mRNA_F-serratus_M_contig124.1834.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig124.1834.1
Unique NamemRNA_F-serratus_M_contig124.1834.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig124.1834.1 vs. uniprot
Match: A0A6H5JMR1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMR1_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 1.880e-34
Identity = 75/182 (41.21%), Postives = 107/182 (58.79%), Query Frame = 1 
Query:    4 AVFCGILEGGRFCGSRVKVAFFGFVIAAGLVISAFNEVDDLAALRGSEDGSFTTLHSAIIIILLMVLLAVLIYHFRLAWKNLPGAVLISGANRDKAAPKSPPL---NRFTEYFLASVMSIAWALVFGITTFEKGDQWEYHYILVAWVLSLIARFEDYVSIVWLALTTAVFLQGIGAYSLRFL 540
            A  CGIL G R+     K+ F   VIA+GL  SA    D    L     G  +   +A+ IILL+++  V  YH+ LAWK LPG  L  G    + A   PP    NR+ +Y  +  + + + ++F    + +GD+W+YHY+L+AW++SLIA F+DY+S+ WL +TT VFLQG+GAYS R L
Sbjct:   94 AFMCGILNGTRYHALSKKMYFPVLVIASGLATSALMNNDGFEGLH-DPGGDLSPAEAALSIILLILVALVFAYHYFLAWKFLPGGWLGWGMVSGQVAEPPPPSRAENRYLQYMASITVIMLYIVLFSAFAYSRGDEWDYHYVLLAWLMSLIAAFDDYISVAWLGITTGVFLQGVGAYSFRVL 274
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BLAST of mRNA_F-serratus_M_contig124.1834.1 vs. uniprot
Match: D7G1N8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1N8_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 3.380e-28
Identity = 57/133 (42.86%), Postives = 86/133 (64.66%), Query Frame = 1 
Query:  151 GSFTTLHSAIIIILLMVLLAVLIYHFRLAWKNLPGAVLISGANRDKAAPKSPPL---NRFTEYFLASVMSIAWALVFGITTFEKGDQWEYHYILVAWVLSLIARFEDYVSIVWLALTTAVFLQGIGAYSLRFL 540
            G  +   +A+ IILL+++  V  YH+ LAWK LPG  L  G    + A   PP    NR+ +Y  +  + + + ++F    + +GD+W+YHY+L+AW++SLIA F+DY+S+ WL +TT VFLQG+GAYS R L
Sbjct:   14 GELSPAEAALSIILLVLVALVFAYHYFLAWKFLPGGWLGWGMVSGQVAEPPPPSRAENRYLQYMASITVIMVYIVLFSAFAYSRGDEWDYHYVLLAWLMSLIAAFDDYISVAWLGITTGVFLQGVGAYSFRVL 146
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BLAST of mRNA_F-serratus_M_contig124.1834.1 vs. uniprot
Match: A0A6H5JIF9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JIF9_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 1.140e-27
Identity = 71/182 (39.01%), Postives = 98/182 (53.85%), Query Frame = 1 
Query:    4 AVFCGILEGGRFCGSRVKVAFFGFVIAAGLVISAFNEVDDLAALRGSEDGSFTTLHSAIIIILLMVLLAVLIYHFRLAWKNLPGAVLISGA---NRDKAAPKSPPLNRFTEYFLASVMSIAWALVFGITTFEKGDQWEYHYILVAWVLSLIARFEDYVSIVWLALTTAVFLQGIGAYSLRFL 540
            A  C  L+  RF     +      V+ +G+  SA  + D        EDG  T ++    ++++ V LA  +YHF +AW  LPGAV+ISG      D  AP     NRF  Y   +V+  A+  +       +GD W YHY L+AWV+SLIA F+D  S+VWL +TT  FLQG+GAYS +FL
