mRNA_F-serratus_M_contig1239.1808.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1239.1808.1
Unique NamemRNA_F-serratus_M_contig1239.1808.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1239.1808.1 vs. uniprot
Match: D7FN49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN49_ECTSI)

HSP 1 Score: 177 bits (450), Expect = 2.760e-50
Identity = 88/183 (48.09%), Postives = 124/183 (67.76%), Query Frame = 3 
Query:  153 ALVPISIDIDVDGVRLIDSFTWDLHQGQLSPEQFSKRMIEELGLSRSFILPVAQSISRQLLDFRSAMPSWRSDGTVAAAEEDLQLIDIDIRFRSIIYRDRMQWDVNCLNNSPEIFARCTVADLELPQEMEAPIAYSVHQQLCKHRMMTGSRSPTEDSRQISEDRLGPHISS-VHPVDQYEFKS 698
            ++V  ++D+++ GVR +DS  WD+HQ  LSP +FS+R   ELG+  SF+ P+AQSI +QL+++    P W  +GT+A A E++Q + ID+RFRS+I+RDR+QWDVNC  NSPE FAR TVADL LPQEME  IA + HQQ+ + RM   S +   +  Q   D  GP +SS ++    YE K+
Sbjct:   11 SVVCCNVDVEIGGVRFVDSVMWDIHQSSLSPLEFSRRTCAELGIGVSFVQPIAQSIGQQLIEYGRKNPMWAVEGTIAPAGENIQTVIIDVRFRSVIFRDRLQWDVNCPYNSPEQFARITVADLNLPQEMEPIIALTTHQQVSRFRMAAPSSTTNNEDAQFK-DVEGPCVSSALNSSSLYEVKA 192
[Close]
BLAST of mRNA_F-serratus_M_contig1239.1808.1 vs. uniprot
Match: A0A484E0B6_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E0B6_BRELC)

HSP 1 Score: 116 bits (291), Expect = 8.670e-25
Identity = 77/238 (32.35%), Postives = 116/238 (48.74%), Query Frame = 3 
Query:   54 LLIRNSTYTFESRPTSIGMPLPAQALLWDVRREALVPISIDIDVDGVRLIDSFTWDLHQGQLSPEQFSKRMIEELGLSRSFILPVAQSISRQLLDFRSAMPSWRSDGTVAAAEEDLQLIDIDIRFRSIIYRDRMQWDVNCLNNSPEIFARCTVADLELPQEMEAPIAYSVHQQLCKHRMMTGSRSPTEDSRQIS-----EDRL-----GPHISSVHPVDQYEFKSRDWSDHRPLSKPT 737
            +L + + Y +   PTS  +               L+PI +DIDV+G R IDSF+W+L++   + E F+  ++ +L L   F   +A S+  Q+   + A+P W      A   E L  I I++R    IY DR +WD+N  NNSPE FA+    DL L  E EA +A S+ +QL  +  +         +R  S      DRL     GP +  +   D  +F+  D+   RPLS+PT
Sbjct:  120 ILAQRTLYNYPKFPTSATL---------------LIPIRLDIDVEGYRYIDSFSWNLYEKDFTYETFAAALVRDLDLPNCFYERIATSLREQVQKAQKALP-WHE----AVTRESLHPIFINLRLNDAIYIDRFEWDLNDPNNSPECFAQVVCEDLGLSGEFEAQVALSIREQLYDYSRLIREGLKDRITRLPSVTAALRDRLDAEAWGPSVKYILADDIPQFEREDFKRMRPLSRPT 337
[Close]
BLAST of mRNA_F-serratus_M_contig1239.1808.1 vs. uniprot
Match: A0A0P1B619_PLAHL (Swi snf-related matrix-associated actin-dependent regulator of n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B619_PLAHL)

HSP 1 Score: 115 bits (287), Expect = 2.730e-24
Identity = 70/208 (33.65%), Postives = 109/208 (52.40%), Query Frame = 3 
Query:  144 RREALVPISIDIDVDGVRLIDSFTWDLHQGQLSPEQFSKRMIEELGLSRSFILPVAQSISRQLLDFRSAMPSWRSDGTVAAAEEDLQLIDIDIRFRSIIYRDRMQWDVNCLNNSPEIFARCTVADLELPQEMEAPIAYSVHQQLCKHRMMTGSRSPTEDSR-----QISEDRL-----GPHISSVHPVDQYEFKSRDWSDHRPLSKPT 737
            R E L+PI +DID++G R IDSF+W+LH+ + + E F+  ++ +L L   F   + +SI  Q+   ++ +P W      A   E L  I I++R    IY DR +WD+N  +NSPE FA+    DL L  E EA +A S+ +QL  +  +       + S+      +  DRL     GP +  +   D  + +  D+   RPLS+PT
Sbjct:  133 RDELLIPIRLDIDIEGYRFIDSFSWNLHEKEFTFETFAAALVRDLDLPNCFYQRITKSIQEQVHKAQAVLP-WHE----AVTGESLHPIYINLRLCDTIYTDRFEWDLNNTSNSPERFAQVVCEDLGLSGEFEAQVALSIREQLHDYSKLIREGFKDKVSQLPSVTAVFRDRLDVEVWGPSVKYILADDIPQLEREDFKRMRPLSRPT 335
