mRNA_F-serratus_M_contig1249.1884.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1249.1884.1 vs. uniprot
Match: D7FZ57_ECTSI (Plastid-lipid associated protein PAP / fibrillin family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ57_ECTSI) HSP 1 Score: 209 bits (533), Expect = 4.180e-66 Identity = 99/123 (80.49%), Postives = 114/123 (92.68%), Query Frame = 1
Query: 1 ESLSALWILEWTTEREILFLMKNGLPGQPSGPVKQEIDVDAKTLSNIMVFGKDSLFEVASTIDPE-SGPRVNFEFKACKFKYGGIQVPLPPVGQGWFESVYLDEDLRVTRDIRGDVSVLVKSK 366
ESLSA WILEWTTEREI+FLM+ GLPG+PSGPV+Q+IDVDA+TLSN M+FG DSLFEVAS+IDPE SGPRVNFEF+ACK KYGG +PLPPVG+GWFESVYLD+DLRVTRD+RGDV+VLVK +
Sbjct: 143 ESLSARWILEWTTEREIIFLMERGLPGKPSGPVEQDIDVDARTLSNRMIFGDDSLFEVASSIDPEDSGPRVNFEFEACKLKYGGFTIPLPPVGKGWFESVYLDQDLRVTRDVRGDVTVLVKGQ 265
BLAST of mRNA_F-serratus_M_contig1249.1884.1 vs. uniprot
Match: A0A833RJB5_9POAL (Putative plastid-lipid-associated protein 11 n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833RJB5_9POAL) HSP 1 Score: 124 bits (310), Expect = 4.720e-33 Identity = 62/122 (50.82%), Postives = 85/122 (69.67%), Query Frame = 1
Query: 1 ESLSALWILEWTTEREILFLMKN-GLPGQPSGPVKQEIDVDAKTLSNIMVFGKDSLFEVASTIDPESGPRVNFEFKACKFKYGGIQVPLPPVGQGWFESVYLDEDLRVTRDIRGDVSVLVKS 363
+SLSA W + WTTE+E LF++KN GL G +G V Q IDV+ K L+N++ F +F V STI+ E RVNF+F + + ++PLPP GQGWFESVYLD+D+RV +DIRGD V+ ++
Sbjct: 86 KSLSATWRMLWTTEKEQLFIVKNAGLFGTEAGDVLQVIDVENKRLNNVITFPPSGVFFVRSTIETEPPQRVNFKFTSAVLRGSSWEIPLPPFGQGWFESVYLDDDIRVAKDIRGDYLVVERA 207
BLAST of mRNA_F-serratus_M_contig1249.1884.1 vs. uniprot
Match: A0A835YUD2_9STRA (PAP_fibrillin domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUD2_9STRA) HSP 1 Score: 119 bits (299), Expect = 4.000e-31 Identity = 60/126 (47.62%), Postives = 79/126 (62.70%), Query Frame = 1
Query: 7 LSALWILEWTTEREILFLMKNGLPGQPSGPVKQEIDVDAKTLSNIMVFGK-------DSLFEVASTIDPE-SGPRVNFEFKACKFKYGGIQVPLPPVGQGWFESVYLDEDLRVTRDIRGDVSVLVK 360
L+ W+L+WT E+E FL+K+GL G +G V Q ID + LSN ++FG F+V ST PE SG RVNFEF +C ++ VPLPPVG+GWF SVYLDE +R+T D RGD + +
Sbjct: 112 LNGKWVLQWTDEKETAFLLKSGLFGLKTGEVSQTIDTKQQVLSNAVLFGTGDDVASAQGTFQVGSTAIPETSGARVNFEFLSCSIRWKKFTVPLPPVGKGWFASVYLDESMRITTDSRGDRQIFTR 237
BLAST of mRNA_F-serratus_M_contig1249.1884.1 vs. uniprot
Match: U5FPZ5_POPTR (PAP_fibrillin domain-containing protein n=8 Tax=Saliceae TaxID=238069 RepID=U5FPZ5_POPTR) HSP 1 Score: 119 bits (297), Expect = 4.050e-31 Identity = 59/122 (48.36%), Postives = 84/122 (68.85%), Query Frame = 1
Query: 1 ESLSALWILEWTTEREILFLMKNG-LPGQPSGPVKQEIDVDAKTLSNIMVFGKDSLFEVASTIDPESGPRVNFEFKACKFKYGGIQVPLPPVGQGWFESVYLDEDLRVTRDIRGDVSVLVKS 363
+SLSA W L WTTE+E LF+++ L G +G V Q IDV+ +TL+N++ F D +F V S+I+ S RVNF F + + ++PLPP GQGWFES+Y+DE++RV +DIRGD V+ K+
