mRNA_F-serratus_M_contig1236.1787.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1236.1787.1
Unique NamemRNA_F-serratus_M_contig1236.1787.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1236.1787.1 vs. uniprot
Match: A0A6H5KF55_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF55_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 3.930e-36
Identity = 72/124 (58.06%), Postives = 89/124 (71.77%), Query Frame = 1
Query:   19 EATTYPTSYYEYKLAGVVVHSGTSDYGHYYSFAKQRKLQGGGDTGPDSWFSFNDTKVAPFDPANIPATCFGGPTASPDGRGKVPREWSAYMLIYEREYVLPDPVPAPASVSTSNPEGSAPPPGG 390
            E   +P SYYEYKLAGV+VH GT+D GHYYS+ K+R  QGGGD  P SWF FND  V PFDP ++  TC GG + SP GRG  P+++SAYMLIYERE++LP+P  APA+ S +    +AP  GG
Sbjct:   44 EGEVFPDSYYEYKLAGVLVHMGTADSGHYYSYIKRRDTQGGGDI-PASWFCFNDASVTPFDPDSLGMTCHGGYSISPTGRGHTPKQFSAYMLIYEREFILPNPA-APATPSPTADAAAAPHDGG 165          
BLAST of mRNA_F-serratus_M_contig1236.1787.1 vs. uniprot
Match: D7FK75_ECTSI (Ubiquitin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK75_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 7.420e-36
Identity = 71/124 (57.26%), Postives = 88/124 (70.97%), Query Frame = 1
Query:   19 EATTYPTSYYEYKLAGVVVHSGTSDYGHYYSFAKQRKLQGGGDTGPDSWFSFNDTKVAPFDPANIPATCFGGPTASPDGRGKVPREWSAYMLIYEREYVLPDPVPAPASVSTSNPEGSAPPPGG 390
            E   +P SYYEYKLAGV+VH GT+D GHYYS+ K+R  QGGGD  P SWF FND  V PFDP ++  TC GG + SP GRG  P+++SAYMLIYERE++LP+P P PA+ S +    + P  GG
Sbjct: 1721 EGEAFPDSYYEYKLAGVLVHMGTADSGHYYSYIKRRDTQGGGDI-PASWFCFNDASVTPFDPDSLGMTCHGGYSISPTGRGHTPKQFSAYMLIYEREFILPNPAP-PATPSPTADAAAVPHDGG 1842          
BLAST of mRNA_F-serratus_M_contig1236.1787.1 vs. uniprot
Match: A0A7S1IJ16_9EUGL (Ubiquitin carboxyl-terminal hydrolase (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IJ16_9EUGL)

HSP 1 Score: 99.4 bits (246), Expect = 2.020e-21
Identity = 53/109 (48.62%), Postives = 69/109 (63.30%), Query Frame = 1
Query:   31 YPTSYYEYKLAGVVVHSGTSDYGHYYSFAKQRKLQGGGDTGPDSWFSFNDTKVAPFDPANIPATCFGG--------PTASPDGRGKVPREWSAYMLIYEREYVLPDPVP 333
            +P SYYEYKLAGV+VH+GT+D GHYYSF K+R      DT  + W+ FND +V PF+P +I  TCFGG        P         VP+ +SAY+L+YER  +  +PVP
Sbjct:  312 HPPSYYEYKLAGVLVHAGTADSGHYYSFIKER------DTDEEKWYHFNDMQVEPFNPQDIQRTCFGGTEVLSQWDPVQQKHISVAVPKPYSAYLLLYER--IQQEPVP 412          
BLAST of mRNA_F-serratus_M_contig1236.1787.1 vs. uniprot
Match: A0A0L0DIA6_THETB (USP domain-containing protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DIA6_THETB)

HSP 1 Score: 93.6 bits (231), Expect = 2.530e-19
