mRNA_F-serratus_M_contig1240.1843.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1240.1843.1
Unique NamemRNA_F-serratus_M_contig1240.1843.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1240.1843.1 vs. uniprot
Match: D7G8H4_ECTSI (WD repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8H4_ECTSI)

HSP 1 Score: 246 bits (627), Expect = 3.170e-75
Identity = 146/360 (40.56%), Postives = 188/360 (52.22%), Query Frame = 3 
Query:  117 SIVVRRVSC----AGDQDGEVTEMAFSAEGDHLITGTKDCGVRVWSVHSGETEVFAPPLAGINERGGYHAGHLSCDVIVDK-TRGVLMAAGSATGGVNVWCSEAGTRHMAELRDSGHPYGVPVEHLAAYPDGRLFVSADSTTMKIWSTEDFKCKRTMRSPFNIQILKVSSKCRFIFCAGE-------GRKNRGIVALWNGRKNDKALPTKGPRRS-IRVLRGHGRHIQSLYTPENEGKPNILYGLKYQQQQQKTQVLVTTSLDGRAKVWDVTSGACTRTLWGKGGLQSQLSNAALVNRGAWMVMAYNDGSIQ---QVWGLENGKCLITSDNGG--------------PRSKCLAVSRCGR 1106
            SIVVR +       G   G+++E+AFSA+G HL+TG K+  VR+W   SGE E+ APPLAG NE GGYHAGHLSCD+++   +RG+LM                                                         W  +DF CKRT+RS F ++IL VS++ +F+F AGE           R +VA+W+GRK  K  P  G  R   R+L GHGR I+SLYTP N                    VLVTT+LD   K+WDV +G CT+T+W KGGLQS LSNA LVN GAW++ +Y+DGS+Q   QVW ++ GKCL+T  N                P +  LAVSRCGR
Sbjct:   20 SIVVREIRSPSAGGGRAGGDISEIAFSADGAHLLTGAKNFAVRIWGTRSGEVELLAPPLAGSNEDGGYHAGHLSCDIVLHHPSRGMLM--------------------------------------------------------FWCAKDFTCKRTIRSTFGVKILMVSARGKFVFVAGEQGXXXXXXXXXRAVVAVWDGRKRGKIYPGFGGERDPTRLLTGHGRPIRSLYTPHNPD------------------VLVTTALDATVKIWDVPTGTCTKTIWSKGGLQSPLSNAGLVNHGAWLLTSYDDGSLQTTGQVWIIQTGKCLLTLVNAAAAAAAADGVAVLPRPGAARLAVSRCGR 305
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1240.1843.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8H4_ECTSI3.170e-7540.56WD repeat-containing protein n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1240contigF-serratus_M_contig1240:127345..130518 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionWD40/YVTN repeat-like-containing domain
Ec32 orthologEc-14_003040.1
Exons5
Model size1268
Cds size1188
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1240.1843.1prot_F-serratus_M_contig1240.1843.1Fucus serratus malepolypeptideF-serratus_M_contig1240 127345..130438 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929168.1942763-CDS-F-serratus_M_contig1240:127344..1275991622929168.1942763-CDS-F-serratus_M_contig1240:127344..127599Fucus serratus maleCDSF-serratus_M_contig1240 127345..127599 -
