mRNA_F-serratus_M_contig1249.1889.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1249.1889.1
Unique NamemRNA_F-serratus_M_contig1249.1889.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1249.1889.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1249contigF-serratus_M_contig1249:205871..208088 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size321
Cds size183
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1249.1889.1prot_F-serratus_M_contig1249.1889.1Fucus serratus malepolypeptideF-serratus_M_contig1249 206009..208088 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929175.591419-UTR-F-serratus_M_contig1249:205870..2060081622929175.591419-UTR-F-serratus_M_contig1249:205870..206008Fucus serratus maleUTRF-serratus_M_contig1249 205871..206008 -
1690962737.4690795-UTR-F-serratus_M_contig1249:205870..2060081690962737.4690795-UTR-F-serratus_M_contig1249:205870..206008Fucus serratus maleUTRF-serratus_M_contig1249 205871..206008 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929175.6061285-CDS-F-serratus_M_contig1249:206008..2060091622929175.6061285-CDS-F-serratus_M_contig1249:206008..206009Fucus serratus maleCDSF-serratus_M_contig1249 206009..206009 -
1690962737.4779334-CDS-F-serratus_M_contig1249:206008..2060091690962737.4779334-CDS-F-serratus_M_contig1249:206008..206009Fucus serratus maleCDSF-serratus_M_contig1249 206009..206009 -
1622929175.6221695-CDS-F-serratus_M_contig1249:207906..2080881622929175.6221695-CDS-F-serratus_M_contig1249:207906..208088Fucus serratus maleCDSF-serratus_M_contig1249 207907..208088 -
1690962737.488298-CDS-F-serratus_M_contig1249:207906..2080881690962737.488298-CDS-F-serratus_M_contig1249:207906..208088Fucus serratus maleCDSF-serratus_M_contig1249 207907..208088 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1249.1889.1

>prot_F-serratus_M_contig1249.1889.1 ID=prot_F-serratus_M_contig1249.1889.1|Name=mRNA_F-serratus_M_contig1249.1889.1|organism=Fucus serratus male|type=polypeptide|length=61bp
APSIQCVFLFPNQTNPKHTPSREAAIFSWVKFIPYASIRGLTRLVGTHLQ
HGPERCAFIA*
back to top

