mRNA_F-serratus_M_contig124.1820.1 (mRNA) Fucus serratus male
|
Overview
Homology
BLAST of mRNA_F-serratus_M_contig124.1820.1 vs. uniprot
Match: A0A6H5KJ15_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ15_9PHAE) HSP 1 Score: 313 bits (802), Expect = 6.700e-86 Identity = 291/684 (42.54%), Postives = 369/684 (53.95%), Query Frame = 3
Query: 240 MADSPPVTRKRGKQNDGERTSARDRRY--------------GYNDWRDTV------ESERMLVDRRKKLLRAIPTSIPGVTGILKGQAKRDLREMGALVDMKVLDAEEIAPGGVMLTPRPLIPKANQLEAKQARLARWEKDPSLIEKDMADRREAVSRAEEKDLRMKAQHEAWERGYLSLRAHLMARRRPTASWSRTVEATSSSNTSVPAGGSSASSGSPVPVAGETEAALEEGDGRASAVGGGEGRPDGGNMKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASLRELERVVMDRARLEGEFDMTKVIDVLTDRSRQVMSARRELASLLAQQQQH-DQKQKCNGND---EMKRDLDKAHPGDMALLGRWHELLRSTDLVGEGRRP---PNGMDDA-----YHDLAEACG---------SDDTLLCKKSATLLIPRGLDLVPSMRAPRYPTLVQQLVHXXXXXXXXXXXXXXXXXTSAKETSRNRSNAIEMEVEERKSGAASTVVARVARAMECVPWIGIEGGGSAAGVQGAPTVVEAVDARREDPESAQTIAGVMSSIGDRVQWFPRGLPMEMAQSEGGYDERQSAHYVSKTSQALDRLKNLMKETAKRQEEMELRRRLKAKETLGLVRAVADHEKLRQEHLKRMKSLRKQLEKLETAKRSS 2168
M DSPPVTRKRG+ NDG+R RDRR +DWR+++ E E+ + D+RKKL+RAIPT+IPGV+ +++G A+ D+RE+ ALVDM+VL EE+APG V TPRP +PKANQLE K+AR+ARW+KDPS IEKDMA +REA+ +AE++D +++A+ AWER YL LRAHL A RRPTA+WS PA XXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXX +R E VM RA LEG+FDMTKV++VL SR MSAR+E +L+A+QQ D K G E +RD HPGD L RW ELLRS + G RP G+ +A D +A G D ++ L+P+GLDL+PSMRAPRY + V SG+ +T A+A+E VPW+ G GS+ V T +A +A + DRVQWFPRGLP E G D+R+SA + ++ S A+DRL ++ET+KRQ EME+RRR K E + LVRA ADHE++RQ+H +RMK+LR QLE LE KR S
Sbjct: 1 MVDSPPVTRKRGRHNDGDRAVTRDRRLVSIVRTIIIGVLWNAGSDWRESLRNARQEEMEKAIADKRKKLVRAIPTNIPGVSAVVRGDARSDIREIEALVDMQVLQPEEVAPGAVQATPRPPMPKANQLEPKRARMARWKKDPSEIEKDMAKQREALKKAEKEDEQLEAERHAWERWYLVLRAHLTAGRRPTATWS-------------PAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDGTGKAVNDGRYRXXXXXXXXXERVRGFEAEVMKRAGLEGKFDMTKVLNVLAGCSRDAMSARQEHTTLIAKQQSGGDSKAGAEGGGAEHEGERDEALPHPGDEGSLRRWEELLRSAHVHGVRWRPGVIEGGLTNAPPRGTLTDTDDASGPTPGTASLRGGDRQQQQQQREPLVPKGLDLLPSMRAPRYMPRPGEHVDI--------------------------------------SGSGATAKDG-AQAIEYVPWV--VGSGSSGRVMAGHT----------GGAAAPMLAA--GGVNDRVQWFPRGLPKESVTGMG-QDQRESALFNTRASMAIDRLGEQVEETSKRQAEMEIRRREKVGEAVCLVRAAADHERVRQDHFRRMKALRAQLESLEGTKRPS 608
BLAST of mRNA_F-serratus_M_contig124.1820.1 vs. uniprot
Match: D7G695_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G695_ECTSI) HSP 1 Score: 303 bits (775), Expect = 2.330e-82 Identity = 276/662 (41.69%), Postives = 352/662 (53.17%), Query Frame = 3