1690962733.1703224-CDS-F-serratus_M_contig1240:127344..1275991690962733.1703224-CDS-F-serratus_M_contig1240:127344..127599Fucus serratus maleCDSF-serratus_M_contig1240 127345..127599 -
1622929168.2069-CDS-F-serratus_M_contig1240:127939..1281121622929168.2069-CDS-F-serratus_M_contig1240:127939..128112Fucus serratus maleCDSF-serratus_M_contig1240 127940..128112 -
1690962733.1801028-CDS-F-serratus_M_contig1240:127939..1281121690962733.1801028-CDS-F-serratus_M_contig1240:127939..128112Fucus serratus maleCDSF-serratus_M_contig1240 127940..128112 -
1622929168.2173727-CDS-F-serratus_M_contig1240:128518..1288251622929168.2173727-CDS-F-serratus_M_contig1240:128518..128825Fucus serratus maleCDSF-serratus_M_contig1240 128519..128825 -
1690962733.1878428-CDS-F-serratus_M_contig1240:128518..1288251690962733.1878428-CDS-F-serratus_M_contig1240:128518..128825Fucus serratus maleCDSF-serratus_M_contig1240 128519..128825 -
1622929168.2272248-CDS-F-serratus_M_contig1240:128981..1292331622929168.2272248-CDS-F-serratus_M_contig1240:128981..129233Fucus serratus maleCDSF-serratus_M_contig1240 128982..129233 -
1690962733.1961021-CDS-F-serratus_M_contig1240:128981..1292331690962733.1961021-CDS-F-serratus_M_contig1240:128981..129233Fucus serratus maleCDSF-serratus_M_contig1240 128982..129233 -
1622929168.2371206-CDS-F-serratus_M_contig1240:130237..1304381622929168.2371206-CDS-F-serratus_M_contig1240:130237..130438Fucus serratus maleCDSF-serratus_M_contig1240 130238..130438 -
1690962733.2042115-CDS-F-serratus_M_contig1240:130237..1304381690962733.2042115-CDS-F-serratus_M_contig1240:130237..130438Fucus serratus maleCDSF-serratus_M_contig1240 130238..130438 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929168.2504783-UTR-F-serratus_M_contig1240:130438..1305181622929168.2504783-UTR-F-serratus_M_contig1240:130438..130518Fucus serratus maleUTRF-serratus_M_contig1240 130439..130518 -
1690962733.2126877-UTR-F-serratus_M_contig1240:130438..1305181690962733.2126877-UTR-F-serratus_M_contig1240:130438..130518Fucus serratus maleUTRF-serratus_M_contig1240 130439..130518 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1240.1843.1

>prot_F-serratus_M_contig1240.1843.1 ID=prot_F-serratus_M_contig1240.1843.1|Name=mRNA_F-serratus_M_contig1240.1843.1|organism=Fucus serratus male|type=polypeptide|length=396bp