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BLAST of mRNA_F-serratus_M_contig1239.1808.1 vs. uniprot
Match: A0A329S0R6_9STRA (Uncharacterized protein n=39 Tax=Phytophthora TaxID=4783 RepID=A0A329S0R6_9STRA)

HSP 1 Score: 113 bits (282), Expect = 1.320e-23
Identity = 69/208 (33.17%), Postives = 106/208 (50.96%), Query Frame = 3 
Query:  144 RREALVPISIDIDVDGVRLIDSFTWDLHQGQLSPEQFSKRMIEELGLSRSFILPVAQSISRQLLDFRSAMPSWRSDGTVAAAEEDLQLIDIDIRFRSIIYRDRMQWDVNCLNNSPEIFARCTVADLELPQEMEAPIAYSVHQQLCKHRMMTGSRSPTEDSR----------QISEDRLGPHISSVHPVDQYEFKSRDWSDHRPLSKPT 737
            R   L+PI +DIDV+G R IDSF+W+L++   + E F+  ++ +L L   F   +A+SI  Q+   + ++P W      A   E L  I I++R    IY DR +WD+N  NNSPE FA+    DL L  E EA +A S+ +QL  +  +         SR          ++  +  GP +  +   D  + +  D+   RPLS+PT
Sbjct:  131 RDTLLIPIRLDIDVEGYRYIDSFSWNLYEKDFTYETFAAALVRDLDLPNCFYKRIAKSIREQVEKAKKSLP-WNE----AVTGESLHPIFINLRLNDTIYIDRFEWDLNNPNNSPERFAQVVCEDLGLSGEFEAQVALSIREQLRDYSRLIREGLKDRVSRLPPVTAAFRDRLDAEAWGPSVKYILADDIPQLEREDFKRMRPLSRPT 333
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BLAST of mRNA_F-serratus_M_contig1239.1808.1 vs. uniprot
Match: V9F6J2_PHYPR (HTH cro/C1-type domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=V9F6J2_PHYPR)

HSP 1 Score: 110 bits (274), Expect = 3.500e-23
Identity = 67/204 (32.84%), Postives = 103/204 (50.49%), Query Frame = 3 
Query:  156 LVPISIDIDVDGVRLIDSFTWDLHQGQLSPEQFSKRMIEELGLSRSFILPVAQSISRQLLDFRSAMPSWRSDGTVAAAEEDLQLIDIDIRFRSIIYRDRMQWDVNCLNNSPEIFARCTVADLELPQEMEAPIAYSVHQQLCKHRMMTGSRSPTEDSR----------QISEDRLGPHISSVHPVDQYEFKSRDWSDHRPLSKPT 737
            L+PI +DIDV+G R IDSF+W+ ++   + E F+  ++ +L L   F   +A+SI  Q+   +  +P W      A   E L  I I++R    IY DR +WD+N  NNSPE FA+    DL L  E EA +A S+ +QL  +  +         SR          ++  +  GP +  +   D  + +  D+   RPLS+PT
Sbjct:  138 LIPIRLDIDVEGYRYIDSFSWNFYEKDFTYETFAAALVRDLDLPNCFYKRIAKSIQEQVEKAQKLLP-WSE----AVTGESLHPIFINLRLNDTIYIDRFEWDLNNPNNSPERFAQVVCEDLGLSGEFEAQVALSIREQLRDYSRLIREGLKDRVSRLPPVTAAFRDRLDAEAWGPSVKYILADDIPQLEREDFKRMRPLSRPT 336
[Close]
BLAST of mRNA_F-serratus_M_contig1239.1808.1 vs. uniprot
Match: A0A3M6VHY7_9STRA (HMG box domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VHY7_9STRA)

HSP 1 Score: 110 bits (274), Expect = 4.730e-23
Identity = 73/223 (32.74%), Postives = 112/223 (50.22%), Query Frame = 3 
Query:  120 AQALLWD-----VRREALVPISIDIDVDGVRLIDSFTWDLHQGQLSPEQFSKRMIEELGLSRSFILPVAQSISRQLLDFRSAMPSWRSDGTVAAAEEDLQLIDIDIRFRSIIYRDRMQWDVNCLNNSPEIFARCTVADLELPQEMEAPIAYSVHQQLCKHRMMTGSRSPTEDS-------RQISEDRL-----GPHISSVHPVDQYEFKSRDWSDHRPLSKPT 737
            AQ  L+D      R   L+PI +DID++G R IDSF+W+ ++   + E F+  ++ +L L   F   +A+SI  Q+   + ++P W      A   E L  I I++R    IY D+ +WD+N  NNSPE FAR    DL L  + EA +A ++ +QL  +  +   R   +DS            DRL     GP +  +   D  + +  D+   RPLS+PT
Sbjct:    4 AQRKLYDYPKFPARDTLLIPIGLDIDIEGYRYIDSFSWNFYEKDFTYETFAAALVRDLDLPDCFYKRIAKSIQEQVEKAQKSLP-WHE----AVTSESLHPIFINLRLNDTIYIDKFEWDLNDPNNSPEQFARVVCEDLGLSGQFEAQVALTIREQLRDYSRLI--REGLKDSVTRLPPVTTAFRDRLDTKVWGPSVKFILAEDIPQLEREDFKRMRPLSRPT 219
[Close]
BLAST of mRNA_F-serratus_M_contig1239.1808.1 vs. uniprot
Match: M4BLY5_HYAAE (HMG box domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BLY5_HYAAE)

