mRNA_F-serratus_M_contig1242.1852.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1242.1852.1
Unique NamemRNA_F-serratus_M_contig1242.1852.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1242.1852.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1242contigF-serratus_M_contig1242:54097..55144 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons3
Model size347
Cds size279
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1242.1852.1prot_F-serratus_M_contig1242.1852.1Fucus serratus malepolypeptideF-serratus_M_contig1242 54097..54759 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929169.675594-CDS-F-serratus_M_contig1242:54096..543091622929169.675594-CDS-F-serratus_M_contig1242:54096..54309Fucus serratus maleCDSF-serratus_M_contig1242 54097..54309 +
1690962734.115766-CDS-F-serratus_M_contig1242:54096..543091690962734.115766-CDS-F-serratus_M_contig1242:54096..54309Fucus serratus maleCDSF-serratus_M_contig1242 54097..54309 +
1622929169.6937282-CDS-F-serratus_M_contig1242:54693..547591622929169.6937282-CDS-F-serratus_M_contig1242:54693..54759Fucus serratus maleCDSF-serratus_M_contig1242 54694..54759 +
1690962734.1274579-CDS-F-serratus_M_contig1242:54693..547591690962734.1274579-CDS-F-serratus_M_contig1242:54693..54759Fucus serratus maleCDSF-serratus_M_contig1242 54694..54759 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929169.7169468-UTR-F-serratus_M_contig1242:54759..547731622929169.7169468-UTR-F-serratus_M_contig1242:54759..54773Fucus serratus maleUTRF-serratus_M_contig1242 54760..54773 +
1690962734.1359909-UTR-F-serratus_M_contig1242:54759..547731690962734.1359909-UTR-F-serratus_M_contig1242:54759..54773Fucus serratus maleUTRF-serratus_M_contig1242 54760..54773 +
1622929169.742898-UTR-F-serratus_M_contig1242:55091..551441622929169.742898-UTR-F-serratus_M_contig1242:55091..55144Fucus serratus maleUTRF-serratus_M_contig1242 55092..55144 +
1690962734.1449609-UTR-F-serratus_M_contig1242:55091..551441690962734.1449609-UTR-F-serratus_M_contig1242:55091..55144Fucus serratus maleUTRF-serratus_M_contig1242 55092..55144 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1242.1852.1

>prot_F-serratus_M_contig1242.1852.1 ID=prot_F-serratus_M_contig1242.1852.1|Name=mRNA_F-serratus_M_contig1242.1852.1|organism=Fucus serratus male|type=polypeptide|length=93bp
NFPTPRWTRRRHRKAKKDKGPPKRREWLVSAIITSVVVFAWLRIFALVVH
SPRDGDRTLGSLLADDGVASVIEQLENVLKESMGKHGKDISW*
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mRNA from alignment at F-serratus_M_contig1242:54097..55144+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1242.1852.1 ID=mRNA_F-serratus_M_contig1242.1852.1|Name=mRNA_F-serratus_M_contig1242.1852.1|organism=Fucus serratus male|type=mRNA|length=1048bp|location=Sequence derived from alignment at F-serratus_M_contig1242:54097..55144+ (Fucus serratus male)
AATTTTCCGACGCCACGCTGGACCCGAAGGCGTCACCGGAAAGCTAAAAA
GGACAAGGGTCCTCCGAAAAGACGGGAATGGCTGGTCTCGGCCATCATCA
CCTCGGTCGTCGTCTTTGCCTGGTTGAGAATTTTCGCTCTCGTTGTGCAT
TCTCCCAGGGATGGCGATCGTACTTTGGGAAGTCTTCTCGCGGATGACGG
TGTAGCTTCCGTGGTGAGCACAGGGACCGGTTTTGACAGGAGGGCCGGTG
GCGTCCGAAAGTCTTTATTTAGTGGAGAGGACGAGGGCATCATCAACCTT
CAGAGTGGCATGCCCGCAACCACTAGACTCGGTGACAGCAGGACCGTGTC
CCACGGAGGCGGCAATCAGCACCCAGACTTGTCCTTTTTGAATCCACGGG
CGTTAGAAATGGTCGCTGCGGACATGGGTCACCTCAGGAACATGGTGAGC
CTTGTCTCTCGTCCTGTTACAACGCTCAGCTCCATAAATTGTTTGAGATT
TCATGTCCACGGATGTTGTAGCCGTGATCAAATGAATCGCGTTTTTCCAG
GGGTGGTCTCAAACCCCCACACGCCCTGCCTTTCCGGCCGTGTGCAGATA
GAGCAACTCGAGAACGTTCTCAAGGAAAGCATGGGGAAACACGGGAAAGA
CATTTCCTGGTGATGCACCAGCTCGGGGTAAGATCGAAAAGAAAAAAAAC
AGAAAATGTCACCGAGCGAGAAACTGACCGTGGTGTGTCGGCGACTGCTT
ACGGAATTTAAATATTTTTCGGTAGGAGGTGACCCCACGCGCAGGTTATC
ATTATGCCATCACTCGTGAAATTTTCTGCTGTCCCGAAAAATGGCGTTTG
ATTTCGTGGTGCGTCCAAGATATATGTATAAGGTCAAGATCAGCGCCTGG
AGAAGAGACTGTAGCGCGGCACAAAAAAATTTGTCCGAAAACTGTAAAGC
CTGAGCTATCATACATGTCACTTGTTTCTTCGCCCGACCGAACAGAGCAG
CGGCGCGGAGGCTGACGTCTCGCCGGGTTTTAAAAGCCAGGAGGATGT
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Coding sequence (CDS) from alignment at F-serratus_M_contig1242:54097..55144+

>mRNA_F-serratus_M_contig1242.1852.1 ID=mRNA_F-serratus_M_contig1242.1852.1|Name=mRNA_F-serratus_M_contig1242.1852.1|organism=Fucus serratus male|type=CDS|length=558bp|location=Sequence derived from alignment at F-serratus_M_contig1242:54097..55144+ (Fucus serratus male)
AATTTTCCGACGCCACGCTGGACCCGAAGGCGTCACCGGAAAGCTAAAAA
GGACAAGGGTCCTCCGAAAAGACGGGAATGGCTGGTCTCGGCCATCATCA
CCTCGGTCGTCGTCTTTGCCTGGTTGAGAATTTTCGCTCTCGTTGTGCAT
TCTCCCAGGGATGGCGATCGTACTTTGGGAAGTCTTCTCGCGGATGACGG
TGTAGCTTCCGTGAATTTTCCGACGCCACGCTGGACCCGAAGGCGTCACC
GGAAAGCTAAAAAGGACAAGGGTCCTCCGAAAAGACGGGAATGGCTGGTC
TCGGCCATCATCACCTCGGTCGTCGTCTTTGCCTGGTTGAGAATTTTCGC
TCTCGTTGTGCATTCTCCCAGGGATGGCGATCGTACTTTGGGAAGTCTTC
TCGCGGATGACGGTGTAGCTTCCGTGATAGAGCAACTCGAGAACGTTCTC
AAGGAAAGCATGGGGAAACACGGGAAAGACATTTCCTGGTGAATAGAGCA
ACTCGAGAACGTTCTCAAGGAAAGCATGGGGAAACACGGGAAAGACATTT
CCTGGTGA
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