mRNA_F-serratus_M_contig1240.1842.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1240.1842.1
Unique NamemRNA_F-serratus_M_contig1240.1842.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1240.1842.1 vs. uniprot
Match: D7G8H6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8H6_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 1.080e-24
Identity = 52/64 (81.25%), Postives = 59/64 (92.19%), Query Frame = 1
Query:    4 VVSSDLPPIWVPLAVCAVLVVGIGLLQGSLGDVMSDEAKLGGMSGARAAKQSSRDRSMFKKKNE 195
            VVSSDLPP+WVPLAV  VL +GIGLLQGSLGDVM+DEAKLG +SGARAAKQS+RDR MFKKK++
Sbjct:  106 VVSSDLPPMWVPLAVGFVLTLGIGLLQGSLGDVMNDEAKLGALSGARAAKQSARDRDMFKKKDQ 169          
BLAST of mRNA_F-serratus_M_contig1240.1842.1 vs. uniprot
Match: A0A836CD09_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD09_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 2.230e-17
Identity = 41/59 (69.49%), Postives = 50/59 (84.75%), Query Frame = 1
Query:   13 SDLPPIWVPLAVCAVLVVGIGLLQGSLGDVMSDEAKLGGMSGARAAKQSSRDRSMFKKK 189
             +LPP+WVPL + AV++ GIG  Q SLG+VM DEAKLGG+SGARAAKQS+R RSMFK+K
Sbjct:   48 DELPPMWVPLVLGAVVLAGIGAQQLSLGNVMDDEAKLGGLSGARAAKQSARGRSMFKRK 106          
BLAST of mRNA_F-serratus_M_contig1240.1842.1 vs. uniprot
Match: A0A6U1XMR7_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A6U1XMR7_TRICV)

HSP 1 Score: 67.4 bits (163), Expect = 1.630e-12
Identity = 34/59 (57.63%), Postives = 44/59 (74.58%), Query Frame = 1
Query:   13 SDLPPIWVPLAVCAVLVVGIGLLQGSLGDVMSDEAKLGGMSGARAAKQSSRDRSMFKKK 189
            ++LPP+WVP+     ++ G+GLL GSLGDVMSDEA LG MSGA+A K+  R RS + KK
Sbjct:   95 AELPPVWVPIVFAIAILGGVGLLTGSLGDVMSDEASLGLMSGAQAKKEMERSRSSYFKK 153          
BLAST of mRNA_F-serratus_M_contig1240.1842.1 vs. uniprot
Match: A0A7R9ZRN9_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZRN9_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 7.480e-11
Identity = 32/59 (54.24%), Postives = 43/59 (72.88%), Query Frame = 1
Query:   13 SDLPPIWVPLAVCAVLVVGIGLLQGSLGDVMSDEAKLGGMSGARAAKQSSRDRSMFKKK 189
            ++LPP+WVP     VL+VG+GLL GSLG+V+ +E+ LG  SGARA K+  R RS + KK
Sbjct:   65 AELPPVWVPAVFALVLLVGVGLLTGSLGNVIDEESMLGLQSGARAKKEIERSRSSYFKK 123          
BLAST of mRNA_F-serratus_M_contig1240.1842.1 vs. uniprot
Match: A0A7S3Y243_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y243_HETAK)

