mRNA_F-serratus_M_contig1234.1768.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1234.1768.1
Unique NamemRNA_F-serratus_M_contig1234.1768.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1234.1768.1 vs. uniprot
Match: A0A6H5JIS8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIS8_9PHAE)

HSP 1 Score: 254 bits (650), Expect = 1.880e-72
Identity = 150/346 (43.35%), Postives = 195/346 (56.36%), Query Frame = 1 
Query:  169 KVGQRRKSAVADAFDKFVRSRSDRAAGWEDASPEVVVEWLCFLDSQGNGTTIVHATSCPQVGQYSL-SCSDSALGCTRRYAFGSLQKSFVSKLKRAYVEILGRFEDWSPQDMRGNPVTGAVVDQYLAFTTQEQLRAGVTPKQATPILRPDFQHLMRDMHTGLLCAAQPGDRLAYARDMALFAVAFRAGSRGNDLAKLLAAQVLHLPSNQGLVLNFHFTKTLRDGAAHASLLAPDNVMPETCAVAAMLRYAQAAKSCDWDMSKGYLFPEIQDAGKHTPKRLARPLSAKAMAARFKEHLGRAGLGERKFTFHSFRVGCAVTQTIAGKDIAEIMAAVNWKSEKTARRYV 1203
            + G+ RK  VAD FD F+ S S    GW  ASP+ VV+W  +LDSQG GT +VH  +C  VG     SCS  A  C +RY   SL+K F SKLK AY E LGR +DW+P    GNP     VD YL FTT+EQ R GVT KQA P+L      L+  M    L +    +R+A  RD+ALF++A  +  RG DL+  L +QVL LP ++G + NF F KTLR       +LA  N   + CAV A+  Y  AA+   WD+S GYLFP + D G     +L     A  M +  + HL  A L    F+ HSFRVG ++++++ G  I EIM    WK+E  A+ YV
Sbjct:  686 RAGEVRKHRVADEFDLFLLSYSGGGKGWVHASPDDVVDWFSYLDSQGKGTKLVHDATCAGVGSSDRRSCSPGAT-CKKRYGAESLRKGFYSKLKMAYKEQLGRGDDWNPTVGSGNPCASPTVDAYLTFTTEEQKRVGVTAKQAAPLLEDTLGELLPHMRLRALASDSMAERIAITRDVALFSLAHHSMRRGFDLSFTLGSQVLRLPESRGFIFNFLFGKTLRASTEAIVVLASTN--RDVCAVRAVAEYILAAQQVGWDLSSGYLFPSVLDDGSRGNSKLV----ATQMTSSLQAHLRAASLPAH-FSMHSFRVGGSLSRSMGGSAIEEIMQIGGWKTESMAKYYV 1023
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BLAST of mRNA_F-serratus_M_contig1234.1768.1 vs. uniprot
Match: UPI000A2A7226 (uncharacterized protein LOC110250634 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A7226)

HSP 1 Score: 162 bits (409), Expect = 4.790e-42
Identity = 123/373 (32.98%), Postives = 183/373 (49.06%), Query Frame = 1 
Query:   88 ENGATLLQVNESQLRTRYDQFRSFQKDKVGQRRKSAVADAFDKFVRSRSDRAAGWEDASPEVVVEWLCFLDSQGNGTTIVHATSCPQVGQYSLSCSDSALGCTRRYAFGSLQKSFVSKLKRAYVEILGRFEDWSPQDMRGNPVTGAVVDQYLAFTTQEQLRAGVTPKQATPILRPDFQHLMRDMHTGLLCAA-QPGDRLAYARDMALFAVAFRAGSRGNDLAKLLAAQVLHLPSNQGLVLNFHFTKTLRDGAAHASLLAPDNVMPETCAVAAMLRYAQAAKSCDWDMSKGYLFPEIQDAGKHTPKRLARPLSAKAMAARFKEHLGRAGLGERKFTFHSFRVGCAVTQTIAGKDIAEIMAAVNWKSEKTARRYV 1203
            ++  T  +VN   +  R  Q R   ++    ++KS++   F+ F+RS   R   +  A+PE V  +L + D  G     VH  SCP +    ++       C RR AF ++  S+V KL+  + E  GR  DW+     GNP     V QYL   T+EQLRA + PKQATP+       L R     L  A+ QP +    ARD A F   F +  RG++L  +  +++L  P + GL+ N  + KTLRDG ++   +   +  P+ C V A+  Y   A     D+S GYLF      G    K     LS+ A   R K +L  A + E + T HSFR G A+T  ++G  +A++MA V W ++ TA  Y+