mRNA from alignment at F-serratus_M_contig1249:205871..208088-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1249.1889.1 ID=mRNA_F-serratus_M_contig1249.1889.1|Name=mRNA_F-serratus_M_contig1249.1889.1|organism=Fucus serratus male|type=mRNA|length=2218bp|location=Sequence derived from alignment at F-serratus_M_contig1249:205871..208088- (Fucus serratus male)
GCCCCATCAATTCAGTGTGTGTTTCTGTTCCCCAACCAAACCAACCCCAA
GCACACTCCCTCTCGTGAGGCTGCCATATTTTCGTGGGTAAAGTTCATCC
CTTATGCTAGCATAAGAGGTTTGACTCGACTGGTTGGCACCCACCTTCAG
CATGGCCCCGAGAGGTGCGCTTTCATAGCGTAGTTCTAGAAGTCTTCTTT
TTTCACGATTCGACAGAGGGTCATCGGATAAAATTTCGACTCGGACATCT
GCCGAAGACTTCATGGACGAGGGGATTATTGGTTAGCTTCGGCGCCTGCC
CGTTCTTGGGATCGTGGCGCGCGTTGCTTTGTGAGGGGGTTCATGTTCGA
GCAGGACGAGACTGCAGCGCTTTTTTGAAGAATCGATGATTGGGTATAGC
CTGACGGGAAATTTTGTACGAGCGAATTGCCACGCCGTACGACAGCGCTT
CAAATCGCTGACTCCCGGGCAAGGTCGCCGGCTGTGTGATGCCGTGCGAG
GATGAGGATATTTCGTCGAGGACGATTCGAGGTTATTGGAAGCTAGGGGC
GATGGATTGTCGGGGAGCGTCATGGAGGAGCTTGACGAAGAGCCCCACGG
AGAACCTAGAAGGGCTAAGACACCATCACCAGCTCATTTCCTCTGCTCCT
ATCTCCAAAGACAGTGGTATGATTTTTACAAAGTTTTGTTTGAGCTTTGT
TGTACCGCTGTAATACAGAAAATAATGCCCAGTACCCATCTTTCTTTAGT
ATTCTGTGCATGTATGCATTAAGAATAAGATAGTCACGCATAGTCTGCTC
TCGGTGCGGACGTTTGTTTGTTCAGTGAGGGCTGCTTTTAAAATCTCGTA
TAGTAGCAGCTGCTTGTTTGAGTAAAGTCTCAGTTTGCGGTAAACGTTTA
GATGGGGAATATATCGTACTGTTGATGCGAATGCTCGTCATGATCGCTGA
CTTGACTTGAGTACCCCGATGTCTGACATGAAACGTCGTACTGTACCGCT
GTTGTACCTGATGACTGTTTTTCGCTCGCAAGCTATACGAACAACTCCGC
GTATTGTTTTAGTGTTGATTGTTCCTCCGAAATATATTATTTCTTGCACT
GTCGCATGCTTGCAGCAGTTGTAGTCGTGATAGGATAATCAGAATTCGTT
CACAATGTCGTTTGTTATGTAGCACTTTTGATCTCGGATGATGAAAAGCT
TGCTTGCGTCATTTTTAGGAGCAATATCTGATCCCGACGTTTCGGAATAA
GAAGCCTTGATTTAATCATGGTACGCAAGATGACTGAAATTCAGAGTTGA
AAGATAACTGGTAGGACTTATAAGGAAGAGCTGATCAAATATTTCTTGAG
AGATCATCCCGAAGTCATGACTGAGTAGTCTAGTGGTTTAGCGCTTCTAA
CGGGTGTTAGTTGCGGCCATTGTAGATACTGCAGTGCATGGCGAAGGGAG
GTTCTCGGAGACAACTCATTTAACATGTGAGATTTTGAGGCACCAGGACA
GTGATGCAGTGTAGTGGTTGAGTGGAATAGGTGCTATCCTCCCATGCATT
ATGCACCTGAATTTGTGGTATGAAGGGGAGATTTGAGGAATGAACCCCGA
ATAGCATTTGACTCGAGGGTCAGCGGGGAAGAGGTAAGGCTCGCATGCTA
TTGTACACAAAATTCCTGATTCGTGGTAATTAGGGGATGAGGTAGACCCT
TACTAGTATTCGACTCGAGGGTCAGCGGGGATGAGAGGATATCGCCCGTA
AGCTGGTATACCCGAATGTTGTGACCAGAGGGAAGAGAGTCCTCTCGCCG
TCTCTTCGAATAAAATAGGTTGATCGAGCTTTGCTCTCAGTTCGTCTTAA
CCAGCGATTTTTGATCTTTGTAATTTCGCCTGATTATGATACCGTGATAA
CGCAATCACTTCTTACCTTCTTGATGATTGACAGTAAGGGCTATTTTCTG
ACAGTATAGTCAGAAGAATTAGTTGCCCAAATGGACTAGTAAATGTTACT
TCGTATGTCTTGAAATGCATCAGATATCAATAGCTAGATTTTAGTCGCAT
GACATGCCAAATTTGATGTGTTTGCAAAGAGTTGCAATGACTACGTACCA
CTAAAGTTCAGATGGCGATCGTTAGTTGATTGATAGCGAATGATCCAGAG
TAACATTTGAATATGCTTGTCTTGAGTTACACAGTAATTTTCCTTTGAGA
GCTCGCTTCCCAGAAGAA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1249:205871..208088-

>mRNA_F-serratus_M_contig1249.1889.1 ID=mRNA_F-serratus_M_contig1249.1889.1|Name=mRNA_F-serratus_M_contig1249.1889.1|organism=Fucus serratus male|type=CDS|length=366bp|location=Sequence derived from alignment at F-serratus_M_contig1249:205871..208088- (Fucus serratus male)
GCCCCATCAATTCAGTGTGTGTTTCTGTTCCCCAACCAAACCAACCCCAA
GCACACTCCCTCTCGTGAGGCTGCCATATTTTCGTGGGTAAAGTTCATCC
CTTATGCTAGCATAAGAGGTTTGACTCGACTGGTTGGCACCCACCTTCAG
CATGGCCCCGAGAGGTGCGCTTTCATAGCGTAGCCCCATCAATTCAGTGT
GTGTTTCTGTTCCCCAACCAAACCAACCCCAAGCACACTCCCTCTCGTGA
GGCTGCCATATTTTCGTGGGTAAAGTTCATCCCTTATGCTAGCATAAGAG
GTTTGACTCGACTGGTTGGCACCCACCTTCAGCATGGCCCCGAGAGGTGC
GCTTTCATAGCGTAAA
back to top