Sbjct:   66 AFLCDTLDSERFHSLSKERYLPVVVVGSGITTSALTKNDGFVDTHEIEDGMTTAVNVVSTLLVIAVGLA-FVYHFFVAWTTLPGAVMISGGVSTPEDATAPVRSG-NRFARYMATAVLVAAFVALNAAFVHRRGDNWNYHYTLLAWVMSLIAIFDDPFSVVWLGVTTGAFLQGVGAYSFQFL 245
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BLAST of mRNA_F-serratus_M_contig124.1834.1 vs. uniprot
Match: D8LDF2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDF2_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 1.020e-24
Identity = 68/176 (38.64%), Postives = 98/176 (55.68%), Query Frame = 1 
Query:    1 QAVFCGILEGGRFCGSRVKVAFFGFVIAAGLVISAFNEVDDLAALRGSEDGSFTTLHSAIIIILLMVLLAVLIYHFRLAWKNLPGAVLISGANRDKAAPKSPPLNRFTEYFLASVMSIAWALVFGITTFEKGDQWEYHYILVAWVLSLIARFEDYVSIVWLALTTAVFLQGIGAYS 528
            QA FC I+E  RF     KV F   ++ A L +S  +  + L      E    TT   AI IILL++ + VL+ HF  AWK LPGA LISG    +   +   L+    Y  + ++ +A+ +++   +  + D W Y   L+AWVLSL A+F+ ++S+ WLA+TT VFLQGIG  S
Sbjct:   91 QAWFCEIMEERRFRDLASKVYFPLLMVGAALALSGLSRAESLRNSLQEERRDLTTFQVAIFIILLILTVVVLLLHFAEAWKVLPGAHLISGVGVPRVEVREDLLSI---YVASRMLILAYFILYAAFSVARDDGWGYQLYLLAWVLSLFAQFKSFISVFWLAVTTGVFLQGIGNQS 263
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig124.1834.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JMR1_9PHAE1.880e-3441.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1N8_ECTSI3.380e-2842.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JIF9_9PHAE1.140e-2739.01Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LDF2_ECTSI1.020e-2438.64Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig124contigF-serratus_M_contig124:698728..700642 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size1080
Cds size387
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig124.1834.1prot_F-serratus_M_contig124.1834.1Fucus serratus malepolypeptideF-serratus_M_contig124 699758..700144 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929165.6774864-UTR-F-serratus_M_contig124:698727..6988131622929165.6774864-UTR-F-serratus_M_contig124:698727..698813Fucus serratus maleUTRF-serratus_M_contig124 698728..698813 +
1690962731.6986222-UTR-F-serratus_M_contig124:698727..6988131690962731.6986222-UTR-F-serratus_M_contig124:698727..698813Fucus serratus maleUTRF-serratus_M_contig124 698728..698813 +
1622929165.7065396-UTR-F-serratus_M_contig124:699648..6997571622929165.7065396-UTR-F-serratus_M_contig124:699648..699757Fucus serratus maleUTRF-serratus_M_contig124 699649..699757 +