Sbjct:   11 QSSNTTAEVNIESIDERLLQLRESVQNSSYSKQKSSLRLEFETFLRSLXRRKCIFS-AAPEDVARFLVWKDPSGKKA--VHVBSCPNIASQKVT----TCACPRRLAFKTVD-SYVGKLRAIFNEA-GRTGDWNGMLGFGNPAASPEVQQYLKAVTEEQLRAHMRPKQATPLFLSKLLLLARLWDRKLANASTQPVNHFTLARDQAFFKALFFSFDRGSELGSVRTSEILRFPRDDGLLFNHVWGKTLRDGTSNVFGIRR-HANPQICPVRAIETYVATAAELRIDLSDGYLFRPTNHQGHIVNKAF---LSSTA-EGRLKTYLKEANIDEGE-TLHSFRAGXAITLALSGAQLADVMAHVGWSNKGTALYYM 368
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BLAST of mRNA_F-serratus_M_contig1234.1768.1 vs. uniprot
Match: UPI00106AFE02 (uncharacterized protein LOC114544373 n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106AFE02)

HSP 1 Score: 93.2 bits (230), Expect = 9.500e-17
Identity = 71/254 (27.95%), Postives = 121/254 (47.64%), Query Frame = 1 
Query:   82 PSENGATLLQVNESQLRTRYDQFRSFQKDKVGQRRKSAVADAFDKFVRSRSDRAAGWEDASPEVVVEWLCFLDSQGNGTTIVHATSCPQVGQYSLSCSDSALGCTRRYAFGSLQKSFVSKLKRAYVEIL--GRFEDWSPQDMRGNPVTGAVVDQYLAFTTQEQLRAGVTPKQATPILRPDFQHLMRDMHTGLLCA-AQPGDRLAYARDMALFAVAFRAGSRGNDLAKLLAAQVLHLPSNQGLVLNFHFTKTLRD 834
            PS +    ++++   +  R     + + +K  Q++KS +   F+ F+ S     +    A+PE ++ +L + D  G   T++H   CP  G   +        C RR A  ++  + ++KL+  ++      +  D  P     NP     V QYLA   +EQ +A ++PKQATP+    F+ L   +H  +      P     YARD+  F++ F +GSR +DL ++   QVL LP + G +    F KTLR+
Sbjct:  438 PSTSAPPRVRIDFPSINARLSLLHATRNEKPYQKQKSQLQTQFEAFMASLPSPKSILS-ATPEDIIRFLIWRDQFGK--TVIHHRICPHFG---VRDRQPPCDCPRRLAANTVDNN-IAKLRTIFLSARRPDQISDGLPPY---NPAAHPSVKQYLASICEEQAKATISPKQATPLFHDKFKVLCTHLHQRIRQHDLSPTLCYLYARDLGFFSIDFYSGSRASDLGRIHTKQVLTLPDSGGFLFRQTFGKTLRN 681
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1234.1768.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JIS8_9PHAE1.880e-7243.35Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
UPI000A2A72264.790e-4232.98uncharacterized protein LOC110250634 n=1 Tax=Exaip... [more]
UPI00106AFE029.500e-1727.95uncharacterized protein LOC114544373 n=1 Tax=Dendr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1234contigF-serratus_M_contig1234:256627..257829 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score126.7
Seed ortholog evalue2.4e-26
Seed eggNOG ortholog7739.XP_002592500.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protein of unknown function (DUF640)
EggNOG OGs3AMDY@33154,3C0VI@33208,KOG0297@1,KOG0297@2759
COG Functional cat.S
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Exons1
Model size1203
Cds size1203
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929152.558825-CDS-F-serratus_M_contig1234:256626..2578291622929152.558825-CDS-F-serratus_M_contig1234:256626..257829Fucus serratus maleCDSF-serratus_M_contig1234 256627..257829 +