HSP 1 Score: 105 bits (263), Expect = 4.900e-21
Identity = 79/274 (28.83%), Postives = 124/274 (45.26%), Query Frame = 3 
Query:   12 HDR*RAQNLATQHRLLIRNSTYTFESRPTSIGMPLPAQALLWDVRREALVPISIDIDVDGVRLIDSFTWDLHQGQLSPEQFSKRMIEELGLSRSFILPVAQSISRQLLDFRSAMPSWRSDGTVAAAEEDLQLIDIDIRFRSIIYRDRMQWDVNCLNNSPEIFARCTVADLELPQEMEAPIAYSVHQQL-----------------------CKHRMMT-GSRSPTEDSRQIS---EDRL-----GPHISSVHPVDQYEFKSRDWSDHRPLSKPT 737
            HD  +A     ++ +L +   Y++   PT               R   L+PI +DID++G R IDSF+W+L++   + E F+  ++ +L L   F   +A+SI  Q+   +   P W      A   E L  I I++R    IY DR +WD+N  NNSPE FAR    DL L  E EA +A  + +QL                       C+++++  G +S       +S    DRL     GP +  +   D  + +  D+   RPL++PT
Sbjct:  106 HDPLQAARSRKENLILAQRKPYSYPKFPT---------------RDTLLIPIRLDIDIEGYRYIDSFSWNLYEKDFTYETFAAALVRDLDLPDCFYKRIAKSIQEQVEKAQRLFP-WHE----AVTSESLHPIYINLRLNDTIYIDRFEWDLNDSNNSPEQFARVVCEDLGLHGEFEAQVALIIREQLRDYSRVSISSCIDTIRNIADAYSCRYQLIREGLKSRVSKLPPVSAAFRDRLETKVWGPSVKFILADDIPQLEREDFKRMRPLTRPT 359
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BLAST of mRNA_F-serratus_M_contig1239.1808.1 vs. uniprot
Match: A0A0W8CBZ9_PHYNI (Chromatin structure-remodeling complex protein BSH n=2 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8CBZ9_PHYNI)

HSP 1 Score: 102 bits (255), Expect = 2.380e-20
Identity = 71/227 (31.28%), Postives = 108/227 (47.58%), Query Frame = 3 
Query:  156 LVPISIDIDVDGVRLIDSFTWDLHQGQLSPEQFSKRMIEELGLSRSFILPVAQSISRQLLDFRSAMPSWRSDGTVAAAEEDLQLIDIDIRFRSIIYRDRMQWDVNCLNNSPEIFARCTVADLELPQEMEAPIAYSVHQQL---------CKHRMMTGSRSPTEDS-----RQISEDRL-------------------GPHISSVHPVDQYEFKSRDWSDHRPLSKPT 737
            L+PI +DIDV+G R IDSF+W+ ++   + E F+  ++ +L L   F   +A+SI  Q+   +  +P W      A   E L  I I++R    IY DR +WD+N  NNSPE FA+    DL L  E EA +A S+ +QL         C   M   S    +++     R+  +DR+                   GP +  +   D  + +  D+   RPLS+PT
Sbjct:  101 LIPIRLDIDVEGYRYIDSFSWNFYEKDFTYETFAAALVRDLDLPNCFYKRIAKSIQEQVEKAQKLLP-WSE----AVTGESLHPIFINLRLNDTIYIDRFEWDLNNPNNSPERFAQVVCEDLGLSGEFEAQVALSIREQLRDYSRVSKQCDLLMPEWSADVVDNAIEQLIREGLKDRVSRLPPVTAAFRDRLDAEAWGPSVKYILADDIPQLEREDFKRMRPLSRPT 322
[Close]
BLAST of mRNA_F-serratus_M_contig1239.1808.1 vs. uniprot
Match: A0A2D4BHJ2_PYTIN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin, putative (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BHJ2_PYTIN)

HSP 1 Score: 102 bits (254), Expect = 8.070e-20
Identity = 54/140 (38.57%), Postives = 82/140 (58.57%), Query Frame = 3 
Query:  156 LVPISIDIDVDGVRLIDSFTWDLHQGQLSPEQFSKRMIEELGLSRSFILPVAQSISRQLLDFRSAMPSWRSDGTVAAAEEDLQLIDIDIRFRSIIYRDRMQWDVNCLNNSPEIFARCTVADLELPQEMEAPIAYSVHQQL 575
            L+PI +D+DV+G R IDSF W+LH+   + E F+  ++++L L   F+  +A SI  Q+   + +MP W      A   E L  I I++R +  +Y DR +WD++   N PE+FA+    DL L  E EA IA S+ +QL
Sbjct:  123 LIPIRLDVDVEGHRFIDSFAWNLHEKDFTYETFAASLVQDLDLPECFLKRIAASIEAQVEKAKRSMP-WXD----AMNTESLHPIFINLRLQDTLYMDRFEWDLSDPRNDPELFAQTVCDDLGLSGEFEAQIALSIREQL 257
[Close]
BLAST of mRNA_F-serratus_M_contig1239.1808.1 vs. uniprot
Match: A0A097PLQ6_9LILI (Bushy growth protein (Fragment) n=1 Tax=Lilium brownii TaxID=82312 RepID=A0A097PLQ6_9LILI)