1690962731.7131126-UTR-F-serratus_M_contig124:699648..6997571690962731.7131126-UTR-F-serratus_M_contig124:699648..699757Fucus serratus maleUTRF-serratus_M_contig124 699649..699757 +
1622929165.7391884-UTR-F-serratus_M_contig124:700144..7006421622929165.7391884-UTR-F-serratus_M_contig124:700144..700642Fucus serratus maleUTRF-serratus_M_contig124 700145..700642 +
1690962731.7315826-UTR-F-serratus_M_contig124:700144..7006421690962731.7315826-UTR-F-serratus_M_contig124:700144..700642Fucus serratus maleUTRF-serratus_M_contig124 700145..700642 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929165.7210064-CDS-F-serratus_M_contig124:699757..7001441622929165.7210064-CDS-F-serratus_M_contig124:699757..700144Fucus serratus maleCDSF-serratus_M_contig124 699758..700144 +
1690962731.7234194-CDS-F-serratus_M_contig124:699757..7001441690962731.7234194-CDS-F-serratus_M_contig124:699757..700144Fucus serratus maleCDSF-serratus_M_contig124 699758..700144 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig124.1834.1

>prot_F-serratus_M_contig124.1834.1 ID=prot_F-serratus_M_contig124.1834.1|Name=mRNA_F-serratus_M_contig124.1834.1|organism=Fucus serratus male|type=polypeptide|length=129bp
MVLLAVLIYHFRLAWKNLPGAVLISGANRDKAAPKSPPLNRFTEYFLASV
MSIAWALVFGITTFEKGDQWEYHYILVAWVLSLIARFEDYVSIVWLALTT
AVFLQGIGAYSLRFLSPWRFGEDEFEDS*
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mRNA from alignment at F-serratus_M_contig124:698728..700642+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig124.1834.1 ID=mRNA_F-serratus_M_contig124.1834.1|Name=mRNA_F-serratus_M_contig124.1834.1|organism=Fucus serratus male|type=mRNA|length=1915bp|location=Sequence derived from alignment at F-serratus_M_contig124:698728..700642+ (Fucus serratus male)
CAGGCAGTCTTCTGTGGCATTCTCGAAGGCGGTCGATTCTGCGGATCGCG
TGTGAAGGTGGCGTTTTTCGGGTTCGTGATCGCGGCGTGAGTCATCACAG
CGGTTAGCGTTGACGATGATACCGTTAAAAAAAGGATAAACTCCAATTTG
ACTGCTGGAAGTAAAACTCATAGATTATGCTGGTAGTCTATGTAGATTGG
ATGTGGATGTTGATGTGTGTGCGAGTCCGATCGAACATAGACCCAATAGA
AACTTTTGAAGGGATGAACGTGTGGCATCGAACGTCCGTCGCGCTTAGCA
GGATAAGATAAGCGCAGCCCAGAACTATATGTAGAAAAACGCGATCAGAG
GAGTATATTACGTACAGTGGAGAGCGTTAGCCACATGTCCTAATAACAGT
AATTTTACCGTATGACTATGAAATAAATAGCACACCGCGAAGGGTAGGGT
TGCACTTGTTCGGTGCGAGGAAAAGGGGAGGGGGGGGGGAGGGAGACGAT
AGTGAGACAACTTTGACTTTTCTAAGTAAATAaagtcAAATAACAACCTT
GAGGGCGTACCATTTCCCTGCCGTCAATGATGTACGGTGATCTATTTGGT
TCGTCAAAGTTCGTTTAAAGTGTTTCCCGACACTTGACCGGCGTACTGTC
TAAAAACTAAAGGCCCCTTGAGATCATATCTCGACTGGCTGCCGGGTAGC
TGAACCATGCAAATAAATACGTCGCGAGAAGATATGCAGTGTGATGACAA