MKGVKHASGRCGSIVVRRVSCAGDQDGEVTEMAFSAEGDHLITGTKDCGV
RVWSVHSGETEVFAPPLAGINERGGYHAGHLSCDVIVDKTRGVLMAAGSA
TGGVNVWCSEAGTRHMAELRDSGHPYGVPVEHLAAYPDGRLFVSADSTTM
KIWSTEDFKCKRTMRSPFNIQILKVSSKCRFIFCAGEGRKNRGIVALWNG
RKNDKALPTKGPRRSIRVLRGHGRHIQSLYTPENEGKPNILYGLKYQQQQ
QKTQVLVTTSLDGRAKVWDVTSGACTRTLWGKGGLQSQLSNAALVNRGAW
MVMAYNDGSIQQVWGLENGKCLITSDNGGPRSKCLAVSRCGRLVAFAIGK
SVQVIDFDRLADRSRAGRPSEPGTYLRQALRFITAPNVFGKKSLN*
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mRNA from alignment at F-serratus_M_contig1240:127345..130518-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1240.1843.1 ID=mRNA_F-serratus_M_contig1240.1843.1|Name=mRNA_F-serratus_M_contig1240.1843.1|organism=Fucus serratus male|type=mRNA|length=3174bp|location=Sequence derived from alignment at F-serratus_M_contig1240:127345..130518- (Fucus serratus male)
CTCGTCTGAAGCGTTTACGTATAATTAATCAGGTGAATCTCAGTATTGGC
TCGTAGGCTCTGCCATTCTGCACGAAAATCATGAAGGGCGTCAAGCATGC
GAGTGGCAGGTGCGGAAGTATTGTCGTGCGAAGAGTGTCCTGCGCTGGTG
ATCAAGACGGTGAAGTTACGGAAATGGCCTTTTCGGCAGAAGGAGATCAT
CTCATTACCGGAACGAAGGATTGTGGTGTGCGTGTTTGGAGCGTGCATTC
CGGCGAGACCGAAGTGTTCGCCCCACCACTGGTACTTACCTTCTTATAAT
CGGGACTAGAAAAGCGTGGTGCCGTAGGAGTATCGTACGCTCGCGGTGAA
TCGGCACATAATATCACTTGGCTCCAAGACTCTGTTGTTGCTGAGGTTTT
GAGATATAGAGCTACCAGTACGGAGAAACTACTTGTCTAGGCACTGCGAG
GTATATTGTGCCATTTGCCTTGATTGAGACAAGCGACAAGTGCAAAGGAC
GAGAAGATGGGTAAGTAGTGCGAAGTAGCCATGGATCACTATACTCGACG
AAATGGTGTAGAATATACGGGGACATGAAGGATCAGACCGAAAAAGGCTT
CGTGACTAGTTAGTATACAGGTATATTTATGTATGATCATATATAGCAAA
GTATGGACCAACCAGGTGAGGTTGCCAATCCTGCTCGTGGTCAGCTGGAC
AGGGGAAATGATTTTTCCCTGTCCCCGTTCGTGCCTGGAAGTTTGGTCTC
GCGAGACGGGTTCGGCAGTCCTGTCCCGCGTCAGCCTGCTCATCTCCATA
CTCAGGCTGAATCTGGTGCTTACTTACTACGGGATTCCTCCCGAGTTGCG
CGGCGGCGTCCATTGATTTGTTTAAACCGCCATACGCCATCGGGTCAGTT
CCGTGTTTATCGGGTCACGCACTTGCGTACCGATGGCTTTCACTGTCGAG
AGTCCGCCGGCACAGGGCCAGTAAACCTCAAGGTAGTTCCAAACGGGTGC
TGCCTTGGCAGGTCACCACGGATTAATTAATATACGCCTCTCTTTCCCAC
ACTAACTATTAGTATGAAGTGGGCGTGTTGAAAGTACCGGCGGTATACGA
AGTAGTATTCAACTACTATTATTGGTACAACTCTATACCAGTAGTACTAT
GAACACATATAAACACGAAAAATGGCACACATCACACACCAGCCTTGATT
ATGTTGCATGCTCCAGCGTTAAACCGCCTCACACGCACTTCTGCTCCGCA
CTCCCTTGATGCATATGGGTGTTTGGGTGGCGAAGGCGGGGATCAACGAA
CGCGGAGGGTACCACGCTGGTCATCTGAGCTGCGATGTCATAGTCGATAA
GACGCGAGGCGTGCTTATGGCTGCAGGATCAGCGACGGGGGGGGTGAATG
