mRNA_F-serratus_M_contig1234.1766.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1234.1766.1
Unique NamemRNA_F-serratus_M_contig1234.1766.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1234.1766.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1234contigF-serratus_M_contig1234:224552..225800 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size463
Cds size213
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1234.1766.1prot_F-serratus_M_contig1234.1766.1Fucus serratus malepolypeptideF-serratus_M_contig1234 224552..225550 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929152.3516774-CDS-F-serratus_M_contig1234:224551..2246591622929152.3516774-CDS-F-serratus_M_contig1234:224551..224659Fucus serratus maleCDSF-serratus_M_contig1234 224552..224659 -
1690962725.7570934-CDS-F-serratus_M_contig1234:224551..2246591690962725.7570934-CDS-F-serratus_M_contig1234:224551..224659Fucus serratus maleCDSF-serratus_M_contig1234 224552..224659 -
1622929152.3990767-CDS-F-serratus_M_contig1234:225445..2255501622929152.3990767-CDS-F-serratus_M_contig1234:225445..225550Fucus serratus maleCDSF-serratus_M_contig1234 225446..225550 -
1690962725.7654264-CDS-F-serratus_M_contig1234:225445..2255501690962725.7654264-CDS-F-serratus_M_contig1234:225445..225550Fucus serratus maleCDSF-serratus_M_contig1234 225446..225550 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929152.4324799-UTR-F-serratus_M_contig1234:225550..2258001622929152.4324799-UTR-F-serratus_M_contig1234:225550..225800Fucus serratus maleUTRF-serratus_M_contig1234 225551..225800 -
1690962725.7730446-UTR-F-serratus_M_contig1234:225550..2258001690962725.7730446-UTR-F-serratus_M_contig1234:225550..225800Fucus serratus maleUTRF-serratus_M_contig1234 225551..225800 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1234.1766.1

>prot_F-serratus_M_contig1234.1766.1 ID=prot_F-serratus_M_contig1234.1766.1|Name=mRNA_F-serratus_M_contig1234.1766.1|organism=Fucus serratus male|type=polypeptide|length=71bp
MRAAGVYHSQDNRPFLNPSTSIYVDDFNVWGMTNPHSEGASYFALPTLDR
RLLRLSRHLYPTTMATPGAS*
back to top

mRNA from alignment at F-serratus_M_contig1234:224552..225800-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1234.1766.1 ID=mRNA_F-serratus_M_contig1234.1766.1|Name=mRNA_F-serratus_M_contig1234.1766.1|organism=Fucus serratus male|type=mRNA|length=1249bp|location=Sequence derived from alignment at F-serratus_M_contig1234:224552..225800- (Fucus serratus male)
AGAAAACGGGATGGGTTCTGAGATCAATCTTGGCGTGGAGCAGGTCCTTG
ATTTGGTTGAGGTCCTCACCGCTGACGAGGAGTCCAGCGATGTACACAAG
CGTCCCTGGAGGCAAGGAGAACGACGGTTGGGATAGTCCTTCGTAGCTGA
GGGGTTTACTGAACGCAAGGCGGGAGGTCGTTTCGTCCGCGTCGGACAGG
CTAGGGACGGGTGGAGACGTGCCGGAGCTACTGATGAAAACTTGCCTGAC
ATGCGAGCTGCGGGCGTGTACCATAGTCAAGACAATCGCCCGTTTCTGAA
CCCCTCCACGAGCATCTACGTGGATGATTTCAATGTTTGGGGCATGACAA
ACCCGGTGAGTTATATTCGTTTTCGATTGAATTTGAACAATGTAACGGAT
ATTTACGCTATCTGCATTATTTTCAATGGACCACGCGTGCAAACTACGCA
CACTGGAGGGTTTTTCAACCTTAACAATATTTTAAGATATCGGGCGTACT
GTAGTTTCTCCACGAACGAAAATGCCTCCCTATTATCGCGGCACGCACTT
CCACTCCGCCTTTGTTTCCACCGCTACACAGCACTATACTACACCGATTT
TCCCAGCGGGAGACTTTGGTGGGGTTGAAGAAAATCGGTAACTAGCTTTA
CGCGATATACCGTACAACTTACACGGCGCCAGATAGACGCGAAATCCAAA
TCTCTGTATGTAGCTTCTGCCACTTACACCAGACGGGAAAAAAAGTCGAC
TCCTTTCCTCTCGGTTACGCCGATTCGTGAAGCCTTTCTGCCGATTGTCA
ACAAGTAACAACGTAAAAGCATGTACTTCTATGCCCAGCCGGGTCCAACC
ACATGTCTCACAGATGTGCACTGCGCCTCTGGCCTTGTGGTATATCTTGA
TATCGGGGAAACGCCTCTGGTTAGGTCACAGAAGAAAAATAGAGTTTCTG
AGACTAAAGTCGGCAATAAATCATAAATCGAAGCCATAGATTATGCGCCT
TACATGAACTGCGGAGATGGGCATCATTGTCGAAACAAAACATTGGTCTT
TGATGGCCAAACCATGCATATATCGCGCAAAATGGCGTCATCCATCCCCA
ATTTTTCTCTCATTCCTGTCCTCCTCGCTATTCCCTTGCAGCATTCCGAG
GGTGCCTCGTACTTCGCACTTCCTACGCTGGACCGTCGCCTTCTACGTCT
GTCCCGGCATCTTTATCCTACGACGATGGCCACCCCTGGAGCAAGCTAA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1234:224552..225800-

>mRNA_F-serratus_M_contig1234.1766.1 ID=mRNA_F-serratus_M_contig1234.1766.1|Name=mRNA_F-serratus_M_contig1234.1766.1|organism=Fucus serratus male|type=CDS|length=426bp|location=Sequence derived from alignment at F-serratus_M_contig1234:224552..225800- (Fucus serratus male)
ATGCGAGCTGCGGGCGTGTACCATAGTCAAGACAATCGCCCGTTTCTGAA
CCCCTCCACGAGCATCTACGTGGATGATTTCAATGTTTGGGGCATGACAA
ACCCGATGCGAGCTGCGGGCGTGTACCATAGTCAAGACAATCGCCCGTTT
CTGAACCCCTCCACGAGCATCTACGTGGATGATTTCAATGTTTGGGGCAT
GACAAACCCGCATTCCGAGGGTGCCTCGTACTTCGCACTTCCTACGCTGG
ACCGTCGCCTTCTACGTCTGTCCCGGCATCTTTATCCTACGACGATGGCC
ACCCCTGGAGCAAGCTAACATTCCGAGGGTGCCTCGTACTTCGCACTTCC
TACGCTGGACCGTCGCCTTCTACGTCTGTCCCGGCATCTTTATCCTACGA
CGATGGCCACCCCTGGAGCAAGCTAA
back to top