mRNA_F-serratus_M_contig1231.1754.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1231.1754.1
Unique NamemRNA_F-serratus_M_contig1231.1754.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1231.1754.1 vs. uniprot
Match: A0A6H5JWF9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWF9_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 1.080e-15
Identity = 46/103 (44.66%), Postives = 63/103 (61.17%), Query Frame = 1 
Query:   19 MESGDDPDDFLYTMGGFRESLEDMGQPVPDERYKDIILQALPAEYERVHTASYERRDIHLADIRRMMSALYIDCLSRPNNSSLVAGRGVTMQAIGGDDSAIKC 327
            M  G+DPD F  T+   R+  +DM + + DER++D+ILQA+  +Y+ V   S+  R   L +I+  M ++YID LSR    S VAGRGV M A  GD S IKC
Sbjct:    1 MAQGEDPDGFFITVEDVRQRPKDMVEIISDERFEDVILQAISNDYDYVRPTSFRVRHFGLEEIKTTMKSMYIDSLSRTWTKS-VAGRGVAMPASNGD-SIIKC 101
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1231.1754.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JWF9_9PHAE1.080e-1544.66Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1231contigF-serratus_M_contig1231:8049..8426 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size378
Cds size360
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929147.9071467-UTR-F-serratus_M_contig1231:8048..80661622929147.9071467-UTR-F-serratus_M_contig1231:8048..8066Fucus serratus maleUTRF-serratus_M_contig1231 8049..8066 +
1690962725.0029533-UTR-F-serratus_M_contig1231:8048..80661690962725.0029533-UTR-F-serratus_M_contig1231:8048..8066Fucus serratus maleUTRF-serratus_M_contig1231 8049..8066 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929147.925381-CDS-F-serratus_M_contig1231:8066..84261622929147.925381-CDS-F-serratus_M_contig1231:8066..8426Fucus serratus maleCDSF-serratus_M_contig1231 8067..8426 +
1690962725.0128517-CDS-F-serratus_M_contig1231:8066..84261690962725.0128517-CDS-F-serratus_M_contig1231:8066..8426Fucus serratus maleCDSF-serratus_M_contig1231 8067..8426 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1231.1754.1prot_F-serratus_M_contig1231.1754.1Fucus serratus malepolypeptideF-serratus_M_contig1231 8067..8426 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1231.1754.1

>prot_F-serratus_M_contig1231.1754.1 ID=prot_F-serratus_M_contig1231.1754.1|Name=mRNA_F-serratus_M_contig1231.1754.1|organism=Fucus serratus male|type=polypeptide|length=120bp
MESGDDPDDFLYTMGGFRESLEDMGQPVPDERYKDIILQALPAEYERVHT
ASYERRDIHLADIRRMMSALYIDCLSRPNNSSLVAGRGVTMQAIGGDDSA
IKCHYYGNPGHRQKNCVAWI
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mRNA from alignment at F-serratus_M_contig1231:8049..8426+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1231.1754.1 ID=mRNA_F-serratus_M_contig1231.1754.1|Name=mRNA_F-serratus_M_contig1231.1754.1|organism=Fucus serratus male|type=mRNA|length=378bp|location=Sequence derived from alignment at F-serratus_M_contig1231:8049..8426+ (Fucus serratus male)
AAGCTGCACAGCACTAAAATGGAATCAGGCGATGATCCTGACGATTTTCT
GTACACCATGGGCGGCTTTCGCGAGAGTCTGGAGGACATGGGCCAGCCAG
TGCCTGACGAGCGGTACAAGGACATTATTCTTCAGGCCCTTCCTGCCGAG
TACGAGAGGGTCCACACAGCTAGCTACGAGAGGCGGGATATTCACCTGGC
AGATATCCGGCGCATGATGAGTGCCCTGTACATCGACTGCCTTTCCCGTC
CGAACAACTCCTCCTTGGTCGCGGGTCGTGGGGTTACCATGCAGGCGATC
GGGGGAGACGACAGCGCTATCAAGTGTCACTATTACGGCAATCCGGGGCA
CCGCCAGAAAAATTGTGTCGCCTGGATT
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Coding sequence (CDS) from alignment at F-serratus_M_contig1231:8049..8426+

>mRNA_F-serratus_M_contig1231.1754.1 ID=mRNA_F-serratus_M_contig1231.1754.1|Name=mRNA_F-serratus_M_contig1231.1754.1|organism=Fucus serratus male|type=CDS|length=720bp|location=Sequence derived from alignment at F-serratus_M_contig1231:8049..8426+ (Fucus serratus male)
ATGGAATCAGGCGATGATCCTGACGATTTTCTGTACACCATGGGCGGCTT
TCGCGAGAGTCTGGAGGACATGGGCCAGCCAGTGCCTGACGAGCGGTACA
AGGACATTATTCTTCAGGCCCTTCCTGCCGAGTACGAGAGGGTCCACACA
GCTAGCTACGAGAGGCGGGATATTCACCTGGCAGATATCCGGCGCATGAT
GAGTGCCCTGTACATCGACTGCCTTTCCCGTCCGAACAACTCCTCCTTGG
TCGCGGGTCGTGGGGTTACCATGCAGGCGATCGGGGGAGACGACAGCGCT
ATCAAGTGTCACTATTACGGCAATCCGGGGCACCGCCAGAAAAATTGTGT
CGCCTGGATTATGGAATCAGGCGATGATCCTGACGATTTTCTGTACACCA
TGGGCGGCTTTCGCGAGAGTCTGGAGGACATGGGCCAGCCAGTGCCTGAC
GAGCGGTACAAGGACATTATTCTTCAGGCCCTTCCTGCCGAGTACGAGAG
GGTCCACACAGCTAGCTACGAGAGGCGGGATATTCACCTGGCAGATATCC
GGCGCATGATGAGTGCCCTGTACATCGACTGCCTTTCCCGTCCGAACAAC
TCCTCCTTGGTCGCGGGTCGTGGGGTTACCATGCAGGCGATCGGGGGAGA
CGACAGCGCTATCAAGTGTCACTATTACGGCAATCCGGGGCACCGCCAGA
AAAATTGTGTCGCCTGGATT
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