mRNA_F-serratus_M_contig1236.1787.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1236.1787.1 vs. uniprot
Match: A0A6H5KF55_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF55_9PHAE) HSP 1 Score: 141 bits (356), Expect = 3.930e-36 Identity = 72/124 (58.06%), Postives = 89/124 (71.77%), Query Frame = 1
Query: 19 EATTYPTSYYEYKLAGVVVHSGTSDYGHYYSFAKQRKLQGGGDTGPDSWFSFNDTKVAPFDPANIPATCFGGPTASPDGRGKVPREWSAYMLIYEREYVLPDPVPAPASVSTSNPEGSAPPPGG 390
E +P SYYEYKLAGV+VH GT+D GHYYS+ K+R QGGGD P SWF FND V PFDP ++ TC GG + SP GRG P+++SAYMLIYERE++LP+P APA+ S + +AP GG
Sbjct: 44 EGEVFPDSYYEYKLAGVLVHMGTADSGHYYSYIKRRDTQGGGDI-PASWFCFNDASVTPFDPDSLGMTCHGGYSISPTGRGHTPKQFSAYMLIYEREFILPNPA-APATPSPTADAAAAPHDGG 165
BLAST of mRNA_F-serratus_M_contig1236.1787.1 vs. uniprot
Match: D7FK75_ECTSI (Ubiquitin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK75_ECTSI) HSP 1 Score: 140 bits (354), Expect = 7.420e-36 Identity = 71/124 (57.26%), Postives = 88/124 (70.97%), Query Frame = 1
Query: 19 EATTYPTSYYEYKLAGVVVHSGTSDYGHYYSFAKQRKLQGGGDTGPDSWFSFNDTKVAPFDPANIPATCFGGPTASPDGRGKVPREWSAYMLIYEREYVLPDPVPAPASVSTSNPEGSAPPPGG 390
E +P SYYEYKLAGV+VH GT+D GHYYS+ K+R QGGGD P SWF FND V PFDP ++ TC GG + SP GRG P+++SAYMLIYERE++LP+P P PA+ S + + P GG
Sbjct: 1721 EGEAFPDSYYEYKLAGVLVHMGTADSGHYYSYIKRRDTQGGGDI-PASWFCFNDASVTPFDPDSLGMTCHGGYSISPTGRGHTPKQFSAYMLIYEREFILPNPAP-PATPSPTADAAAVPHDGG 1842
BLAST of mRNA_F-serratus_M_contig1236.1787.1 vs. uniprot
Match: A0A7S1IJ16_9EUGL (Ubiquitin carboxyl-terminal hydrolase (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IJ16_9EUGL) HSP 1 Score: 99.4 bits (246), Expect = 2.020e-21 Identity = 53/109 (48.62%), Postives = 69/109 (63.30%), Query Frame = 1
Query: 31 YPTSYYEYKLAGVVVHSGTSDYGHYYSFAKQRKLQGGGDTGPDSWFSFNDTKVAPFDPANIPATCFGG--------PTASPDGRGKVPREWSAYMLIYEREYVLPDPVP 333
+P SYYEYKLAGV+VH+GT+D GHYYSF K+R DT + W+ FND +V PF+P +I TCFGG P VP+ +SAY+L+YER + +PVP
Sbjct: 312 HPPSYYEYKLAGVLVHAGTADSGHYYSFIKER------DTDEEKWYHFNDMQVEPFNPQDIQRTCFGGTEVLSQWDPVQQKHISVAVPKPYSAYLLLYER--IQQEPVP 412
BLAST of mRNA_F-serratus_M_contig1236.1787.1 vs. uniprot
Match: A0A0L0DIA6_THETB (USP domain-containing protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DIA6_THETB) HSP 1 Score: 93.6 bits (231), Expect = 2.530e-19 Identity = 53/112 (47.32%), Postives = 70/112 (62.50%), Query Frame = 1
Query: 25 TTYPTSYYEYKLAGVVVHSGTSDYGHYYSFAKQRKLQGGGDTGPDSWFSFNDTKVAPFDPANIPATCFGGP--TAS--PDGRGKVP----REWSAYMLIYER--EYVLPDPV 330
T P YY+Y+LAG++VH GT+D GHYY+F K+R + G WF FNDT V PF+P++IP FGG T S P+ R VP + +SAYML+YER +Y +PV