Sbjct: 84 DSLSATWRLLWTTEKEQLFIIEKAPLFGTQAGDVLQVIDVEKRTLNNVITFPPDGVFFVRSSIEVSSSQRVNFRFTSAVLRGKNWEIPLPPFGQGWFESLYIDEEIRVVKDIRGDYLVVDKA 205
BLAST of mRNA_F-serratus_M_contig1249.1884.1 vs. uniprot
Match: A0A067JY60_JATCU (PAP_fibrillin domain-containing protein n=3 Tax=Jatropha curcas TaxID=180498 RepID=A0A067JY60_JATCU) HSP 1 Score: 119 bits (297), Expect = 4.270e-31 Identity = 62/123 (50.41%), Postives = 81/123 (65.85%), Query Frame = 1
Query: 4 SLSALWILEWTTEREILFLMKNG-LPGQPSGPVKQEIDVDAKTLSNIMVFGKDSLFEVASTIDPESGPRVNFEFKACKFKYGGIQVPLPPVGQGWFESVYLDEDLRVTRDIRGDVSVLVKSKN 369
SLSA W L WTTE+E LF+++ L G +G V Q IDV+ KTL+N++ F D +F V S I+ S RVNF F + + ++PLPP GQGWF+SVYLD DLRV +DIRGD V+ S +
Sbjct: 87 SLSATWRLLWTTEKEQLFIIEKAPLFGTQAGDVLQVIDVEKKTLNNVITFPPDGVFFVRSNIEIASSQRVNFRFTSAVLRGKNWEIPLPPFGQGWFQSVYLDGDLRVAKDIRGDYLVVAHSSD 209
BLAST of mRNA_F-serratus_M_contig1249.1884.1 vs. uniprot
Match: UPI000C873454 (probable plastid-lipid-associated protein 11, chloroplastic n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI000C873454) HSP 1 Score: 119 bits (298), Expect = 4.300e-31 Identity = 59/118 (50.00%), Postives = 81/118 (68.64%), Query Frame = 1
Query: 4 SLSALWILEWTTEREILFLMKN-GLPGQPSGPVKQEIDVDAKTLSNIMVFGKDSLFEVASTIDPESGPRVNFEFKACKFKYGGIQVPLPPVGQGWFESVYLDEDLRVTRDIRGDVSVL 354
+LSA W + WTTE+E LF++KN GL G +G V Q IDV L+N++ F D +F V S+IDP RVNF+F + + ++PLPP GQGWFESVY+D+++RV +DIRGD V+
Sbjct: 101 ALSATWRMLWTTEKEQLFIIKNAGLFGTAAGDVLQVIDVGNGVLNNVITFPPDGVFFVRSSIDPAPPQRVNFKFTSAVLRGSNWEIPLPPFGQGWFESVYMDDEIRVAKDIRGDYLVV 218
BLAST of mRNA_F-serratus_M_contig1249.1884.1 vs. uniprot
Match: A0A830B0F5_9LAMI (Probable plastid-lipid-associated protein 11 n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830B0F5_9LAMI) HSP 1 Score: 118 bits (296), Expect = 6.350e-31 Identity = 59/122 (48.36%), Postives = 82/122 (67.21%), Query Frame = 1
Query: 1 ESLSALWILEWTTEREILFLMKNG-LPGQPSGPVKQEIDVDAKTLSNIMVFGKDSLFEVASTIDPESGPRVNFEFKACKFKYGGIQVPLPPVGQGWFESVYLDEDLRVTRDIRGDVSVLVKS 363
ESLSA W + WTTE+E LF++KN + G +G V Q IDVD KTL+N++ F D +F V S I S RVNF F + + G + PLPP GQGWFES+Y+D+++RV +DIR D ++ ++
Sbjct: 88 ESLSATWRMLWTTEKEQLFIIKNAPIFGTSAGDVLQVIDVDQKTLNNVITFPPDGVFFVRSEIQVASAQRVNFRFTSAVLRGKGWEFPLPPFGQGWFESLYIDDEIRVVKDIRQDYLIVERA 209
BLAST of mRNA_F-serratus_M_contig1249.1884.1 vs. uniprot
Match: A0A3Q7IE21_SOLLC (PAP_fibrillin domain-containing protein n=4 Tax=Solanum TaxID=4107 RepID=A0A3Q7IE21_SOLLC) HSP 1 Score: 118 bits (295), Expect = 7.120e-31 Identity = 60/121 (49.59%), Postives = 81/121 (66.94%), Query Frame = 1
Query: 4 SLSALWILEWTTEREILFLMKNG-LPGQPSGPVKQEIDVDAKTLSNIMVFGKDSLFEVASTIDPESGPRVNFEFKACKFKYGGIQVPLPPVGQGWFESVYLDEDLRVTRDIRGDVSVLVKS 363