Identity = 53/112 (47.32%), Postives = 70/112 (62.50%), Query Frame = 1
Query:   25 TTYPTSYYEYKLAGVVVHSGTSDYGHYYSFAKQRKLQGGGDTGPDSWFSFNDTKVAPFDPANIPATCFGGP--TAS--PDGRGKVP----REWSAYMLIYER--EYVLPDPV 330
            T  P  YY+Y+LAG++VH GT+D GHYY+F K+R + G        WF FNDT V PF+P++IP   FGG   T S  P+ R  VP    + +SAYML+YER  +Y   +PV
Sbjct:   65 TFRPDDYYQYELAGIIVHMGTADSGHYYTFVKERTVDG-------EWFRFNDTNVDPFNPSDIPVAAFGGTEYTTSWDPNLRKNVPHVTQKSYSAYMLLYERSAKYECAEPV 169          
BLAST of mRNA_F-serratus_M_contig1236.1787.1 vs. uniprot
Match: A0A7S1BNC6_9STRA (Hypothetical protein n=3 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BNC6_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 6.680e-19
Identity = 45/99 (45.45%), Postives = 62/99 (62.63%), Query Frame = 1
Query:   43 YYEYKLAGVVVHSGTSDYGHYYSFAKQRKLQGGGDTGPDSWFSFNDTKVAPFDPANIPATCFGG--------PTASPDGRGKVPREWSAYMLIYEREYV 315
            YY++ L GV+VH+GT+D GHYYSF K+R          + W+ FND  V PFDP+ +P+TCFGG        P +      + P+++SAY+LIYER YV
Sbjct: 2927 YYQFNLKGVLVHTGTADSGHYYSFIKERHKG-------EEWYCFNDGSVTPFDPSTMPSTCFGGTKVSHKFDPLSQKMIPNETPKQYSAYLLIYERNYV 3018          
BLAST of mRNA_F-serratus_M_contig1236.1787.1 vs. uniprot
Match: L8GPA8_ACACA (Ubiquitinyl hydrolase 1 n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GPA8_ACACA)

HSP 1 Score: 91.3 bits (225), Expect = 1.680e-18
Identity = 48/97 (49.48%), Postives = 63/97 (64.95%), Query Frame = 1
Query:   40 SYYEYKLAGVVVHSGTSDYGHYYSFAKQRKLQGGGDTGPDSWFSFNDTKVAPFDPANIPATCFGGP---TASPDGRGKVPREW-----SAYMLIYER 306
            SYY+Y+LAG++VH+GT+DYGHYYSF ++R  +  G+     W+ FNDT V PFDP  IP TCFGG    T   +  GK   +W     +AYML Y+R
Sbjct: 1645 SYYKYELAGILVHTGTADYGHYYSFIRERLPKVAGEA--CKWYQFNDTLVEPFDPEEIPKTCFGGADTVTEWDEVAGKHVPKWRAKTYNAYMLFYQR 1739          
BLAST of mRNA_F-serratus_M_contig1236.1787.1 vs. uniprot
Match: A0A6B2KWA6_9EUKA (USP domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2KWA6_9EUKA)

HSP 1 Score: 89.4 bits (220), Expect = 7.650e-18
Identity = 47/107 (43.93%), Postives = 66/107 (61.68%), Query Frame = 1
Query:   31 YPTSYYEYKLAGVVVHSGTSDYGHYYSFAKQRKLQGGGDTGPDSWFSFNDTKVAPFDPANIPATCFGGPTASPDGRGK--VPREWSAYMLIYEREY----VLPDPVP 333
            YP S+Y+Y L G++VH+GT++ GHYYSF K        D+  + WF FNDT++ PFD  +IP  CFGG      GR    V + ++AY+LIYER      V+ +P+P
Sbjct:  289 YPLSHYDYDLTGILVHNGTTESGHYYSFIK--------DSQSNQWFQFNDTQITPFDANDIPDQCFGGVETQRVGRTTRTVQKTYNAYLLIYERSCPEKPVVENPIP 387          
BLAST of mRNA_F-serratus_M_contig1236.1787.1 vs. uniprot