Sbjct: 65 TFRPDDYYQYELAGIIVHMGTADSGHYYTFVKERTVDG-------EWFRFNDTNVDPFNPSDIPVAAFGGTEYTTSWDPNLRKNVPHVTQKSYSAYMLLYERSAKYECAEPV 169
BLAST of mRNA_F-serratus_M_contig1236.1787.1 vs. uniprot
Match: A0A7S1BNC6_9STRA (Hypothetical protein n=3 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BNC6_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 6.680e-19 Identity = 45/99 (45.45%), Postives = 62/99 (62.63%), Query Frame = 1
Query: 43 YYEYKLAGVVVHSGTSDYGHYYSFAKQRKLQGGGDTGPDSWFSFNDTKVAPFDPANIPATCFGG--------PTASPDGRGKVPREWSAYMLIYEREYV 315
YY++ L GV+VH+GT+D GHYYSF K+R + W+ FND V PFDP+ +P+TCFGG P + + P+++SAY+LIYER YV
Sbjct: 2927 YYQFNLKGVLVHTGTADSGHYYSFIKERHKG-------EEWYCFNDGSVTPFDPSTMPSTCFGGTKVSHKFDPLSQKMIPNETPKQYSAYLLIYERNYV 3018
BLAST of mRNA_F-serratus_M_contig1236.1787.1 vs. uniprot
Match: L8GPA8_ACACA (Ubiquitinyl hydrolase 1 n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GPA8_ACACA) HSP 1 Score: 91.3 bits (225), Expect = 1.680e-18 Identity = 48/97 (49.48%), Postives = 63/97 (64.95%), Query Frame = 1
Query: 40 SYYEYKLAGVVVHSGTSDYGHYYSFAKQRKLQGGGDTGPDSWFSFNDTKVAPFDPANIPATCFGGP---TASPDGRGKVPREW-----SAYMLIYER 306
SYY+Y+LAG++VH+GT+DYGHYYSF ++R + G+ W+ FNDT V PFDP IP TCFGG T + GK +W +AYML Y+R
Sbjct: 1645 SYYKYELAGILVHTGTADYGHYYSFIRERLPKVAGEA--CKWYQFNDTLVEPFDPEEIPKTCFGGADTVTEWDEVAGKHVPKWRAKTYNAYMLFYQR 1739
BLAST of mRNA_F-serratus_M_contig1236.1787.1 vs. uniprot
Match: A0A6B2KWA6_9EUKA (USP domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2KWA6_9EUKA) HSP 1 Score: 89.4 bits (220), Expect = 7.650e-18 Identity = 47/107 (43.93%), Postives = 66/107 (61.68%), Query Frame = 1
Query: 31 YPTSYYEYKLAGVVVHSGTSDYGHYYSFAKQRKLQGGGDTGPDSWFSFNDTKVAPFDPANIPATCFGGPTASPDGRGK--VPREWSAYMLIYEREY----VLPDPVP 333
YP S+Y+Y L G++VH+GT++ GHYYSF K D+ + WF FNDT++ PFD +IP CFGG GR V + ++AY+LIYER V+ +P+P
Sbjct: 289 YPLSHYDYDLTGILVHNGTTESGHYYSFIK--------DSQSNQWFQFNDTQITPFDANDIPDQCFGGVETQRVGRTTRTVQKTYNAYLLIYERSCPEKPVVENPIP 387
BLAST of mRNA_F-serratus_M_contig1236.1787.1 vs. uniprot
Match: A0A7S3ANS1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3ANS1_9EUKA) HSP 1 Score: 87.8 bits (216), Expect = 1.300e-17 Identity = 59/141 (41.84%), Postives = 73/141 (51.77%), Query Frame = 1
Query: 4 AEGLAEATTYPTSY-------YEYKLAGVVVHSGTSDYGHYYSFAKQRKLQ--GGGDTGPDSWFSFNDTKVAPFDPANIPATCFGG--PTASPDG------RGKVPREWSAYMLIYEREYVLPDPVPAPASVSTSNPEGSA 375
AEG AEA+ Y Y+LAGV+VHSGTSD GHYYSF ++R+ Q GG W FNDT + PFD +I C+GG P D + P++ SAYML YER V P AP + + P SA