SLSA W L WTTE+E LF++KN G +G V Q IDV+ KTL+N++ F D +F V STI+ S RVNF F + + + PLPP GQGWFE+VYLD+D+RV +DIR D ++ ++
Sbjct: 80 SLSATWRLLWTTEKEQLFIIKNASFFGTKAGDVLQVIDVEKKTLNNVITFPPDGVFFVRSTIEVASSQRVNFRFTSAVLRGKNWEFPLPPFGQGWFETVYLDDDIRVVKDIRQDYLIVERA 200
BLAST of mRNA_F-serratus_M_contig1249.1884.1 vs. uniprot
Match: A0A251LVN5_MANES (PAP_fibrillin domain-containing protein n=5 Tax=Manihot esculenta TaxID=3983 RepID=A0A251LVN5_MANES) HSP 1 Score: 118 bits (295), Expect = 8.320e-31 Identity = 60/118 (50.85%), Postives = 80/118 (67.80%), Query Frame = 1
Query: 4 SLSALWILEWTTEREILFLMKNG-LPGQPSGPVKQEIDVDAKTLSNIMVFGKDSLFEVASTIDPESGPRVNFEFKACKFKYGGIQVPLPPVGQGWFESVYLDEDLRVTRDIRGDVSVL 354
SLSA W L WTTE+E LF+++ L G +G V Q IDV+ KTL+N++ F D +F V S I+ S RVNF F + + ++PLPP GQGWFESVY+D+D+RV +DIRGD V+
Sbjct: 86 SLSATWRLLWTTEKEQLFIIEKAPLFGTKAGDVLQVIDVEKKTLNNVITFPPDRVFFVRSNIEIASSQRVNFRFTSAVLRGKSWEIPLPPFGQGWFESVYIDDDIRVVKDIRGDYLVV 203
BLAST of mRNA_F-serratus_M_contig1249.1884.1 vs. uniprot
Match: A0A251UGL2_HELAN (Putative plastid-lipid associated protein PAP / fibrillin family protein n=3 Tax=Helianthus annuus TaxID=4232 RepID=A0A251UGL2_HELAN) HSP 1 Score: 117 bits (293), Expect = 1.540e-30 Identity = 58/118 (49.15%), Postives = 80/118 (67.80%), Query Frame = 1
Query: 4 SLSALWILEWTTEREILFLMKN-GLPGQPSGPVKQEIDVDAKTLSNIMVFGKDSLFEVASTIDPESGPRVNFEFKACKFKYGGIQVPLPPVGQGWFESVYLDEDLRVTRDIRGDVSVL 354
SLS W L WTTE+E LF+++N G G +G V Q IDV+ ++L+N++ F D +F V S ++ S RVNF F + + G + PLPP GQGWFESVYLDE++R+ +DIRGD V+
Sbjct: 92 SLSGTWRLLWTTEKEQLFIVENAGFFGTKAGDVLQVIDVEKRSLNNVITFPPDGVFFVRSDVEIASSQRVNFRFTSAVLRGKGWEFPLPPFGQGWFESVYLDEEIRIVKDIRGDYLVV 209 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1249.1884.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1249.1884.1 >prot_F-serratus_M_contig1249.1884.1 ID=prot_F-serratus_M_contig1249.1884.1|Name=mRNA_F-serratus_M_contig1249.1884.1|organism=Fucus serratus male|type=polypeptide|length=124bp ESLSALWILEWTTEREILFLMKNGLPGQPSGPVKQEIDVDAKTLSNIMVFback to top mRNA from alignment at F-serratus_M_contig1249:142156..143185+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1249.1884.1 ID=mRNA_F-serratus_M_contig1249.1884.1|Name=mRNA_F-serratus_M_contig1249.1884.1|organism=Fucus serratus male|type=mRNA|length=1030bp|location=Sequence derived from alignment at F-serratus_M_contig1249:142156..143185+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1249:142156..143185+ >mRNA_F-serratus_M_contig1249.1884.1 ID=mRNA_F-serratus_M_contig1249.1884.1|Name=mRNA_F-serratus_M_contig1249.1884.1|organism=Fucus serratus male|type=CDS|length=744bp|location=Sequence derived from alignment at F-serratus_M_contig1249:142156..143185+ (Fucus serratus male)back to top |