1690962725.7927155-CDS-F-serratus_M_contig1234:256626..2578291690962725.7927155-CDS-F-serratus_M_contig1234:256626..257829Fucus serratus maleCDSF-serratus_M_contig1234 256627..257829 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1234.1768.1prot_F-serratus_M_contig1234.1768.1Fucus serratus malepolypeptideF-serratus_M_contig1234 256627..257829 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1234.1768.1

>prot_F-serratus_M_contig1234.1768.1 ID=prot_F-serratus_M_contig1234.1768.1|Name=mRNA_F-serratus_M_contig1234.1768.1|organism=Fucus serratus male|type=polypeptide|length=401bp
CHVCFHENDETYRFCQNCRGQAPRGCSPSENGATLLQVNESQLRTRYDQF
RSFQKDKVGQRRKSAVADAFDKFVRSRSDRAAGWEDASPEVVVEWLCFLD
SQGNGTTIVHATSCPQVGQYSLSCSDSALGCTRRYAFGSLQKSFVSKLKR
AYVEILGRFEDWSPQDMRGNPVTGAVVDQYLAFTTQEQLRAGVTPKQATP
ILRPDFQHLMRDMHTGLLCAAQPGDRLAYARDMALFAVAFRAGSRGNDLA
KLLAAQVLHLPSNQGLVLNFHFTKTLRDGAAHASLLAPDNVMPETCAVAA
MLRYAQAAKSCDWDMSKGYLFPEIQDAGKHTPKRLARPLSAKAMAARFKE
HLGRAGLGERKFTFHSFRVGCAVTQTIAGKDIAEIMAAVNWKSEKTARRY
V
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mRNA from alignment at F-serratus_M_contig1234:256627..257829+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1234.1768.1 ID=mRNA_F-serratus_M_contig1234.1768.1|Name=mRNA_F-serratus_M_contig1234.1768.1|organism=Fucus serratus male|type=mRNA|length=1203bp|location=Sequence derived from alignment at F-serratus_M_contig1234:256627..257829+ (Fucus serratus male)
TGCCACGTGTGCTTTCACGAAAACGATGAAACCTACAGGTTCTGTCAGAA
CTGCCGGGGCCAAGCACCCCGGGGGTGTTCCCCCAGCGAGAACGGCGCCA
CCCTCCTCCAGGTCAACGAGTCCCAACTTCGCACCCGGTATGATCAATTC
CGCTCCTTTCAGAAGGACAAGGTAGGGCAGCGGCGCAAGAGTGCGGTGGC
CGACGCATTCGACAAGTTTGTGAGGTCCCGTTCGGACAGGGCGGCGGGGT
GGGAAGACGCCTCCCCCGAAGTGGTGGTAGAGTGGCTGTGCTTCCTCGAT
TCGCAAGGCAACGGAACTACGATCGTACACGCGACCTCATGCCCTCAGGT
GGGACAGTATTCCCTCTCCTGTTCCGACAGCGCGCTCGGCTGTACACGGC
GATATGCGTTCGGATCACTGCAAAAGTCGTTCGTATCCAAACTTAAGCGG
GCATACGTAGAAATCCTAGGGCGCTTCGAAGATTGGTCACCACAGGACAT
GAGAGGTAACCCAGTGACGGGGGCCGTGGTCGATCAATACCTTGCCTTTA
CGACGCAGGAGCAACTGAGGGCGGGGGTCACACCCAAGCAGGCGACCCCT
ATCCTTCGCCCTGACTTCCAGCATCTAATGCGCGACATGCACACGGGTCT
CCTCTGCGCTGCGCAACCAGGCGACCGTCTAGCGTACGCCCGCGACATGG
CTTTGTTTGCGGTAGCGTTCCGCGCCGGAAGCCGCGGCAACGACCTGGCC
AAGCTTTTAGCCGCACAGGTCCTGCATCTGCCTTCCAATCAAGGGCTGGT
TTTAAATTTCCACTTTACGAAAACACTACGAGATGGGGCCGCGCACGCCT
CCCTCCTGGCTCCCGACAATGTCATGCCAGAGACGTGCGCGGTAGCGGCA
ATGCTACGCTACGCGCAGGCCGCCAAGTCTTGCGATTGGGATATGTCCAA
GGGTTACCTTTTCCCCGAAATACAAGATGCTGGTAAGCACACACCTAAAC
GGCTTGCTAGACCCTTGTCCGCAAAAGCAATGGCAGCGCGCTTTAAGGAA
CACCTGGGTCGCGCAGGCTTGGGGGAGCGGAAATTTACCTTCCATTCGTT
TAGGGTGGGGTGTGCTGTCACTCAGACCATCGCAGGTAAGGATATCGCGG
AAATTATGGCGGCGGTCAACTGGAAGTCGGAGAAGACTGCACGCCGGTAT
GTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1234:256627..257829+

