167/237 (70.46%), Query Frame = 1
Query: 22 GYFPLSNLYESLLFLSFILLFLYQFLEYKAQSPIFGGIVLPLVLLISGFSELTLPLEMQKASALVPALQSNWLMMHVSLMMLSYAILLIGSAFSIVYLVTSIVFLYNLESVEKRYFDYQEFMRGLINFTRGINLTREDYQTRSSIQSPSACCQIISLNNIFLE---------QEALAQSARTNFLSQLDKWSSRTISLGFPFLTIGIIAGAVWANEAWGSYWSWDPKETWALITCMV 705
GYFPLSNLYESLLFLS I+LF+YQF+EYK +S IFG I+LPLVL I+GF++LTLPLEM+KASALVPALQSNWLMMHVSLMMLSYAIL++GS SI++L I+FL + E + Y + E+Y +I+ I L N+FL+ Q+ L +S + FL LD W RTISLGFPFLTIGIIAGAVWANEAWGSYWSWDPKETWALIT ++
Sbjct: 64 GYFPLSNLYESLLFLSCIILFVYQFIEYKTKSKIFGAILLPLVLFITGFADLTLPLEMRKASALVPALQSNWLMMHVSLMMLSYAILIVGSLVSILFL---IIFLSLSKDSEISFTSYGSY---------------EEYARAENIE-------IRDLYNVFLDPLDKMSASKQKELRESRKLEFLYNLDNWGYRTISLGFPFLTIGIIAGAVWANEAWGSYWSWDPKETWALITWLI 275
BLAST of mRNA_F-serratus_M_contig1251.1897.1 vs. uniprot
Match: A0A8F0F862_9PHAE (Cytochrome c biogenesis protein CcsA n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F862_9PHAE) HSP 1 Score: 234 bits (598), Expect = 3.360e-73 Identity = 135/229 (58.95%), Postives = 160/229 (69.87%), Query Frame = 1
Query: 19 YGYFPLSNLYESLLFLSFILLFLYQFLEYKAQSPIFGGIVLPLVLLISGFSELTLPLEMQKASALVPALQSNWLMMHVSLMMLSYAILLIGSAFSIVYLVTSIVFLYNLESVEKRYFDYQEFMRGLINFTRGINLTREDYQTRSSIQSPSACCQIISLNNIFLEQEALAQSARTNFLSQLDKWSSRTISLGFPFLTIGIIAGAVWANEAWGSYWSWDPKETWALITCMV 705
YGYFPLSNLYESLLFL+ +L ++Q LEY+ QS FG I+LP++L I+ F++LTLPLEMQKASALVPALQSNWLMMHVSLMMLSYAILL+GS FSI++L+T + S+ K +F Q + I ED+Q + S S I +N + L + FL LD WS RTISLGFP LTIGIIAGAVWANEAWGSYWSWDPKETWALIT +V
Sbjct: 63 YGYFPLSNLYESLLFLACLLSLVHQILEYQTQSKFFGTIILPIILFITSFADLTLPLEMQKASALVPALQSNWLMMHVSLMMLSYAILLLGSLFSIIFLITFLPLPKESSSITKDFFSTQSEIALKIE---------EDFQ--KYLNSNSVEAGGIQINESIQKYYDL-NLLKIKFLITLDNWSYRTISLGFPLLTIGIIAGAVWANEAWGSYWSWDPKETWALITWLV 279
BLAST of mRNA_F-serratus_M_contig1251.1897.1 vs. uniprot
Match: A0A8E5XRE0_9PHAE (Cytochrome c biogenesis protein CcsA n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRE0_9PHAE) HSP 1 Score: 226 bits (576), Expect = 4.760e-70 Identity = 129/232 (55.60%), Postives = 159/232 (68.53%), Query Frame = 1
Query: 19 YGYFPLSNLYESLLFLSFILLFLYQFLEYKAQSPIFGGIVLPLVLLISGFSELTLPLEMQKASALVPALQSNWLMMHVSLMMLSYAILLIGSAFSIVYLVTSIVFLYNLESVEKRYFDYQEFMRGLINFTRGINLTREDYQTRSSIQSPSACCQIISLNNIFLEQEALAQSARTNF---LSQLDKWSSRTISLGFPFLTIGIIAGAVWANEAWGSYWSWDPKETWALITCMV 705
+GYFPLSNLYESLLFLS +LL +++FLEY+ QS +FG +LP++LLI+ F++LTLPLEMQKA+ALVP+LQSNWLMMHVSLMMLSYA+L+IGS SI++L+ + N E T +Y+ SI + +I+ I E E L ++ L+ LD WS RTISLGFPFLTIGIIAGAVWANEAWGSYWSWDPKETWALIT +V
Sbjct: 63 FGYFPLSNLYESLLFLSCMLLLVHRFLEYRTQSKLFGATLLPIILLITSFADLTLPLEMQKANALVPSLQSNWLMMHVSLMMLSYAVLIIGSLISILFLIVCLPIKVNYEE----------------------KFTNTNYEAGESIIN------LITQQPIKGELEQLKILYNMDYNSLLNNLDNWSYRTISLGFPFLTIGIIAGAVWANEAWGSYWSWDPKETWALITWLV 266 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1251.1897.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1251.1897.1 >prot_F-serratus_M_contig1251.1897.1 ID=prot_F-serratus_M_contig1251.1897.1|Name=mRNA_F-serratus_M_contig1251.1897.1|organism=Fucus serratus male|type=polypeptide|length=239bp MGFNYLYGYFPLSNLYESLLFLSFILLFLYQFLEYKAQSPIFGGIVLPLVback to top mRNA from alignment at F-serratus_M_contig1251:113762..114478+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1251.1897.1 ID=mRNA_F-serratus_M_contig1251.1897.1|Name=mRNA_F-serratus_M_contig1251.1897.1|organism=Fucus serratus male|type=mRNA|length=717bp|location=Sequence derived from alignment at F-serratus_M_contig1251:113762..114478+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1251:113762..114478+ >mRNA_F-serratus_M_contig1251.1897.1 ID=mRNA_F-serratus_M_contig1251.1897.1|Name=mRNA_F-serratus_M_contig1251.1897.1|organism=Fucus serratus male|type=CDS|length=1434bp|location=Sequence derived from alignment at F-serratus_M_contig1251:113762..114478+ (Fucus serratus male)back to top |