HSP 1 Score: 97.4 bits (241), Expect = 1.040e-19
Identity = 56/173 (32.37%), Postives = 96/173 (55.49%), Query Frame = 3 
Query:  150 EALVPISIDIDVDGVRLIDSFTWDLHQGQLSPEQFSKRMIEELGLSRSFILPVAQSISRQLLDFRSAMPSWRSDGTVAAAEEDLQLIDIDIRFRSIIYRDRMQWDVNCLNNSPEIFARCTVADLELPQ-EMEAPIAYSVHQQLCKHRMMTGSRSPTEDSRQISEDRLGPHISS 665
            E LVPI IDI+VDG R  D+FTW+ +        F+KR +++L L  +F+  ++QS+  QL +FRS       +G    ++E +  + +D+R  + I RD+  WD+N   + PE FAR    D+++   E+   IA+++ +QL  + +   S S   +SR   + R   +I++
Sbjct:    8 ENLVPIRIDIEVDGQRFKDAFTWNPNDPDSEVVNFAKRTVKDLKLPATFVTHISQSVQTQLAEFRSF------EGQEMPSKEKIVPLKLDLRVNNTIIRDQFLWDINNFESDPEEFARIFCKDMDISDPEIGPAIAFAIREQL--YELAVQSASTARESRLAKKGRRAENITN 172
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1239.1808.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN49_ECTSI2.760e-5048.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A484E0B6_BRELC8.670e-2532.35Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A0P1B619_PLAHL2.730e-2433.65Swi snf-related matrix-associated actin-dependent ... [more]
A0A329S0R6_9STRA1.320e-2333.17Uncharacterized protein n=39 Tax=Phytophthora TaxI... [more]
V9F6J2_PHYPR3.500e-2332.84HTH cro/C1-type domain-containing protein n=2 Tax=... [more]
A0A3M6VHY7_9STRA4.730e-2332.74HMG box domain-containing protein n=2 Tax=Peronosp... [more]
M4BLY5_HYAAE4.900e-2128.83HMG box domain-containing protein n=1 Tax=Hyaloper... [more]
A0A0W8CBZ9_PHYNI2.380e-2031.28Chromatin structure-remodeling complex protein BSH... [more]
A0A2D4BHJ2_PYTIN8.070e-2038.57SWI/SNF-related matrix-associated actin-dependent ... [more]
A0A097PLQ6_9LILI1.040e-1932.37Bushy growth protein (Fragment) n=1 Tax=Lilium bro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1239contigF-serratus_M_contig1239:89701..97257 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score179.1
Seed ortholog evalue2.2e-42
Seed eggNOG ortholog2880.D7FN49
KEGG koko:K09530,ko:K11648,ko:K12662
KEGG Pathwayko03040,ko04141,ko04714,ko05225,map03040,map04141,map04714,map05225
KEGG ModuleM00354
Hectar predicted targeting categoryother localisation
GOsGO:0006139,GO:0006259,GO:0006281,GO:0006325,GO:0006333,GO:0006337,GO:0006338,GO:0006355,GO:0006357,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008150,GO:0008152,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0016043,GO:0019219,GO:0019222,GO:0022411,GO:0031323,GO:0031326,GO:0031498,GO:0032984,GO:0032986,GO:0033554,GO:0034641,GO:0034728,GO:0043044,GO:0043170,GO:0043933,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051276,GO:0051716,GO:0060255,GO:0065007,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:1901360,GO:1903506,GO:2000112,GO:2001141
EggNOG free text desc.chromatin disassembly
EggNOG OGsKOG1649@1,KOG1649@2759
Ec32 ortholog descriptionSNF5
Ec32 orthologEc-06_008390.1
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01009,ko03021,ko03036,ko03041,ko03110,ko04131
Exons4
Model size1280
Cds size636
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1239.1808.1prot_F-serratus_M_contig1239.1808.1Fucus serratus malepolypeptideF-serratus_M_contig1239 89808..96720 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929161.2922027-UTR-F-serratus_M_contig1239:89700..898071622929161.2922027-UTR-F-serratus_M_contig1239:89700..89807Fucus serratus maleUTRF-serratus_M_contig1239 89701..89807 +