Match: A0A7S3ANS1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3ANS1_9EUKA)

HSP 1 Score: 87.8 bits (216), Expect = 1.300e-17
Identity = 59/141 (41.84%), Postives = 73/141 (51.77%), Query Frame = 1
Query:    4 AEGLAEATTYPTSY-------YEYKLAGVVVHSGTSDYGHYYSFAKQRKLQ--GGGDTGPDSWFSFNDTKVAPFDPANIPATCFGG--PTASPDG------RGKVPREWSAYMLIYEREYVLPDPVPAPASVSTSNPEGSA 375
            AEG AEA+             Y Y+LAGV+VHSGTSD GHYYSF ++R+ Q  GG       W  FNDT + PFD  +I   C+GG  P    D       +   P++ SAYML YER  V P    AP + +   P  SA
Sbjct:  184 AEGAAEASDASADLEAATAAGYVYQLAGVLVHSGTSDSGHYYSFIRERRCQPPGGAGQSGSGWLHFNDTLIEPFDERDIAKCCYGGVEPLTQWDAEMAKHVQRNAPKQHSAYMLFYER--VQPTAASAPVAATEPAPGSSA 322          
BLAST of mRNA_F-serratus_M_contig1236.1787.1 vs. uniprot
Match: A0A2P6NCG0_9EUKA (USP domain-containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NCG0_9EUKA)

HSP 1 Score: 88.2 bits (217), Expect = 1.990e-17
Identity = 52/117 (44.44%), Postives = 66/117 (56.41%), Query Frame = 1
Query:    4 AEG--LAEATTYPTSYYEYKLAGVVVHSGTSDYGHYYSFAKQRKLQGG------GDTGPDSWFSFNDTKVAPFDPANIPATCFGGPTASPDG--------RGKVPREWSAYMLIYER 306
            AEG  L+EA T+P +YY+Y+L GV+VHSG++D GHYYS+ K+R  Q        G+   D WF +ND  V  FDP +IP  CFGG               R    R  SAYML Y+R
Sbjct: 1892 AEGRSLSEAETFPETYYQYQLMGVLVHSGSADAGHYYSYIKERGGQANSLRSSVGEDQGDRWFEYNDKNVTLFDPKDIPTECFGGTQQVTHWDERTRSYVRKTYDRVRSAYMLFYDR 2008          
BLAST of mRNA_F-serratus_M_contig1236.1787.1 vs. uniprot
Match: A0A2R5GHV8_9STRA (Ubiquitin carboxyl-terminal hydrolase 34 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GHV8_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 2.740e-17
Identity = 51/99 (51.52%), Postives = 63/99 (63.64%), Query Frame = 1
Query:   34 PTSYYEYKLAGVVVHSGTSDYGHYYSFAKQRKLQGGGDTGPDSWFSFNDTKVAPFDPANIPATCFGGP-TASPDG-RGKVPRE------WSAYMLIYER 306
            P SYYEY+L G++VH+GT+D GHYYSF K+R      D     WF FND +V+ FDPA IP T FGG   A  DG + + P +      +SAYMLIYER
Sbjct: 2882 PDSYYEYELVGILVHTGTADSGHYYSFIKERVPTA--DRTSCEWFHFNDEQVSHFDPATIPETSFGGAKNAQWDGNQQRAPSQSWSNKPYSAYMLIYER 2978          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1236.1787.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KF55_9PHAE3.930e-3658.06USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FK75_ECTSI7.420e-3657.26Ubiquitin domain-containing protein n=1 Tax=Ectoca... [more]
A0A7S1IJ16_9EUGL2.020e-2148.62Ubiquitin carboxyl-terminal hydrolase (Fragment) n... [more]