>mRNA_F-serratus_M_contig1234.1768.1 ID=mRNA_F-serratus_M_contig1234.1768.1|Name=mRNA_F-serratus_M_contig1234.1768.1|organism=Fucus serratus male|type=CDS|length=2406bp|location=Sequence derived from alignment at F-serratus_M_contig1234:256627..257829+ (Fucus serratus male)
TGCCACGTGTGCTTTCACGAAAACGATGAAACCTACAGGTTCTGTCAGAA
CTGCCGGGGCCAAGCACCCCGGGGGTGTTCCCCCAGCGAGAACGGCGCCA
CCCTCCTCCAGGTCAACGAGTCCCAACTTCGCACCCGGTATGATCAATTC
CGCTCCTTTCAGAAGGACAAGGTAGGGCAGCGGCGCAAGAGTGCGGTGGC
CGACGCATTCGACAAGTTTGTGAGGTCCCGTTCGGACAGGGCGGCGGGGT
GGGAAGACGCCTCCCCCGAAGTGGTGGTAGAGTGGCTGTGCTTCCTCGAT
TCGCAAGGCAACGGAACTACGATCGTACACGCGACCTCATGCCCTCAGGT
GGGACAGTATTCCCTCTCCTGTTCCGACAGCGCGCTCGGCTGTACACGGC
GATATGCGTTCGGATCACTGCAAAAGTCGTTCGTATCCAAACTTAAGCGG
GCATACGTAGAAATCCTAGGGCGCTTCGAAGATTGGTCACCACAGGACAT
GAGAGGTAACCCAGTGACGGGGGCCGTGGTCGATCAATACCTTGCCTTTA
CGACGCAGGAGCAACTGAGGGCGGGGGTCACACCCAAGCAGGCGACCCCT
ATCCTTCGCCCTGACTTCCAGCATCTAATGCGCGACATGCACACGGGTCT
CCTCTGCGCTGCGCAACCAGGCGACCGTCTAGCGTACGCCCGCGACATGG
CTTTGTTTGCGGTAGCGTTCCGCGCCGGAAGCCGCGGCAACGACCTGGCC
AAGCTTTTAGCCGCACAGGTCCTGCATCTGCCTTCCAATCAAGGGCTGGT
TTTAAATTTCCACTTTACGAAAACACTACGAGATGGGGCCGCGCACGCCT
CCCTCCTGGCTCCCGACAATGTCATGCCAGAGACGTGCGCGGTAGCGGCA
ATGCTACGCTACGCGCAGGCCGCCAAGTCTTGCGATTGGGATATGTCCAA
GGGTTACCTTTTCCCCGAAATACAAGATGCTGGTAAGCACACACCTAAAC
GGCTTGCTAGACCCTTGTCCGCAAAAGCAATGGCAGCGCGCTTTAAGGAA
CACCTGGGTCGCGCAGGCTTGGGGGAGCGGAAATTTACCTTCCATTCGTT
TAGGGTGGGGTGTGCTGTCACTCAGACCATCGCAGGTAAGGATATCGCGG
AAATTATGGCGGCGGTCAACTGGAAGTCGGAGAAGACTGCACGCCGGTAT
GTGTGCCACGTGTGCTTTCACGAAAACGATGAAACCTACAGGTTCTGTCA
GAACTGCCGGGGCCAAGCACCCCGGGGGTGTTCCCCCAGCGAGAACGGCG
CCACCCTCCTCCAGGTCAACGAGTCCCAACTTCGCACCCGGTATGATCAA
TTCCGCTCCTTTCAGAAGGACAAGGTAGGGCAGCGGCGCAAGAGTGCGGT
GGCCGACGCATTCGACAAGTTTGTGAGGTCCCGTTCGGACAGGGCGGCGG
GGTGGGAAGACGCCTCCCCCGAAGTGGTGGTAGAGTGGCTGTGCTTCCTC
GATTCGCAAGGCAACGGAACTACGATCGTACACGCGACCTCATGCCCTCA
GGTGGGACAGTATTCCCTCTCCTGTTCCGACAGCGCGCTCGGCTGTACAC
GGCGATATGCGTTCGGATCACTGCAAAAGTCGTTCGTATCCAAACTTAAG
CGGGCATACGTAGAAATCCTAGGGCGCTTCGAAGATTGGTCACCACAGGA
CATGAGAGGTAACCCAGTGACGGGGGCCGTGGTCGATCAATACCTTGCCT
TTACGACGCAGGAGCAACTGAGGGCGGGGGTCACACCCAAGCAGGCGACC
CCTATCCTTCGCCCTGACTTCCAGCATCTAATGCGCGACATGCACACGGG
TCTCCTCTGCGCTGCGCAACCAGGCGACCGTCTAGCGTACGCCCGCGACA
TGGCTTTGTTTGCGGTAGCGTTCCGCGCCGGAAGCCGCGGCAACGACCTG
GCCAAGCTTTTAGCCGCACAGGTCCTGCATCTGCCTTCCAATCAAGGGCT
GGTTTTAAATTTCCACTTTACGAAAACACTACGAGATGGGGCCGCGCACG
CCTCCCTCCTGGCTCCCGACAATGTCATGCCAGAGACGTGCGCGGTAGCG
GCAATGCTACGCTACGCGCAGGCCGCCAAGTCTTGCGATTGGGATATGTC
CAAGGGTTACCTTTTCCCCGAAATACAAGATGCTGGTAAGCACACACCTA
AACGGCTTGCTAGACCCTTGTCCGCAAAAGCAATGGCAGCGCGCTTTAAG
GAACACCTGGGTCGCGCAGGCTTGGGGGAGCGGAAATTTACCTTCCATTC
GTTTAGGGTGGGGTGTGCTGTCACTCAGACCATCGCAGGTAAGGATATCG
CGGAAATTATGGCGGCGGTCAACTGGAAGTCGGAGAAGACTGCACGCCGG
TATGTG
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