HSP 1 Score: 65.1 bits (157), Expect = 1.100e-10
Identity = 35/54 (64.81%), Postives = 41/54 (75.93%), Query Frame = 1
Query:    4 VVSSDLPPIWVPLAVCAVLVVGIGLLQGSLGDVMSDEAKLGGMSGARAAKQSSR 165
            V   +LPP+WVPLA  AVL VGIG+LQ SLGDVM  EA LG  SGARA K+++R
Sbjct:  459 VAKEELPPMWVPLATGAVLFVGIGVLQASLGDVMEAEAGLGSASGARARKENTR 512          
BLAST of mRNA_F-serratus_M_contig1240.1842.1 vs. uniprot
Match: A0A6U1Q394_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1Q394_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.000e-8
Identity = 30/54 (55.56%), Postives = 38/54 (70.37%), Query Frame = 1
Query:   19 LPPIWVPLAVCAVLVVGIGLLQGSLGDVMSDEAKLGGMSGARAAKQSSRDRSMF 180
            LPP WVP+ V   L+ G+GLLQ SLG+V  DEA LG  SGARA K+S+R++   
Sbjct:   89 LPPFWVPVGVAIALLGGVGLLQLSLGNVADDEAMLGSASGARARKESTRNKKFL 142          
BLAST of mRNA_F-serratus_M_contig1240.1842.1 vs. uniprot
Match: A0A6U4CKI4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4CKI4_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.000e-8
Identity = 32/58 (55.17%), Postives = 41/58 (70.69%), Query Frame = 1
Query:   10 SSDLPPIWVPLAVCAVLVVGIGLLQGSLGDVMSDEAKLGGMSGARA-AKQSSRDRSMF 180
            ++DLPP+WVPL V A+L+VGIG LQ  LGDV  +EA L    G +A + + SRDRS F
Sbjct:   79 TADLPPVWVPLGVAALLLVGIGALQLDLGDVFGEEALLDNAIGDKAKSTRESRDRSYF 136          
BLAST of mRNA_F-serratus_M_contig1240.1842.1 vs. uniprot
Match: A0A7S2SFC9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SFC9_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.100e-8
Identity = 35/64 (54.69%), Postives = 41/64 (64.06%), Query Frame = 1
Query:    1 AVVSSDLPPIWVPLAVCAVLVVGIGLLQGSLGDVMSDEAKLGGMSGARAAKQSSR-DRSMFKKK 189
            A    DLPP  +P+A  A + VG+GLLQGSLGDV   EA LG  SGA A K++ R  RS FK K
Sbjct:   81 AAAPPDLPPPAIPVAFAAAIFVGVGLLQGSLGDVYGQEADLGMSSGANARKEAERKSRSYFKDK 144          
BLAST of mRNA_F-serratus_M_contig1240.1842.1 vs. uniprot
Match: A0A1Z5K2E8_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K2E8_FISSO)

HSP 1 Score: 56.2 bits (134), Expect = 1.380e-8
Identity = 33/63 (52.38%), Postives = 44/63 (69.84%), Query Frame = 1
Query:    1 AVVSSDLPPIWVPLAVCAVLVVGIGLLQGSLGDVMSDEAKLGGMSGARAAKQSSRDRSMFKKK 189
            AV  ++LPP +VP+ V   L+VG+G+L  SLG+VM +EA LG  SGARA K+  R RS + KK
Sbjct:   45 AVELAELPPPYVPVLVGLGLLVGVGVLTSSLGNVMDEEASLGMQSGARAKKEIERSRSSYFKK 107          
BLAST of mRNA_F-serratus_M_contig1240.1842.1 vs. uniprot
Match: A0A7S2V989_9STRA (Hypothetical protein n=2 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2V989_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 3.080e-8
Identity = 32/59 (54.24%), Postives = 41/59 (69.49%), Query Frame = 1
Query:   13 SDLPPIWVPLAVCAVLVVGIGLLQGSLGDVMSDEAKLGGMSGARAAKQSSRDRSMFKKK 189
            ++LPP +VP      L+VG+GLL GSLG+VM +EA LG  SGARA K+  R RS + KK
Sbjct:   90 AELPPPYVPALFGVGLLVGVGLLTGSLGNVMDEEASLGMQSGARAKKEIERSRSSYFKK 148          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1240.1842.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7G8H6_ECTSI1.080e-2481.25Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CD09_9STRA2.230e-1769.49Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6U1XMR7_TRICV1.630e-1257.63Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7R9ZRN9_9STRA7.480e-1154.24Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S3Y243_HETAK1.100e-1064.81Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6U1Q394_9STRA1.000e-855.56Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6U4CKI4_9STRA1.000e-855.17Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2SFC9_9STRA1.100e-854.69Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A1Z5K2E8_FISSO1.380e-852.38Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A7S2V989_9STRA3.080e-854.24Hypothetical protein n=2 Tax=Amphiprora paludosa T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1240contigF-serratus_M_contig1240:89857..90060 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_003060.1
Exons1
Model size204
Cds size204
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929168.142311-CDS-F-serratus_M_contig1240:89856..900601622929168.142311-CDS-F-serratus_M_contig1240:89856..90060Fucus serratus maleCDSF-serratus_M_contig1240 89857..90060 -
1690962733.1510699-CDS-F-serratus_M_contig1240:89856..900601690962733.1510699-CDS-F-serratus_M_contig1240:89856..90060Fucus serratus maleCDSF-serratus_M_contig1240 89857..90060 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1240.1842.1prot_F-serratus_M_contig1240.1842.1Fucus serratus malepolypeptideF-serratus_M_contig1240 89857..90060 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1240.1842.1

