mRNA_F-serratus_M_contig124.1836.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig124.1836.1 vs. uniprot
Match: D7G1N7_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1N7_ECTSI) HSP 1 Score: 668 bits (1723), Expect = 1.740e-210 Identity = 435/1068 (40.73%), Postives = 576/1068 (53.93%), Query Frame = 3
Query: 270 ENYKVNFWESVKATFPWTEAGAKAAYAEERLVAVDEFRGELDQALLIQKMIDAGMHDRALKRLMASTEGQMYHNFHKHRHALEQSGGWSFTPSSVQRKLKTPTKRADAVENLRKYVAMRRDRFRRIRCLCDQVKSAIINSTDRIVPVVPGNLIGKKTLAISEGMMKNTPQGDV--SKRKKCKWQGVSSKSEVFTCTNDRMEHPQRQFPDKFGVLVHDTLATCGWHASHCVSSVHGKDAVVISTANEGALCNECLAQIIKGPLKNSTAFSAPRVRLKRKNNIKHGEENTLVRNKWFTKAPGRLRENAVCPRHPYAPPGAPPASVRPPAIFIPPPPSPPLLSVENLRQHRELAKWRLRKIRAGAAAVTMLQKTFRGYRSRRERERLFFEHPGRARKRVESAIVLQSLARRFLARVLERQIKTFRGLSVTNIQRIVRGKQNRKLFRLMRARAIIRRSISFFVARAFVSSLREARRVRAETRKKEAVVRSLQRIWRAKREIKRALVSMDMEMWRVGKLIIVQNAWRCYCARVELSRCRAFCENFIKAAIVVQSAFRMTVAMRYTVNLRQEYEIAVGTIQPVVRGMLARALAHRERALVNKAWAWLGIVPKEGNQMYARFLPKTTYSIRRGSLDNPPHSIATRTKNNSTSAKGNNVFSG----TSLVSGGLESLFGEKHFTNRFDRERTGKCTITEFKLGLGSFCQAVGYVLQRKEAQAISRRFFDGDASCAWSSFLRAYHEGAGESVACTRHSRLLCVSCVRHGRCEKAGCLCTKAHARRSEQLEFEMCKCGHPFEAHAVLRDSLPDEDGS-----DLHGSHVPSSEKLNSILAANVTVSGNDLPVHVEGCSMDSAL----------------------GVGKDEKVGGVLSP-----LSKKRRRTRILPRQQRCSNCSRERG-----TVRKSAETDNILTPTRLRHIQVASTSSTSKSPTSKG-----MKRLLEIRR----------------LPNIREAKAKDKERRSLSSAGLRGQAKRAALTEMNSVVQSSNVMEYSTIIQGNPAKNRVLEKQSMVRLAPQQSNKELR 3281
EN++V FW+S+KA PWTEAGAKA YAEERL A EF+ ELD+AL I+KM++ G+HD AL RLMASTEGQMYH+FHKHR+ LEQ+G W+F P SV+R+ + K+ D VE LR Y+AMRRDRF RIR LC QV++A + S+D +V V P +LI + L ++ G K+ P ++ KKC WQ V+SK E CTN+RM HP R F D+FGVL+HDTLATCGWHA+ CVS+ HG D VVISTANEGALCNECL Q+ KGP++N+TAF AP VR K K + G +T PG E + L+K + G A +Q+T+RGYR+R R + EHP RA RVESAIV+QSL RRFLAR L RQI FR ++ T IQ++ RG Q R LFR RAR +++R + F +ARA V+S + ARR+R E RKK AV S QR WR K+ ++A + + + R G S RM R T +R+E++ AV T+QP+VRG+LAR A RERAL+ + W WLG N +YARFLPK Y + R S S + N + + + G +SLV LE+L GE+HFT +FDR+RTG C+ EFK+GL SF + GY LQ++EA I +R+FDGD CAW SFL +YH +S AC RH RLLC C+R ++QL F+MC+CGH F+AH ++ G D G VP + L+++L+ ++ + D P++VEGCS S L G GG +P S+ RRR R + + + E T AE R + + + SPT+ G K L++ R +P+ +EA++++KERR S AG RGQA+RAAL EMNS VQ N +Y+ +Q + A N + LAP S KELR
Sbjct: 70 ENFEVGFWDSLKAVLPWTEAGAKADYAEERLDAHHEFQEELDEALRIRKMVETGLHDMALDRLMASTEGQMYHHFHKHRYQLEQTGEWTFVPPSVKRRWRHAVKKTDKVEKLRAYMAMRRDRFLRIRGLCRQVRNARLKSSDLLVTVEPESLIDENLLQVAGGGKKSKPANPFGGARLKKCHWQNVNSKGEQCFCTNNRMVHPHRLFKDEFGVLIHDTLATCGWHATRCVSNSHGDDPVVISTANEGALCNECLVQLTKGPIRNTTAFGAPGVRFKNK---RLGSADT---------DPGTGGEEFL-----------------------------------------------LQKEKNGERAARAVQRTYRGYRARHLRAMVALEHPLRALLRVESAIVMQSLVRRFLARTLVRQISAFRNMNATAIQKMARGMQARALFRRKRARKMVQRQMLFLLARAHVASAKVARRIREEMRKKNAVALSFQRAWRGKKGREKAAMLRAITVRRHGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTIRMFADRRRTQKMRREFDGAVRTLQPLVRGLLARVTARRERALLGQVWGWLGTDTVTANGIYARFLPKNKYLVSRESAPLQQFSASQSASGNVDAGNYDELQKGLGSTSSLVRSTLEALPGERHFTEKFDRDRTGTCSKVEFKIGLESFLREAGYPLQKEEAALIVKRYFDGDGFCAWHSFLNSYHNAGSKSSACARHGRLLCTLCIR------------------TKQLGFKMCECGHVFDAHELVVGGSGPAKGETVRKQDQRGRVVPQKQ-LSALLSKGLSKTVVDRPINVEGCSAASNLRRAQYTNNSPSQAALISAQRPNGFRVTGARGGTKTPPHATTSSRARRRWRRQKPGRGSRSITEEASQPGGITALSLAELSPPFFGRRTSADGADGSGAAALSPTATGDVAGFPKENLDMVRPANQGATSPNKRKITYIPSFQEARSQEKERRDASCAGRRGQAERAALAEMNSAVQGKNAADYAAKLQDDIATN-TSRVDGRLCLAPVMSKKELR 1058