1690962729.4317808-UTR-F-serratus_M_contig1239:89700..898071690962729.4317808-UTR-F-serratus_M_contig1239:89700..89807Fucus serratus maleUTRF-serratus_M_contig1239 89701..89807 +
1622929161.3626218-UTR-F-serratus_M_contig1239:96720..972571622929161.3626218-UTR-F-serratus_M_contig1239:96720..97257Fucus serratus maleUTRF-serratus_M_contig1239 96721..97257 +
1690962729.4857516-UTR-F-serratus_M_contig1239:96720..972571690962729.4857516-UTR-F-serratus_M_contig1239:96720..97257Fucus serratus maleUTRF-serratus_M_contig1239 96721..97257 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929161.307203-CDS-F-serratus_M_contig1239:89807..899361622929161.307203-CDS-F-serratus_M_contig1239:89807..89936Fucus serratus maleCDSF-serratus_M_contig1239 89808..89936 +
1690962729.4419045-CDS-F-serratus_M_contig1239:89807..899361690962729.4419045-CDS-F-serratus_M_contig1239:89807..89936Fucus serratus maleCDSF-serratus_M_contig1239 89808..89936 +
1622929161.3215342-CDS-F-serratus_M_contig1239:93718..940151622929161.3215342-CDS-F-serratus_M_contig1239:93718..94015Fucus serratus maleCDSF-serratus_M_contig1239 93719..94015 +
1690962729.4501097-CDS-F-serratus_M_contig1239:93718..940151690962729.4501097-CDS-F-serratus_M_contig1239:93718..94015Fucus serratus maleCDSF-serratus_M_contig1239 93719..94015 +
1622929161.3368008-CDS-F-serratus_M_contig1239:96240..964251622929161.3368008-CDS-F-serratus_M_contig1239:96240..96425Fucus serratus maleCDSF-serratus_M_contig1239 96241..96425 +
1690962729.459576-CDS-F-serratus_M_contig1239:96240..964251690962729.459576-CDS-F-serratus_M_contig1239:96240..96425Fucus serratus maleCDSF-serratus_M_contig1239 96241..96425 +
1622929161.3523128-CDS-F-serratus_M_contig1239:96695..967201622929161.3523128-CDS-F-serratus_M_contig1239:96695..96720Fucus serratus maleCDSF-serratus_M_contig1239 96696..96720 +
1690962729.469437-CDS-F-serratus_M_contig1239:96695..967201690962729.469437-CDS-F-serratus_M_contig1239:96695..96720Fucus serratus maleCDSF-serratus_M_contig1239 96696..96720 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1239.1808.1

>prot_F-serratus_M_contig1239.1808.1 ID=prot_F-serratus_M_contig1239.1808.1|Name=mRNA_F-serratus_M_contig1239.1808.1|organism=Fucus serratus male|type=polypeptide|length=212bp
MPLPAQALLWDVRREALVPISIDIDVDGVRLIDSFTWDLHQGQLSPEQFS
KRMIEELGLSRSFILPVAQSISRQLLDFRSAMPSWRSDGTVAAAEEDLQL
IDIDIRFRSIIYRDRMQWDVNCLNNSPEIFARCTVADLELPQEMEAPIAY
SVHQQLCKHRMMTGSRSPTEDSRQISEDRLGPHISSVHPVDQYEFKSRDW
SDHRPLSKPTH*
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mRNA from alignment at F-serratus_M_contig1239:89701..97257+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1239.1808.1 ID=mRNA_F-serratus_M_contig1239.1808.1|Name=mRNA_F-serratus_M_contig1239.1808.1|organism=Fucus serratus male|type=mRNA|length=7557bp|location=Sequence derived from alignment at F-serratus_M_contig1239:89701..97257+ (Fucus serratus male)
CAAATACCAGGCACGACAGGTGACGAGCCCAAAACCTGGCAACACAACAC