>prot_F-serratus_M_contig1240.1842.1 ID=prot_F-serratus_M_contig1240.1842.1|Name=mRNA_F-serratus_M_contig1240.1842.1|organism=Fucus serratus male|type=polypeptide|length=68bp
AVVSSDLPPIWVPLAVCAVLVVGIGLLQGSLGDVMSDEAKLGGMSGARAA
KQSSRDRSMFKKKNEGP*
back to top

mRNA from alignment at F-serratus_M_contig1240:89857..90060-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1240.1842.1 ID=mRNA_F-serratus_M_contig1240.1842.1|Name=mRNA_F-serratus_M_contig1240.1842.1|organism=Fucus serratus male|type=mRNA|length=204bp|location=Sequence derived from alignment at F-serratus_M_contig1240:89857..90060- (Fucus serratus male)
GCGGTCGTGAGCAGTGACCTACCTCCCATCTGGGTTCCGCTGGCGGTGTG TGCGGTGCTCGTGGTGGGAATCGGCCTTTTGCAAGGCAGCTTGGGCGACG TGATGAGCGATGAGGCGAAACTCGGGGGCATGTCGGGGGCGAGGGCAGCG AAGCAGAGTTCTCGCGACCGAAGCATGTTCAAGAAGAAAAATGAGGGCCC ATGA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1240:89857..90060-

>mRNA_F-serratus_M_contig1240.1842.1 ID=mRNA_F-serratus_M_contig1240.1842.1|Name=mRNA_F-serratus_M_contig1240.1842.1|organism=Fucus serratus male|type=CDS|length=408bp|location=Sequence derived from alignment at F-serratus_M_contig1240:89857..90060- (Fucus serratus male)
GCGGTCGTGAGCAGTGACCTACCTCCCATCTGGGTTCCGCTGGCGGTGTG
TGCGGTGCTCGTGGTGGGAATCGGCCTTTTGCAAGGCAGCTTGGGCGACG
TGATGAGCGATGAGGCGAAACTCGGGGGCATGTCGGGGGCGAGGGCAGCG
AAGCAGAGTTCTCGCGACCGAAGCATGTTCAAGAAGAAAAATGAGGGCCC
ATGAGCGGTCGTGAGCAGTGACCTACCTCCCATCTGGGTTCCGCTGGCGG
TGTGTGCGGTGCTCGTGGTGGGAATCGGCCTTTTGCAAGGCAGCTTGGGC
GACGTGATGAGCGATGAGGCGAAACTCGGGGGCATGTCGGGGGCGAGGGC
AGCGAAGCAGAGTTCTCGCGACCGAAGCATGTTCAAGAAGAAAAATGAGG
GCCCATGA
back to top