TAACCTGTCACGAAGCCACAACGGAACGATTTAACACCAATCCCGCGGAT
GATGGCCCATTTTTAAGCAGCACCCTTGTCGCAATCTTCTCTCCGTCAAT
CGCGTCTGACCACGCTCATCTGTCGCCCCTCTCCCACCGCTGACCCCAAC
CGACGCTTTAACATGCACCAGTGGGCTTGTAATCTCCGCCTTCAATGAGG
TGGACGACCTTGCCGCACTTCGTGGATCAGAAGATGGATCATTCACCACT
CTCCATTCGGCGATCATTATCATCCTTCTGATGGTTTTACTCGCGGTGCT
TATCTATCACTTCAGGCTTGCCTGGAAAAACTTGCCCGGCGCGGTGTTGA
TATCGGGAGCTAACCGAGACAAAGCTGCCCCGAAAAGTCCGCCGCTGAAC
AGGTTTACCGAGTACTTTCTCGCCAGCGTGATGTCCATTGCGTGGGCATT
AGTGTTCGGGATCACCACGTTCGAAAAGGGGGATCAGTGGGAGTACCACT
ACATCCTTGTGGCTTGGGTGTTATCGCTCATTGCTCGTTTTGAAGATTAC
GTCAGCATCGTTTGGTTAGCCCTCACCACGGCGGTTTTCTTGCAAGGAAT
CGGAGCATACTCCCTCCGGTTTTTGTCACCCTGGCGCTTCGGGGAAGATG
AGTTTGAAGATTCCTGACACGTTTCAATACGCCTTCACGTACAATGTAAA
CCCTCCGCGTAGTGAACTGCGCCACGGTCGTTTCTGGCGGCATAATGCCT
CGTATTTGCGTTGTGTTTTTCTGCCAACAACAACGTGCGCTGTACACACT
CGGCTTTCTTTGTTTGCGTAGGCGTGAAACATGCCATTTAGACTCCAGTC
TTAGCATGTAGAGAGGAAGGCGCAAATACCTGCCTTCCTCGAGGTTGGAA
AGTTGCGCGGCGATGTAACAACAGAGGACGGGAGCTGTCATTCTTGGAGG
AATGTTTTACGCAGCTAGATATTCATTTGCCCAAAGTCGATTCGGTAGTG
TGACGAATTCAGGGTTGAGAAGTTAGAAGAAGTAGTGTAAACAACTTTGC
CGAAGACACAATATAATAGCGCTTGCAGGTACAGTATGGCGAAGTTTATC
CCTCTCTGTAATAAACTTGAAAACTGTGCTGTATCTGTCATTTATGGAAA
GGGCCTGAAACCTTT
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Coding sequence (CDS) from alignment at F-serratus_M_contig124:698728..700642+

>mRNA_F-serratus_M_contig124.1834.1 ID=mRNA_F-serratus_M_contig124.1834.1|Name=mRNA_F-serratus_M_contig124.1834.1|organism=Fucus serratus male|type=CDS|length=774bp|location=Sequence derived from alignment at F-serratus_M_contig124:698728..700642+ (Fucus serratus male)
ATGGTTTTACTCGCGGTGCTTATCTATCACTTCAGGCTTGCCTGGAAAAA
CTTGCCCGGCGCGGTGTTGATATCGGGAGCTAACCGAGACAAAGCTGCCC
CGAAAAGTCCGCCGCTGAACAGGTTTACCGAGTACTTTCTCGCCAGCGTG
ATGTCCATTGCGTGGGCATTAGTGTTCGGGATCACCACGTTCGAAAAGGG
GGATCAGTGGGAGTACCACTACATCCTTGTGGCTTGGGTGTTATCGCTCA
TTGCTCGTTTTGAAGATTACGTCAGCATCGTTTGGTTAGCCCTCACCACG
GCGGTTTTCTTGCAAGGAATCGGAGCATACTCCCTCCGGTTTTTGTCACC
CTGGCGCTTCGGGGAAGATGAGTTTGAAGATTCCTGAATGGTTTTACTCG
CGGTGCTTATCTATCACTTCAGGCTTGCCTGGAAAAACTTGCCCGGCGCG
GTGTTGATATCGGGAGCTAACCGAGACAAAGCTGCCCCGAAAAGTCCGCC
GCTGAACAGGTTTACCGAGTACTTTCTCGCCAGCGTGATGTCCATTGCGT
GGGCATTAGTGTTCGGGATCACCACGTTCGAAAAGGGGGATCAGTGGGAG
TACCACTACATCCTTGTGGCTTGGGTGTTATCGCTCATTGCTCGTTTTGA
AGATTACGTCAGCATCGTTTGGTTAGCCCTCACCACGGCGGTTTTCTTGC
AAGGAATCGGAGCATACTCCCTCCGGTTTTTGTCACCCTGGCGCTTCGGG
GAAGATGAGTTTGAAGATTCCTGA
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