A0A0L0DIA6_THETB2.530e-1947.32USP domain-containing protein n=1 Tax=Thecamonas t... [more]
A0A7S1BNC6_9STRA6.680e-1945.45Hypothetical protein n=3 Tax=Corethron hystrix Tax... [more]
L8GPA8_ACACA1.680e-1849.48Ubiquitinyl hydrolase 1 n=1 Tax=Acanthamoeba caste... [more]
A0A6B2KWA6_9EUKA7.650e-1843.93USP domain-containing protein n=1 Tax=Arcella inte... [more]
A0A7S3ANS1_9EUKA1.300e-1741.84Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A2P6NCG0_9EUKA1.990e-1744.44USP domain-containing protein n=1 Tax=Planoprotost... [more]
A0A2R5GHV8_9STRA2.740e-1751.52Ubiquitin carboxyl-terminal hydrolase 34 n=1 Tax=H... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1236contigF-serratus_M_contig1236:31313..32183 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score142.1
Seed ortholog evalue2.1e-31
Seed eggNOG ortholog2880.D7FK75
KEGG koko:K11840,ko:K11853,ko:K11869
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsCOG5077@1,KOG1866@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Exons2
Model size451
Cds size450
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929156.024336-CDS-F-serratus_M_contig1236:31312..314471622929156.024336-CDS-F-serratus_M_contig1236:31312..31447Fucus serratus maleCDSF-serratus_M_contig1236 31313..31447 +
1690962727.3262537-CDS-F-serratus_M_contig1236:31312..314471690962727.3262537-CDS-F-serratus_M_contig1236:31312..31447Fucus serratus maleCDSF-serratus_M_contig1236 31313..31447 +
1622929156.0448112-CDS-F-serratus_M_contig1236:31867..321821622929156.0448112-CDS-F-serratus_M_contig1236:31867..32182Fucus serratus maleCDSF-serratus_M_contig1236 31868..32182 +
1690962727.3384087-CDS-F-serratus_M_contig1236:31867..321821690962727.3384087-CDS-F-serratus_M_contig1236:31867..32182Fucus serratus maleCDSF-serratus_M_contig1236 31868..32182 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1236.1787.1prot_F-serratus_M_contig1236.1787.1Fucus serratus malepolypeptideF-serratus_M_contig1236 31313..32182 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1236.1787.1

>prot_F-serratus_M_contig1236.1787.1 ID=prot_F-serratus_M_contig1236.1787.1|Name=mRNA_F-serratus_M_contig1236.1787.1|organism=Fucus serratus male|type=polypeptide|length=150bp
RAEGLAEATTYPTSYYEYKLAGVVVHSGTSDYGHYYSFAKQRKLQGGGDT
GPDSWFSFNDTKVAPFDPANIPATCFGGPTASPDGRGKVPREWSAYMLIY
EREYVLPDPVPAPASVSTSNPEGSAPPPGGNCLAAKGGLSRDSKADATPL