TGTGGTGCAGCGAAGCAGGCACGCGCCACATGGCGGAGCTGCGTGATAGC
GGCCATCCCTATGGCGTTCCGGTAGAGCACCTCGCTGCTTACCCAGACGG
TCGCTTGTTCGTCAGTGCGGACAGCACCACTATGAAGGTATCACAGTAAT
GGCCGGAAACCAGACGGTTGAGAGCATGAAATGTTGTGATACTGTTTGAC
AAGCGACTTATTTGCTGCCGAAGTGTACAACACTCTCTCCAAAGTGTACA
TTTTCCCAACCAACGCGCTAGCCTTGGACGTGCACTTCGATAGATTTGGT
CTACGGAAGATTTTAAGTGCAAGCGCACCATGCGGAGCCCTTTCAATATC
CAGATCTTGAAGGTTTCTTCGAAATGTCGCTTCATTTTCTGCGCTGGGGA
AGGGAGGAAAAATCGCGGCATAGTCGCTCTTTGGAACGGTCGCAAAAACG
ACAAAGCTCTACCTACTAAAGGCCCACGGAGGTCGATCCGAGTTCTTCGA
GGACACGGTAGACACATTCAGTCGTTGTACACGCCCGAGAATGAAGGCAA
GCCGAACATTCTATACGGGCTGAAATATCAGCAACAACAACAAAAAACAC
GTGTTGGAAATGTCAGTCGTCTCGGTACTAGGAAATCCACAGCAAGACTT
CAGCCTTACAACGCGCTAGCCAGGGGAGGAAGTAGCTTTAGCGATGGCTA
AGAAGTTCGAATTTTGCCGCTCCAACAATTGATCGTCTACTTTGTGGCGA
ATGAGGGCCTTCGCAAGACGACGGTAGGGCGTGAAGGTCGTCATATAAGA
GCTGCTTTAATCAGTGAAAATCACGGATTGCGACCGTCGCGGAGTTCAGT
ACGGGTAGCTGACCAGAAAAAAGTGGGAGCCCTAAGAAGCGAGTAGGGAG
GCGCATTCAAACATAACACCATCTACGCTCTGCTTTACCATGCACATGCC
GTCGACGTGCACTGGTGGGAAACATGGGATCGGGATATTGGGGCAACTGT
CGGCAGAAGTTTTGGTCACGACGTCGCTCGATGGTAGGGCTAAAGTCTGG
GATGTAACATCTGGTGCGTGCACGAGAACGTTATGGGGCAAGGGGGGGCT
GCAGTCACAGCTCTCAAATGCAGCTTTGGTGAACCGTGGGGCCTGGATGG
TGATGGCTTACAATGATGGCTCAATTCAGGTGATCACGACCGAAATGTAT
CAATCTTTACTCACAGAGGCGTAGTTCCATCGGCGAAGGTTATAGTTTGT
TTCACTCACACACCATACTTTCGCACTTGACAGTTGCTAATATCCTCCTG
AGTGCACAACACAGGCGCTAGCCTCGGCTCGGAACGTTCACGCTACATCC
CTAGTTACCCACCTACCAAGTGCAAATGCTATTTGGTACACGTGTTGACG
CAAAAGATGATAATCGTCCTTATGTCTCATTTTTTGTAATATTTTGCAAG
TTGCAATGATATGTCCTCTAACAACTTAGTTGAAGTAAAACATGTTTCTT
GTCCATGTGTATAAAGTAGCAGGTGTGGGGCCTCGAAAATGGCAAATGTC
TCATCACTTCAGATAACGGAGGGCCACGGAGCAAGTGTCTGGCAGTCTCA
CGGTGTGGCAGGCTGGTTGCCTTCGCAATCGGGAAAAGCGTGCAAGTCAT
TGACTTTGACAGGCTTGCCGATCGGAGTAGAGCAGGAAGGCCAAGCGAGC
CGGGAACGTATCTGCGGCAAGCGCTGCGCTTCATCACCGCGCCAAACGTG
TTTGGAAAGAAATCGTTGAATTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1240:127345..130518-

>mRNA_F-serratus_M_contig1240.1843.1 ID=mRNA_F-serratus_M_contig1240.1843.1|Name=mRNA_F-serratus_M_contig1240.1843.1|organism=Fucus serratus male|type=CDS|length=2376bp|location=Sequence derived from alignment at F-serratus_M_contig1240:127345..130518- (Fucus serratus male)
ATGAAGGGCGTCAAGCATGCGAGTGGCAGGTGCGGAAGTATTGTCGTGCG
AAGAGTGTCCTGCGCTGGTGATCAAGACGGTGAAGTTACGGAAATGGCCT
TTTCGGCAGAAGGAGATCATCTCATTACCGGAACGAAGGATTGTGGTGTG