AGGCTCTTGATACGTAACAGTACATATACCTTCGAGTCAAGGCCGACGTC
TATTGGCATGCCTCTTCCTGCCCAGGCGCTGTTGTGGGACGTCAGACGAG
AAGCTTTGGTACCGATCTCTATTGATATCGACGTGGACGGCGTCCGTCTC
ATAGATTCATTTACGTGGGATTTGCACCAGGGCCAGGTACTGTACCGGAT
TCACGCTGCCGCTGCTTTCCCGATCCCGTGCCCCTCTCCCTAAAACCGAA
ACCGCACGCACAGGCAGTAATAGAACACAATTTGCTATACAAACCGATTA
TGTATTTCACCTGTGATACGGCCCGTACAACTGGTACTACGCGCTAGTAC
TGTAGAGAATAACTCTCTGGTTTACTCCACCGACCGATATCCAAAATAAT
GTAAGTACCAGTATATTTTAGTCTAAGCAACGTCTATCAGTGTTCAGGGG
TGATACCAGGGATGTTTCAACTGCAGAGGCAAGTTTAGCAACGTCAACCT
CAACCTAAAGTCCATCCTGCTGTAACAAGTATTTTGAACTATCACCCGAA
CGTCGCTTACTTCTAGAGGTACATATTAGCGCTTGACCCACGACCTATTT
ACAACAACCACCGTATTGTGTGTACCGGATTATAAAAGTTTCACACGCAA
CACGATTTTCTTCAAACACATACTGGTATACGGTACATATTTTCAACATG
CCCATTTCATACCAATGGTGCTGTGGGGGAAAAGAAGCGCATAACGCCGA
TCGACCCGGTAGCTCAGAGGTACCTCGTAACCTTCTGACACGTTGGGACG
TGAGTTCGATCCCGGCAAACGGTATTTTTCTCACTAAAAACTAAAAACTA
AAATAAAAATGCCCAACGGGTGGAGAACTATTAATTCGTTAGAACGCAAA
ATTCGACTTCACGGTCGACGAGGGAAAGGAATGGCTGAATCCTTCTCGCG
ATAAAAATGAAGGCTCGCACCGCAGAAGGAAGGTGGACGAGGAATCCTGT
GTGACCTTCCTCCTGTGTGACCCCGGCTGGTACGTCCATTGATGTCCAGA
ATGGACGGGAAGAAAACACAAACACATGTTAATTGGTCCATGTCTACCGG
TCGCCCCGATAGCTCGGGGAACATATTAGCGCTTGACCCACGACCTATTT
ACAACAACCACCGTATTGTGTGTACCGGATTACAAAAGTTTCACACGCAA
CACGATTTTCTTCAAACACATTGATTGATTGATCTCACATAAGCTGATGT
AAAAAAACCCAGCCCATGGTCACAAGGTAGAAAACACCATTCGGAAGGAA
AGAACGTACGACGTACTCTCCATACAAAGAGAAAGCGGAAATGGTACAAG
AAATACTCGAAATAAGCGACATCTCCAAAAATAGAAACACGTGTGGCTAC
CGGGGCGCCTGCATTATTCGAAGGACGATTGAACGAAGGGCTGCGGCTTC
AACGAAAGCATAGAGACAAAAAACGAAGCAAAACAAAGCAAAACAAACGT
AACACCAGAGAAAAAACGTCATGGCATCTGCAAACAGAACGTCCGGAGGA
TACCAGTTCGCGCCACTTGTGGCTAGTCAACAAGGGCGAGCGAACCAGCA
CGAGCCCGCTTACTTTGGGCTATCCTCTTCTTGGTCCTTCCCGTCACGTT
CGGGCATACCACTGCGTGCCGTAATCCAGCCTTGACTTTCTCTGCAGCGA
TCCATTTTGCCATGAAACGTTCCGCCCCTTGTTCTGCCGTTCTGCGCCAT
TTCCCCTCGTCCTGGTCTGCAGTTGTCCACTGGTCGGCGTTGATGCCGAA
AGCTCTGAGATCGTCCAGGAAACACCCCATCCACTCTTTTTCCTGCCTCC
CCACACAGCCCGCGCCCCCCACCATTTCGCCGAACATCACGCACTTCGGC
AGTCTCGTATCCTCCATGCGCGCCACACATCATATTCATATACGGTACAT
ATTTTCAACATGCCCATTTCATACCGATGGTGCATGTGGGGGGAAAAAAG
CGCACAACGCCGATCGACCCGGTAGCTCAGAGGTACCTCGTAACCTTCTG
ACACGTTAGGACGTGAGTTCGATCCCGGCAAACGGTATTTTTCTCACTAA
AAACTAAAAACTAAAATATAAATGCCCAACGGGTGGAGAATGATTAATTC
GTTAGAACACAAAATTCGACGTCACGGTCGACGAGGGAAAGGAATGGCTG
AATCCTTCTCGCGATAAAAATAAAGGCTCGCGCCGCAGAAGGAAAGTGGA
CGAGGAATCCTGTGTGACCTTCCTCCTGTGTGACCCCGGCTGGTACGTCC
ATTGATGTCCAGAATAGATGGGAAGAAAATACGAACACATGTTAATTGGT
CCATGTCTACCGGTCGCCCCGGTAGCTCAGATGTACCTCGTAACCTTCTG
ACACGTTGGGACGTGAGTTCGATCCCGGCAAACGGGATTTTTCTCACTAA
AAACTACCATAAAAAACTAAAATGAAAATGCCCAACGGGTGGAGAACGAT
TGATTCATTAGTACACAAAATTCGATTTCACGGTCGACGAGGGAAAGGAA
TGGCTGACTCCTTCTCGCGAGAAAATTTAAGGCACGCACCGCAGAAGGAA
GGTGGATGAGAAATCCTGTGCGACCTTCCTCCTGTGTGACCCCGTCCGGT
ACGTCCATTGATGTCCAGAATGGATGGGAAGAAAACACAAACACACATGG
TGACCTGCCAAGCAGCACCCGTTTGGAACTCCCTTGAGGTTTACTGGCCC
TGTGCGGACGGACTCTTGGGAGTAAACGCCATCGGTACGCAATTGCGTGA
CCCGATAAACTCGGGACTGACCTGATGGCGTATAAATGGACGCTGCCGCG
GAAATCGGGAAGAGTCCCGTAAGTAAGCACCAGATTCAGCCTGAGTATGG
AGATGAGCAAGCTGACGCGGGACGAGACTGCCGAACCCGTCTCGCGAAAC
GCGCGAACGGGGACAGGGAAATATTCATTTTCCCTATTCAGCTGACCACG
AGCAGGATTGACAACCTCACCCGGTTGATCCTTACTCTTGCTTATATGTG
