mRNA_F-serratus_M_contig124.1840.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig124.1840.1
Unique NamemRNA_F-serratus_M_contig124.1840.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig124.1840.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig124contigF-serratus_M_contig124:796393..797442 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.6
Seed ortholog evalue5.4e-11
Seed eggNOG ortholog2880.D7G6F0
KEGG koko:K10752
KEGG Pathwayko04218,map04218
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.protein folding
EggNOG OGsCOG0484@1,KOG0714@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Exons2
Model size267
Cds size267
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929166.9228876-CDS-F-serratus_M_contig124:796392..7965941622929166.9228876-CDS-F-serratus_M_contig124:796392..796594Fucus serratus maleCDSF-serratus_M_contig124 796393..796594 +
1690962732.3927166-CDS-F-serratus_M_contig124:796392..7965941690962732.3927166-CDS-F-serratus_M_contig124:796392..796594Fucus serratus maleCDSF-serratus_M_contig124 796393..796594 +
1622929166.9395666-CDS-F-serratus_M_contig124:797377..7974421622929166.9395666-CDS-F-serratus_M_contig124:797377..797442Fucus serratus maleCDSF-serratus_M_contig124 797378..797442 +
1690962732.4054625-CDS-F-serratus_M_contig124:797377..7974421690962732.4054625-CDS-F-serratus_M_contig124:797377..797442Fucus serratus maleCDSF-serratus_M_contig124 797378..797442 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig124.1840.1prot_F-serratus_M_contig124.1840.1Fucus serratus malepolypeptideF-serratus_M_contig124 796393..797442 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig124.1840.1

>prot_F-serratus_M_contig124.1840.1 ID=prot_F-serratus_M_contig124.1840.1|Name=mRNA_F-serratus_M_contig124.1840.1|organism=Fucus serratus male|type=polypeptide|length=89bp
MTLNAVRSCCCWTFACITVVLAVAAIAGAGFSAFVVSIPLFLIAGVVMCC
MTCLICLCRDLPEEEDAEGDEEQGGLMGTSPLHYGATS*
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mRNA from alignment at F-serratus_M_contig124:796393..797442+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig124.1840.1 ID=mRNA_F-serratus_M_contig124.1840.1|Name=mRNA_F-serratus_M_contig124.1840.1|organism=Fucus serratus male|type=mRNA|length=1050bp|location=Sequence derived from alignment at F-serratus_M_contig124:796393..797442+ (Fucus serratus male)
ATGACGCTGAACGCGGTCAGGTCGTGTTGCTGCTGGACCTTTGCCTGCAT
CACGGTAGTCTTGGCCGTTGCGGCCATCGCCGGCGCAGGATTTTCGGCTT
TCGTGGTATCAATCCCATTGTTCCTCATCGCGGGCGTTGTCATGTGCTGC
ATGACATGCCTGATATGTTTGTGCCGGGACCTGCCGGAGGAGGAGGATGC
AGGTGGGCGTCAATATTGGCTCAACTTGGGCTTCCCCGGGGATGTTTGGT
GGCTGTCCCCGCCCTATTTTATTCCGCGAGTTACTCACGTACAGTACTAT
TTATAAACGCGCAGCAAAGAAACAAGTTCGGCGGGTTGTAGGAAATTTCA
CTGCGACACCAGTTCTCCGAAAGAGTTTGTAGTATACACATTGAATTCTT
GTGTGCGTGTCCGTGCCTGTGCGCGCGTGCGTTGCGCGCTAACACCGATA
AAAAGTAAATAAATAAATAAAAATGTCAGCATTGAGACGAGGGACACATG
TAGCACCACTGGAGTACTTAGAGCATAGTCGTAGGCAGGCAGGCAGCATG
CTTTGGAAGGACGAGAGACAAATAGAGCCGAGTCCACAAGCGCTGTCGCC
TGAGTTTCGTTGAAATTGCACTGGTACAGCATCGCCATCGACTGCGCTCG
CGGGTGGCTCCTGTTCATCCGTCGCATAGAGCGGCAGCGGCAACGCTCTT
TCTGCCAAATTTCTCTATCTTGTGCTATCTTGTGCCGTGCCCCATTCGAC
CACCATACCATATCATACCACAATACCATACCATCTCATCTCCCATGATT
TTCGTGACGGTAACCGTCTGACCCCTCGGCGTCTACCAATTCAATCCATT
CCACCCCCATCCCTCATCTTCAGTATATACTGTATCGCCTGCTTCTCTCG
TCAAACTTTACCTGGTAGCTTACTTCAAACCAACATTTTCGATTTTGATG
TGGCCCTTTCTTTTCTTTTAAAAACACCATCTCAGAAGGCGATGAGGAAC
AAGGCGGGCTGATGGGCACGAGCCCCCTCCATTACGGGGCGACCTCGTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig124:796393..797442+

>mRNA_F-serratus_M_contig124.1840.1 ID=mRNA_F-serratus_M_contig124.1840.1|Name=mRNA_F-serratus_M_contig124.1840.1|organism=Fucus serratus male|type=CDS|length=534bp|location=Sequence derived from alignment at F-serratus_M_contig124:796393..797442+ (Fucus serratus male)
ATGACGCTGAACGCGGTCAGGTCGTGTTGCTGCTGGACCTTTGCCTGCAT
CACGGTAGTCTTGGCCGTTGCGGCCATCGCCGGCGCAGGATTTTCGGCTT
TCGTGGTATCAATCCCATTGTTCCTCATCGCGGGCGTTGTCATGTGCTGC
ATGACATGCCTGATATGTTTGTGCCGGGACCTGCCGGAGGAGGAGGATGC
AGATGACGCTGAACGCGGTCAGGTCGTGTTGCTGCTGGACCTTTGCCTGC
ATCACGGTAGTCTTGGCCGTTGCGGCCATCGCCGGCGCAGGATTTTCGGC
TTTCGTGGTATCAATCCCATTGTTCCTCATCGCGGGCGTTGTCATGTGCT
GCATGACATGCCTGATATGTTTGTGCCGGGACCTGCCGGAGGAGGAGGAT
GCAGAAGGCGATGAGGAACAAGGCGGGCTGATGGGCACGAGCCCCCTCCA
TTACGGGGCGACCTCGTGAAAGGCGATGAGGAACAAGGCGGGCTGATGGG
CACGAGCCCCCTCCATTACGGGGCGACCTCGTGA
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