CGTGTTTGGAGCGTGCATTCCGGCGAGACCGAAGTGTTCGCCCCACCACT
GATGAAGGGCGTCAAGCATGCGAGTGGCAGGTGCGGAAGTATTGTCGTGC
GAAGAGTGTCCTGCGCTGGTGATCAAGACGGTGAAGTTACGGAAATGGCC
TTTTCGGCAGAAGGAGATCATCTCATTACCGGAACGAAGGATTGTGGTGT
GCGTGTTTGGAGCGTGCATTCCGGCGAGACCGAAGTGTTCGCCCCACCAC
TGGCGGGGATCAACGAACGCGGAGGGTACCACGCTGGTCATCTGAGCTGC
GATGTCATAGTCGATAAGACGCGAGGCGTGCTTATGGCTGCAGGATCAGC
GACGGGGGGGGTGAATGTGTGGTGCAGCGAAGCAGGCACGCGCCACATGG
CGGAGCTGCGTGATAGCGGCCATCCCTATGGCGTTCCGGTAGAGCACCTC
GCTGCTTACCCAGACGGTCGCTTGTTCGTCAGTGCGGACAGCACCACTAT
GAAGGCGGGGATCAACGAACGCGGAGGGTACCACGCTGGTCATCTGAGCT
GCGATGTCATAGTCGATAAGACGCGAGGCGTGCTTATGGCTGCAGGATCA
GCGACGGGGGGGGTGAATGTGTGGTGCAGCGAAGCAGGCACGCGCCACAT
GGCGGAGCTGCGTGATAGCGGCCATCCCTATGGCGTTCCGGTAGAGCACC
TCGCTGCTTACCCAGACGGTCGCTTGTTCGTCAGTGCGGACAGCACCACT
ATGAAGATTTGGTCTACGGAAGATTTTAAGTGCAAGCGCACCATGCGGAG
CCCTTTCAATATCCAGATCTTGAAGGTTTCTTCGAAATGTCGCTTCATTT
TCTGCGCTGGGGAAGGGAGGAAAAATCGCGGCATAGTCGCTCTTTGGAAC
GGTCGCAAAAACGACAAAGCTCTACCTACTAAAGGCCCACGGAGGTCGAT
CCGAGTTCTTCGAGGACACGGTAGACACATTCAGTCGTTGTACACGCCCG
AGAATGAAGGCAAGCCGAACATTCTATACGGGCTGAAATATCAGCAACAA
CAACAAAAAACACATTTGGTCTACGGAAGATTTTAAGTGCAAGCGCACCA
TGCGGAGCCCTTTCAATATCCAGATCTTGAAGGTTTCTTCGAAATGTCGC
TTCATTTTCTGCGCTGGGGAAGGGAGGAAAAATCGCGGCATAGTCGCTCT
TTGGAACGGTCGCAAAAACGACAAAGCTCTACCTACTAAAGGCCCACGGA
GGTCGATCCGAGTTCTTCGAGGACACGGTAGACACATTCAGTCGTTGTAC
ACGCCCGAGAATGAAGGCAAGCCGAACATTCTATACGGGCTGAAATATCA
GCAACAACAACAAAAAACACAAGTTTTGGTCACGACGTCGCTCGATGGTA
GGGCTAAAGTCTGGGATGTAACATCTGGTGCGTGCACGAGAACGTTATGG
GGCAAGGGGGGGCTGCAGTCACAGCTCTCAAATGCAGCTTTGGTGAACCG
TGGGGCCTGGATGGTGATGGCTTACAATGATGGCTCAATTCAGAAGTTTT
GGTCACGACGTCGCTCGATGGTAGGGCTAAAGTCTGGGATGTAACATCTG
GTGCGTGCACGAGAACGTTATGGGGCAAGGGGGGGCTGCAGTCACAGCTC
TCAAATGCAGCTTTGGTGAACCGTGGGGCCTGGATGGTGATGGCTTACAA
TGATGGCTCAATTCAGCAGGTGTGGGGCCTCGAAAATGGCAAATGTCTCA
TCACTTCAGATAACGGAGGGCCACGGAGCAAGTGTCTGGCAGTCTCACGG
TGTGGCAGGCTGGTTGCCTTCGCAATCGGGAAAAGCGTGCAAGTCATTGA
CTTTGACAGGCTTGCCGATCGGAGTAGAGCAGGAAGGCCAAGCGAGCCGG
GAACGTATCTGCGGCAAGCGCTGCGCTTCATCACCGCGCCAAACGTGTTT
GGAAAGAAATCGTTGAATTGACAGGTGTGGGGCCTCGAAAATGGCAAATG
TCTCATCACTTCAGATAACGGAGGGCCACGGAGCAAGTGTCTGGCAGTCT
CACGGTGTGGCAGGCTGGTTGCCTTCGCAATCGGGAAAAGCGTGCAAGTC
ATTGACTTTGACAGGCTTGCCGATCGGAGTAGAGCAGGAAGGCCAAGCGA
GCCGGGAACGTATCTGCGGCAAGCGCTGCGCTTCATCACCGCGCCAAACG
TGTTTGGAAAGAAATCGTTGAATTGA
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