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mRNA from alignment at F-serratus_M_contig1236:31313..32183+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1236.1787.1 ID=mRNA_F-serratus_M_contig1236.1787.1|Name=mRNA_F-serratus_M_contig1236.1787.1|organism=Fucus serratus male|type=mRNA|length=871bp|location=Sequence derived from alignment at F-serratus_M_contig1236:31313..32183+ (Fucus serratus male)
CGGGCAGAGGGCCTGGCCGAGGCTACAACCTATCCCACGAGCTACTACGA GTACAAGCTCGCGGGGGTTGTAGTTCACTCAGGGACCTCCGACTATGGCC ATTATTACAGTTTCGCCAAGCAACGAAAGTTGCAGGTACAACTGTAGTAC TATCAATAGTACCTGGTACCTGGTACTAAATATCAAATACACTAATTATA GTATAGCTGTAGTATAGTATAGTATAGTATAGTATAGTACAGTACTGTTG GTGTTCTATACCTGCCATGCAGCAAACAGTCACGTTCACGGAGGGCATAC TGTAGCTCCCGTCATGCCGTGCCTTCCATATCCACATGCACATCGATCAA TAGTCCAAGCTGGTAATGCTTGATAGCGCTCAACCATGGGGGGTGGGATG AATGGTTTGGCCGTCGAATCAGGCGTCCTTTGCAGTGCCAAGCGGTTCTA GGGTACGTTTCGCTTGACTTCCTTGCCGTTTGCTGTTATCCTATCCCATC CCTTCCATCCTATATTGTCTTCTCTGGGTGGGTGGGGGGTTTTTGTTTAT GCTAGGGAGGCGGCGACACTGGGCCAGACTCATGGTTTTCCTTTAACGAC ACGAAGGTCGCCCCCTTCGACCCGGCGAATATACCAGCAACCTGTTTTGG AGGTCCTACAGCGAGTCCTGATGGCCGAGGGAAGGTGCCTCGAGAGTGGT CGGCCTACATGCTCATTTACGAGCGCGAGTACGTGCTTCCGGACCCTGTG CCCGCGCCCGCGTCGGTTTCAACCTCGAACCCGGAAGGTTCCGCACCTCC GCCTGGTGGAAACTGTCTCGCGGCGAAAGGGGGGCTTTCGCGGGATTCGA AGGCTGACGCCACGCCGTTGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1236:31313..32183+

>mRNA_F-serratus_M_contig1236.1787.1 ID=mRNA_F-serratus_M_contig1236.1787.1|Name=mRNA_F-serratus_M_contig1236.1787.1|organism=Fucus serratus male|type=CDS|length=900bp|location=Sequence derived from alignment at F-serratus_M_contig1236:31313..32183+ (Fucus serratus male)
CGGGCAGAGGGCCTGGCCGAGGCTACAACCTATCCCACGAGCTACTACGA
GTACAAGCTCGCGGGGGTTGTAGTTCACTCAGGGACCTCCGACTATGGCC
ATTATTACAGTTTCGCCAAGCAACGAAAGTTGCAGCGGGCAGAGGGCCTG
GCCGAGGCTACAACCTATCCCACGAGCTACTACGAGTACAAGCTCGCGGG
GGTTGTAGTTCACTCAGGGACCTCCGACTATGGCCATTATTACAGTTTCG
CCAAGCAACGAAAGTTGCAGGGAGGCGGCGACACTGGGCCAGACTCATGG
TTTTCCTTTAACGACACGAAGGTCGCCCCCTTCGACCCGGCGAATATACC
AGCAACCTGTTTTGGAGGTCCTACAGCGAGTCCTGATGGCCGAGGGAAGG
TGCCTCGAGAGTGGTCGGCCTACATGCTCATTTACGAGCGCGAGTACGTG
CTTCCGGACCCTGTGCCCGCGCCCGCGTCGGTTTCAACCTCGAACCCGGA
AGGTTCCGCACCTCCGCCTGGTGGAAACTGTCTCGCGGCGAAAGGGGGGC
TTTCGCGGGATTCGAAGGCTGACGCCACGCCGTTGGGAGGCGGCGACACT
GGGCCAGACTCATGGTTTTCCTTTAACGACACGAAGGTCGCCCCCTTCGA
CCCGGCGAATATACCAGCAACCTGTTTTGGAGGTCCTACAGCGAGTCCTG
ATGGCCGAGGGAAGGTGCCTCGAGAGTGGTCGGCCTACATGCTCATTTAC
GAGCGCGAGTACGTGCTTCCGGACCCTGTGCCCGCGCCCGCGTCGGTTTC
AACCTCGAACCCGGAAGGTTCCGCACCTCCGCCTGGTGGAAACTGTCTCG
CGGCGAAAGGGGGGCTTTCGCGGGATTCGAAGGCTGACGCCACGCCGTTG
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