ATGATCATAGATATATAGATATACATAGCAGATTGGGCATCAACCGGTAT
GGTTGACAATCCTCCTCGTGGTCAGCTGAACAGGAAAAAAAAATTTCTCT
GTCCCCGTTCGCGCCTGAAAATTTGGTCTCGCGAGACAGGTTCAGCCGTC
TCGTCCCGCGTCAGACCGCTCATTCTCCTCACCCAGGCTGAATCTGGTGC
TTACTCGTGGATTCCTTTCCTTTCTCCCGCTTTCCGCGACGGCGTCCATC
TAGACAAGGTACCGTCAACCGCCATCATACATGATACATCACGCATCACA
GGGTCAGTCCCGAGTATATCAGGTGACGAAGTTGCGTACCGATGGCGTTC
CTGCCAAGAGTCCGCCGGCACAGGGCCAATAATCCTCAAGGTAGTTCGAG
TAACAAGGTGTGCTGCCTACTCAGGAAACCCGATGGACCAATATTTGTGC
GTCTCGCTTTTCCCACACCCTTCCCACACCACCGAACGGTAACAGGGAAA
TAAATATTCTATACTTTTTACTATACATTTTACCTTTTCAGCTGACCAGG
AGCAGAATTGGCAACCTTCACCGATTTATCCATACTCTGTTATAAATGAC
CCACATACATACATCGGTCGGATGTGAAGTATTGATCATATAGGTACAGT
AGTACATACGTGTGCCACACCCGCGGCTCGTCCCTATCTTTGGACAACAT
TAATACTTACGGTATGTACTGGAGGTGTAATAAGTAGGATAATAGGTAAT
AGGAACGCACTTGCTATGGGATCGATCTCATCTCAGGGTAGTACTGTAAC
ACCGTAGTGCAGATTTTCCTGCGTTGCCGCGATAAAGCTTTCACCATCCT
CTGTACAACTCGCTCTGCTGTACTCTCGTGTTCGACTTGCATCGTCTGCT
GTCGCACCCAATATTCAGCTGTCGCCGGAGCAGTTCTCGAAGCGAATGAT
CGAAGAGCTGGGTTTGTCTCGAAGTTTCATCCTCCCCGTGGCGCAGTCGA
TCAGCCGGCAATTGTTGGATTTTCGAAGTGCCATGCCTTCGTGGAGGTCA
GATGGGACGGTTGCCGCGGCGGAGGAAGATCTCCAGCTGATAGACATCGA
CATTCGCTTCAGATCAATCATCTACAGAGATCGCATGCAGTGGGACGTGA
ACTGCCTCAACAACAGCCCGGAGATCTTCGCAAGGTGCACAGTGGCGGAC
CTCGAGCTTCCGCAGGCACGTCTTATTAAGAGTTTGTGTATATTTTGTCA
CTTTCTGCCGAAGGGCGACCAACGTGCTAGATAACCAAGCCCGCCGCCTA
CTGCAAAGTTACCATATCCCGACTGTGGTCAATAAAGATCTATCAGTAAC
TCTTACCAGTTCCCATCTTCCTCCGAGCCAAAACCGGAAGTCGTTGCTCA
CAAAGCTCATCACGAACTCGCAGACTCTCGATGAATGTAACGCACTTACC
TATTAATAGTTCTATTCATCGATACGTGACACACATACAGTAAGTACCTT
GTCTACTGTTTTAGAGCTTTAGAGCTACGAAACACTGTTTTATACTATTA
TTACTAACACTTACGACTACTTACGTCGCCGTCGTCTTCAGTTGCAAGGA
TAAACTCTTTAAACTGACACTCTGAAAGTCCGAATCAATGAATCAACCAA
TCAATTAACTCTACGATTTTCGCCCGAAATTCAAACCCCCCAACTCGTAA
AACATCTCGACCAATATTGTTATATATCTAACATTTTGCGTACAACACAC
CCACTATTCATAGGTTGGGGCTTTCCTCCTGTCCCCATCTGATGATAAAC
TAGTTCTTTGTCAGGGTGTATTGTAGATGCGAGGAGATGTCAAGATCTGG
GCGATATAAGCCCTTTTGAGGGAGGGCGATGCAACCCCCCCCCCCTCTAA
CGTTCGGTTCTAGCGCAAATGGGGGTTTTCCAAACCTTGGGATGGAAAGT
TGGAAACTATTCCCCCAAGTTTGAACGTCATTTCTACAAGTGTTTCAGGC
GTGTCGGGCGGTTTGGAAAATTATTCGCTATACTTGTGTGTGTAGTGATT
TGAGCAGGAGTAGAAAATTGTCTACTTTCCCGGTCATGCAAATACAACCT
CCGATAACTTCAGCTCTAGAGCACAGGCTGACTCAAACTCTTGATTCCGA
GGGCCGCCAACTCACAGTGGCAACGGGCAAGCCAATTTTTGGGCGACAGT
GTGACCTGTGGCTGGTATAGTCACAGTCAGCGCGTGATAAACTGCCGGCA
AAATGGGATTCTTGAGGCGATCTGCTTTCCTTAAGTACTTGGCCACAATT
TTAAAGCTCCGTGGGCTATATACACATCGACAGCAGAGCTTCAGTTCCCT
TGGCAAAAAATATGCCTTTCAGCAGAGCCGATGCCGACTTTCAGGTCACG
GGATAACTTGTTGACTTATTGATACTTCTCCCATGCATCGACTAGGGCCT
TCGCGACCTTCCTAGAGGGTGTTCCTACACAGTGTAGTTAGGCGTGATTT
TCAATTTCGGAAACTCAATCCAAAACTTTGGAGCGACCTTTTTTCGGATA
TTGTCGCCTCCGTTCGATTCATACTTCGGAATTTTTGGCTCTCCGGAAGA
GTTTCTCCGGTGGAAAGTGGAAAATCTTTCTTTCCGAGTTTGGAATTTTT
TCATGTCGATAAGAATGGGCTTTAGAATCGACAAAGCTGAAGTTTTCCCC
AAGGTTAGAAACTTTTCAAAGCGTGGAAATCTCTAATGAGGCGTTCTACG
CATGAATACACCGTGCAGAAACACTTTCTAGGAATATTTTAAGGGCCTTC
TTGTTTGTAAGGCGGATTTTTTTTTCCGTGCGAAATACTCTCTATTGTCA
GGATGATGTACTTGTATCTTATGGGTGACAGAAGCGACCTTCAGCATTCA
GAGTTTTTTTTTTCATAAATGATATCGATTACAAAAATCCAGAAAATATA
CGGATGCGGGTGGCTATGATCGTCAGGAAACGGGGGGCTGGCTGCAAGAG
GCTTCAGCAGAAAAAAGTTGTCACGAGATTAAGTGTCGAGAGAAATATCC