Sbjct: 184 AEGAAEASDASADLEAATAAGYVYQLAGVLVHSGTSDSGHYYSFIRERRCQPPGGAGQSGSGWLHFNDTLIEPFDERDIAKCCYGGVEPLTQWDAEMAKHVQRNAPKQHSAYMLFYER--VQPTAASAPVAATEPAPGSSA 322
BLAST of mRNA_F-serratus_M_contig1236.1787.1 vs. uniprot
Match: A0A2P6NCG0_9EUKA (USP domain-containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NCG0_9EUKA) HSP 1 Score: 88.2 bits (217), Expect = 1.990e-17 Identity = 52/117 (44.44%), Postives = 66/117 (56.41%), Query Frame = 1
Query: 4 AEG--LAEATTYPTSYYEYKLAGVVVHSGTSDYGHYYSFAKQRKLQGG------GDTGPDSWFSFNDTKVAPFDPANIPATCFGGPTASPDG--------RGKVPREWSAYMLIYER 306
AEG L+EA T+P +YY+Y+L GV+VHSG++D GHYYS+ K+R Q G+ D WF +ND V FDP +IP CFGG R R SAYML Y+R
Sbjct: 1892 AEGRSLSEAETFPETYYQYQLMGVLVHSGSADAGHYYSYIKERGGQANSLRSSVGEDQGDRWFEYNDKNVTLFDPKDIPTECFGGTQQVTHWDERTRSYVRKTYDRVRSAYMLFYDR 2008
BLAST of mRNA_F-serratus_M_contig1236.1787.1 vs. uniprot
Match: A0A2R5GHV8_9STRA (Ubiquitin carboxyl-terminal hydrolase 34 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GHV8_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 2.740e-17 Identity = 51/99 (51.52%), Postives = 63/99 (63.64%), Query Frame = 1
Query: 34 PTSYYEYKLAGVVVHSGTSDYGHYYSFAKQRKLQGGGDTGPDSWFSFNDTKVAPFDPANIPATCFGGP-TASPDG-RGKVPRE------WSAYMLIYER 306
P SYYEY+L G++VH+GT+D GHYYSF K+R D WF FND +V+ FDPA IP T FGG A DG + + P + +SAYMLIYER
Sbjct: 2882 PDSYYEYELVGILVHTGTADSGHYYSFIKERVPTA--DRTSCEWFHFNDEQVSHFDPATIPETSFGGAKNAQWDGNQQRAPSQSWSNKPYSAYMLIYER 2978 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1236.1787.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1236.1787.1 >prot_F-serratus_M_contig1236.1787.1 ID=prot_F-serratus_M_contig1236.1787.1|Name=mRNA_F-serratus_M_contig1236.1787.1|organism=Fucus serratus male|type=polypeptide|length=150bp RAEGLAEATTYPTSYYEYKLAGVVVHSGTSDYGHYYSFAKQRKLQGGGDTback to top mRNA from alignment at F-serratus_M_contig1236:31313..32183+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1236.1787.1 ID=mRNA_F-serratus_M_contig1236.1787.1|Name=mRNA_F-serratus_M_contig1236.1787.1|organism=Fucus serratus male|type=mRNA|length=871bp|location=Sequence derived from alignment at F-serratus_M_contig1236:31313..32183+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1236:31313..32183+ >mRNA_F-serratus_M_contig1236.1787.1 ID=mRNA_F-serratus_M_contig1236.1787.1|Name=mRNA_F-serratus_M_contig1236.1787.1|organism=Fucus serratus male|type=CDS|length=900bp|location=Sequence derived from alignment at F-serratus_M_contig1236:31313..32183+ (Fucus serratus male)back to top |