mRNA_F-serratus_M_contig1242.1854.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1242.1854.1 vs. uniprot
Match: D7G1V8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1V8_ECTSI) HSP 1 Score: 111 bits (278), Expect = 1.160e-24 Identity = 75/203 (36.95%), Postives = 103/203 (50.74%), Query Frame = 2
Query: 401 LVDPVKLKEYRNKWTSEESNLVRAMRFNTEAIAGTNTAVPPNFRLGQTRKIPGTPKAVDRLRAKVLEHGLRGIVKLRQALLGSRPRWSNH-------------LHSSDLANALKAVGAKPLAQTDNEKVLDFFAGEKGAAAEASDLVRTIT--GTMNERRRRAANDVLEALYNTNNSGAIQKGEVKRLFDTALSGGPTDKRNR 964
+ DP KL+EYR WT E+ + VR +RF T+A+ NT VP FR+ + RK+PGTPKAV+RLRAK LE G GIV+L QAL R +NH L +DL L G PL D +KV++F A +D++ + G +++ R A + SG I +KR +D A + T K R
Sbjct: 1 MTDPDKLREYRRNWTVED-DCVRPVRFKTDAVTSANTGVPARFRMSEMRKLPGTPKAVERLRAKALEGGQMGIVRLHQAL--QRRLQANHTEPRTSDVAQHRLLQPNDLMEGLSGAGLTPLTAFDAKKVIEFCTKGGDDGASITDVLEELRFGGPVDDDYRVQAVKGAFRELDEGGSGLISARGLKRRYDAAAASTRTLKAMR 200
BLAST of mRNA_F-serratus_M_contig1242.1854.1 vs. uniprot
Match: A0A6G0WXL4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WXL4_9STRA) HSP 1 Score: 57.0 bits (136), Expect = 4.480e-5 Identity = 51/193 (26.42%), Postives = 95/193 (49.22%), Query Frame = 2
Query: 572 VDRLRAKVLEHGLRGIVKLRQALLGSRPRWSNH-LHSSDLANALKAVGAKP--LAQTDNEKVLDFFAGEKGAAAEASDLVRTITGTMNERRRRAANDVLEALYNTNNSGAIQKGEVKRLFDTA-----LSG--GPTDKRNREALEATELLSDHWHIYQDKGEGYVPIEGFDAFLSDLSGGIESDEDFEVMVRS 1120
+DR+++ +LE+G + ++ Q +L + + + + N L +G +P + ++ +KV +F + +L+R + G M++RR + + L + + G + E+ FDT+ LSG P D R+ L E D +G+G V F A+ DLS GI+SD++FE++VR+
Sbjct: 107 IDRVKSMILENGGKNGIRTLQVILRRMDQNGDKTIDKEEFHNGLLELGIQPNEIEGSELDKVFAYFDRDGNGRITLDELLRGLRGGMSKRRIQFVRKAFD-LLDESRDGVVTIDEIADRFDTSHHPDVLSGLLKPQDVL-RQFLAGFEGNRD------GQGDGVVTWSEFLAYYRDLSAGIDSDDEFELIVRN 291 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1242.1854.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1242.1854.1 >prot_F-serratus_M_contig1242.1854.1 ID=prot_F-serratus_M_contig1242.1854.1|Name=mRNA_F-serratus_M_contig1242.1854.1|organism=Fucus serratus male|type=polypeptide|length=375bp MMTQGGGANSLRGGLKLYGPKTKSGNWMELEKEPGKALPAGFPHKMYLSDback to top mRNA from alignment at F-serratus_M_contig1242:108970..126268+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1242.1854.1 ID=mRNA_F-serratus_M_contig1242.1854.1|Name=mRNA_F-serratus_M_contig1242.1854.1|organism=Fucus serratus male|type=mRNA|length=17299bp|location=Sequence derived from alignment at F-serratus_M_contig1242:108970..126268+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1242:108970..126268+ >mRNA_F-serratus_M_contig1242.1854.1 ID=mRNA_F-serratus_M_contig1242.1854.1|Name=mRNA_F-serratus_M_contig1242.1854.1|organism=Fucus serratus male|type=CDS|length=2250bp|location=Sequence derived from alignment at F-serratus_M_contig1242:108970..126268+ (Fucus serratus male)back to top |