BLAST of mRNA_F-serratus_M_contig124.1836.1 vs. uniprot
Match: A0A6H5JL35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL35_9PHAE) HSP 1 Score: 236 bits (602), Expect = 1.290e-63 Identity = 157/451 (34.81%), Postives = 224/451 (49.67%), Query Frame = 3
Query: 1533 LSVTNIQRIVRGKQNRKLFRLMRARAIIRRSISFFVARAFVSSLREARRVRAETRKKEAVVRSLQRIWRAKREIKRALVSMDMEMWRVGKLIIVQNAWRCYCARVELSRCRAFCENFIKAAIVVQSAFRMTVAMRYTVNLRQEYEIAVGTIQPVVRGMLARALAHRERALVNKAWAWLGIVPKEGNQMYARFLPKTTYSIRRGSLD------NPPHSIATRTKNNSTSAKGN------------------------NVFSGTSLVSGGLESLFGEKHFTNRFDRERTGKCTITEFKLGLGSFCQAVGYVLQRKEAQAISRRFFDGDASCAWSSFLRAYHEGAGESVACTRHSRLLCVSCVRHGRCEKAGCLCTKAHARRSEQLEFEMCKCGHPFEAHAVLRDSLPDEDGS-----DLHGSHVPSSEKLNSILAANVTVSGNDLPVHVEGCS 2780
++ T IQ++ RG Q R LFR RA+ +++R + FF+ARA+V+S++ AR++R E RKK V N W AA+ +QS RM R +R+E++ AV +QP+VRG+LAR A RERAL+ + W WLG N +YARFLPK Y I R ++ + P S T N++ K N + +SLV LE L GE+HFT +FDR++TG C+ EFK+GL SF + VGY LQ++EA I +R+FDGD CAW SFL +YH +S AC+RH RLLC C+R ++QL F+MC+CGH F+AH ++ G D G VP + L+++L+ ++ + D P++VEGCS
Sbjct: 1 MNATAIQKMARGMQARALFRRKRAQVMVQRQMLFFLARAYVASVKVARKIREEMRKKN-----------------------------------VSNGWG--------------------AAVAMQSTIRMFADRRRAQKMRREFDGAVRILQPLVRGLLARIAARRERALLGQVWGWLGTDTATANGIYARFLPKNKYLISRENVALQQFSASHPASGHIGTGNDNDLQKVNAEVRQATAWCKCMCCLYFVVRPSQGLEPTSSLVRSTLEVLPGERHFTEKFDRDKTGTCSKVEFKIGLESFLREVGYPLQKEEAALIVKRYFDGDGFCAWHSFLNSYHNAGSKSSACSRHGRLLCTLCIR------------------TKQLGFKMCECGHVFDAHELVVGGSGPVKGETVRKQDQRGRVVPQKQ-LSALLSKGLSKTVVDRPINVEGCS 377 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig124.1836.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig124.1836.1 >prot_F-serratus_M_contig124.1836.1 ID=prot_F-serratus_M_contig124.1836.1|Name=mRNA_F-serratus_M_contig124.1836.1|organism=Fucus serratus male|type=polypeptide|length=1142bp MTRHDDRGDNDGSDDIRFSGSNESRSLSTKSSGPGSSSDQSSGSGSSVGSback to top mRNA from alignment at F-serratus_M_contig124:720478..735243- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig124.1836.1 ID=mRNA_F-serratus_M_contig124.1836.1|Name=mRNA_F-serratus_M_contig124.1836.1|organism=Fucus serratus male|type=mRNA|length=14766bp|location=Sequence derived from alignment at F-serratus_M_contig124:720478..735243- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig124:720478..735243- >mRNA_F-serratus_M_contig124.1836.1 ID=mRNA_F-serratus_M_contig124.1836.1|Name=mRNA_F-serratus_M_contig124.1836.1|organism=Fucus serratus male|type=CDS|length=6852bp|location=Sequence derived from alignment at F-serratus_M_contig124:720478..735243- (Fucus serratus male)back to top |