CACAACAATGAACTGCCACCTACTTATCAGTCCACGCGCTACTCTGCAGC
CTATTATCCCACCTAAATGTTTTGACAGTAGTTCCCCCCCCCTGACTGGG
GGATGCTCAGAAGGTCCAGATGCGTTCAGATTTTTCTCTAAACCTTCTTG
AGCTGCTGGAGGCCGGAATGCTGCCCAGTGCGGCAGAACACCTGGACGCT
ATCAAATACCAGTATGTACTAGAGTTGTGTCATGTACCAGTATAGTATAG
TATAGTGCATACTGGTACCTGGTTTGTCAGAAGGTCTAGATGCGTTCATA
TTTTCGTGTACAGTACACACGGCGTGTGTTACTGGGTATTATCAAATTAC
ACCGCTGAACGTTGATCAACTGCCACTGCCACTGCCACAGGAGATGGAAG
CGCCCATCGCGTACAGCGTGCACCAGCAGTTATGCAAGCACCGGATGATG
ACGGGATCAAGATCTCCTACAGAAGATAGTCGTCAGATCAGTGAAGATCG
CCTGGGTCCACACATCTCGTCAGTCCATCCCGTCGATCAGTATGAGTTCA
AATCGAGAGACTGGAGTGACCACAGGTAGGCAAGCTGCTTGCTTTAGTGG
GTGGGTGGGTGGATACCTTAACGAGACATGCGTGTTTATCCTTCCTTATG
TTTTGTCACCAAAGTAGACAGCTGGCTCCAAGTGACCTGACCTTCTTTTG
TTCTCCTCATAACCTGACCTTCCTTTGTTCTTCTCGTAACCTGACCTTCT
TTTGTTCTCCTCGCCGTAACCGTGTGCACTGTTCTACTGCTGCTCTATCG
TGGCCACATTCCAAATGTGTTGCGTGGTTTCTCGCGACACGACAGACCGT
TGTCAAAACCAACCCACTAGCCCTAAATATATAAAAAAAAGGAGCAGGCC
AACAGCGGAGGCGGCACGAGCTTTCTATTCGATGGCGAAAACGACATCGT
CAAAGATTAGGTTTGGATAGCTCGCGGGGTCTTCGTATAATACACGCTCC
GGAGCGAGCCATTGTGGAGTAAGGGAGCGTCCGCTTGGCATCTTCGTAAC
GTGTGGACTGATATCTCGTCATGTAGGACTGTAATTTTTTACTATTTGTC
GTGTCTCTATTTCAATCTCTCAGATGTAGAGCACGTTCGTAGTTGTCAAT
GCGTCCGCACGTTAATTAATACTGTATTACAGTTTTACCTGAAACGTGGG
AACTGCGATTACACCAGAGCCAGAGCATGTGCATGCTGCATGTGCACGTT
GCGCATCGTCGAATCGAAGGTGTAAGGGGTATGGTGTAAGCAGGCCTGGG
GACCGCGCGTATTCGTCGGTAAAAACAGCAAAATGATGTACCTGTACAGT
ATTAATATTCATTTTATTACTAATACTACTGGAAGGATATCGCGAGCTTC
GAGTGGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1239:89701..97257+

>mRNA_F-serratus_M_contig1239.1808.1 ID=mRNA_F-serratus_M_contig1239.1808.1|Name=mRNA_F-serratus_M_contig1239.1808.1|organism=Fucus serratus male|type=CDS|length=1272bp|location=Sequence derived from alignment at F-serratus_M_contig1239:89701..97257+ (Fucus serratus male)
ATGCCTCTTCCTGCCCAGGCGCTGTTGTGGGACGTCAGACGAGAAGCTTT
GGTACCGATCTCTATTGATATCGACGTGGACGGCGTCCGTCTCATAGATT
CATTTACGTGGGATTTGCACCAGGGCCAGATGCCTCTTCCTGCCCAGGCG
CTGTTGTGGGACGTCAGACGAGAAGCTTTGGTACCGATCTCTATTGATAT
CGACGTGGACGGCGTCCGTCTCATAGATTCATTTACGTGGGATTTGCACC
AGGGCCAGCTGTCGCCGGAGCAGTTCTCGAAGCGAATGATCGAAGAGCTG
GGTTTGTCTCGAAGTTTCATCCTCCCCGTGGCGCAGTCGATCAGCCGGCA
ATTGTTGGATTTTCGAAGTGCCATGCCTTCGTGGAGGTCAGATGGGACGG
TTGCCGCGGCGGAGGAAGATCTCCAGCTGATAGACATCGACATTCGCTTC
AGATCAATCATCTACAGAGATCGCATGCAGTGGGACGTGAACTGCCTCAA
CAACAGCCCGGAGATCTTCGCAAGGTGCACAGTGGCGGACCTCGAGCTTC
CGCAGCTGTCGCCGGAGCAGTTCTCGAAGCGAATGATCGAAGAGCTGGGT
TTGTCTCGAAGTTTCATCCTCCCCGTGGCGCAGTCGATCAGCCGGCAATT
GTTGGATTTTCGAAGTGCCATGCCTTCGTGGAGGTCAGATGGGACGGTTG
CCGCGGCGGAGGAAGATCTCCAGCTGATAGACATCGACATTCGCTTCAGA
TCAATCATCTACAGAGATCGCATGCAGTGGGACGTGAACTGCCTCAACAA
CAGCCCGGAGATCTTCGCAAGGTGCACAGTGGCGGACCTCGAGCTTCCGC
AGGAGATGGAAGCGCCCATCGCGTACAGCGTGCACCAGCAGTTATGCAAG
CACCGGATGATGACGGGATCAAGATCTCCTACAGAAGATAGTCGTCAGAT
CAGTGAAGATCGCCTGGGTCCACACATCTCGTCAGTCCATCCCGTCGATC
AGTATGAGTTCAAATCGAGAGACTGGAGTGACCACAGGAGATGGAAGCGC
CCATCGCGTACAGCGTGCACCAGCAGTTATGCAAGCACCGGATGATGACG
GGATCAAGATCTCCTACAGAAGATAGTCGTCAGATCAGTGAAGATCGCCT
GGGTCCACACATCTCGTCAGTCCATCCCGTCGATCAGTATGAGTTCAAAT
CGAGAGACTGGAGTGACCACAGACCGTTGTCAAAACCAACCCACTAGACC
GTTGTCAAAACCAACCCACTAG
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