Query: 261 TRKRGKQNDGERTSARDRRYGYNDWRDTV------ESERMLVDRRKKLLRAIPTSIPGVTGILKGQAKRDLREMGALVDMKVLDAEEIAPGGVMLTPRPLIPKANQLEAKQARLARWEKDPSLIEKDMADRREAVSRAEEKDLRMKAQHEAWERGYLSLRAHLMARRRPTASWSRTVEATSSSNTSVPAGGSSASSGSPVPVAGETEAALEEGDGRASAVGGGEGRPDGGNMKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASLRELERVVMDRARLEGEFDMTKVIDVLTDRSRQVMSARRELASLLAQQQQHDQKQKCNGND-----EMKRDLDKAHPGDMALLGRWHELLRSTDLVG--------EG---RRPPNGM----DDAYHDLAEACGSDDTLLCKKSATL---LIPRGLDLVPSMRAPRYPTLVQQLVHXXXXXXXXXXXXXXXXXTSAKETSRNRSNAIEMEVEERKSGAASTVVARVARAMECVPWIGIEGGGSAAGVQGAPTVVEAVDARREDPESAQTIAGVMSSIGDRVQWFPRGLPMEMAQSEGGYDERQSAHYVSKTSQALDRLKNLMKETAKRQEEMELRRRLKAKETLGLVRAVADHEKLRQEHLKRMKSLRKQLEKLETAK 2159
+R RG+ NDG+R RDRR +DWR+++ E E+ + D+RKKL+RAIPT+IPGV+ +++G A+ D+RE+ ALVDM+VL EE+APG V TPRP +PKANQLE K+AR+ARW+KDPS +EKDMA +REA+ +AEE+D +++A+ +AWER YL LRAHL A RRPTA+WS P A XXXXXXXXXXXXXXXXXXXXXXXXXX XXXXX +R LE VM RA LEG+FDMTKV++VL SR M AR+E +L+A+QQ K D E +R+ HPGD L RW ELLRS + G EG PP G DDA S L+P+GLDL+PSMRAPRY +++ H SG+ +T A+A+E VPW+ G GS+ V T A T + DRVQWFPRGLP E G DER+SA + ++ S A+DRL ++ET+KRQ EME+RRR K E + LVRA ADHE++RQ+H +RMK+LR QL+ LE K
Sbjct: 39 SRARGRHNDGDRAVTRDRRNAGSDWRESLRNSRQEEMEKAVADKRKKLVRAIPTTIPGVSAVVRGDARSDIREIEALVDMQVLQPEEVAPGAVQATPRPPMPKANQLEPKRARMARWKKDPSEMEKDMAKQREALKKAEEEDEQLEAERDAWERWYLVLRAHLTAGRRPTATWS--------------------------PAAXXXXXXXXXXXXXXXXX---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDSTGKAVDNGRFRTGGEXXXXXERVRGLEVEVMKRAGLEGKFDMTKVLNVLAGCSRDAMFARQEHTTLVAKQQSGGDA-KAGAKDGGAEHEGERNDASPHPGDEGSLRRWEELLRSAHVNGGRWRPGVIEGGVTNAPPGGTSTDTDDASGPTPRTASSRXXXXXXXXXXXREPLVPKGLDLLPSMRAPRY--MLRPGEHADI------------------------------------SGSGATAEDE-AQAIEYVPWV--VGSGSSGRVMAGHT------------GGAATPMPAAGGVNDRVQWFPRGLPKESVTGMG-QDERESALFNTRASMAIDRLGEQVEETSKRQAEMEIRRREKVGEAVCLVRAAADHERVRQDHFRRMKALRAQLQSLEGTK 616 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig124.1820.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig124.1820.1 >prot_F-serratus_M_contig124.1820.1 ID=prot_F-serratus_M_contig124.1820.1|Name=mRNA_F-serratus_M_contig124.1820.1|organism=Fucus serratus male|type=polypeptide|length=1004bp MADSPPVTRKRGKQNDGERTSARDRRYGYNDWRDTVESERMLVDRRKKLLback to top mRNA from alignment at F-serratus_M_contig124:394577..409769- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig124.1820.1 ID=mRNA_F-serratus_M_contig124.1820.1|Name=mRNA_F-serratus_M_contig124.1820.1|organism=Fucus serratus male|type=mRNA|length=15193bp|location=Sequence derived from alignment at F-serratus_M_contig124:394577..409769- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig124:394577..409769- >mRNA_F-serratus_M_contig124.1820.1 ID=mRNA_F-serratus_M_contig124.1820.1|Name=mRNA_F-serratus_M_contig124.1820.1|organism=Fucus serratus male|type=CDS|length=6024bp|location=Sequence derived from alignment at F-serratus_M_contig124:394577..409769- (Fucus serratus male)back to top |