mRNA_F-serratus_M_contig123.1752.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig123.1752.1
Unique NamemRNA_F-serratus_M_contig123.1752.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig123.1752.1 vs. uniprot
Match: A0A6H5JK47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK47_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 7.260e-15
Identity = 45/113 (39.82%), Postives = 62/113 (54.87%), Query Frame = 3 
Query:   27 NSKYRAMRRAQAHRAYWRDQNKYYLEQGYHLVSYSTWEKKFRGRRIPLRAFFWWKNHQG-WWLGQVKAWDRDIYDQYFVRFHDDPGPAQVMLAEEFYTTDVDGVPGSWCLQSH 362
            N  YR  R   A R   R + + YL  G  LV + TW ++F    +P+ A  W+K   G WW G++ A   D Y    VRF DDPGP+ + L E+ Y+T ++ V GSWCL+ H
Sbjct: 2066 NRAYRNTRTRAAQRELARTRGERYLPPGADLVLHETWLRRFSSSPLPVGARLWYKARDGLWWTGRIGAHQGDSY---IVRFLDDPGPSVLPLPEDLYSTALNAVCGSWCLEKH 2175
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BLAST of mRNA_F-serratus_M_contig123.1752.1 vs. uniprot
Match: A0A6H5KL08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL08_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 1.660e-14
Identity = 45/113 (39.82%), Postives = 60/113 (53.10%), Query Frame = 3 
Query:   27 NSKYRAMRRAQAHRAYWRDQNKYYLEQGYHLVSYSTWEKKFRGRRIPLRAFFWWKNHQG-WWLGQVKAWDRDIYDQYFVRFHDDPGPAQVMLAEEFYTTDVDGVPGSWCLQSH 362
            N  YR  R   A R   R + + YL  G  LV + TW ++F    +P+ A  W+K   G WW G + A   D Y    VRF DDPGP  + L E+ Y+T ++ V GSWCL+ H
Sbjct:  270 NRAYRNTRTRAAQRELARTRGERYLPPGADLVLHETWLRRFSSSPLPVGARLWYKARDGLWWTGLIGAHQGDSY---IVRFLDDPGPTVLPLPEDLYSTALNAVCGSWCLEKH 379
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig123.1752.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JK47_9PHAE7.260e-1539.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KL08_9PHAE1.660e-1439.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig123contigF-serratus_M_contig123:329812..330416 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size605
Cds size381
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig123.1752.1prot_F-serratus_M_contig123.1752.1Fucus serratus malepolypeptideF-serratus_M_contig123 329856..330236 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929144.819233-UTR-F-serratus_M_contig123:329811..3298551622929144.819233-UTR-F-serratus_M_contig123:329811..329855Fucus serratus maleUTRF-serratus_M_contig123 329812..329855 +
1690962723.5692182-UTR-F-serratus_M_contig123:329811..3298551690962723.5692182-UTR-F-serratus_M_contig123:329811..329855Fucus serratus maleUTRF-serratus_M_contig123 329812..329855 +
1622929144.8548868-UTR-F-serratus_M_contig123:330236..3304161622929144.8548868-UTR-F-serratus_M_contig123:330236..330416Fucus serratus maleUTRF-serratus_M_contig123 330237..330416 +
1690962723.589528-UTR-F-serratus_M_contig123:330236..3304161690962723.589528-UTR-F-serratus_M_contig123:330236..330416Fucus serratus maleUTRF-serratus_M_contig123 330237..330416 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929144.8349905-CDS-F-serratus_M_contig123:329855..3302361622929144.8349905-CDS-F-serratus_M_contig123:329855..330236Fucus serratus maleCDSF-serratus_M_contig123 329856..330236 +
1690962723.579857-CDS-F-serratus_M_contig123:329855..3302361690962723.579857-CDS-F-serratus_M_contig123:329855..330236Fucus serratus maleCDSF-serratus_M_contig123 329856..330236 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig123.1752.1

>prot_F-serratus_M_contig123.1752.1 ID=prot_F-serratus_M_contig123.1752.1|Name=mRNA_F-serratus_M_contig123.1752.1|organism=Fucus serratus male|type=polypeptide|length=127bp
MRRAQAHRAYWRDQNKYYLEQGYHLVSYSTWEKKFRGRRIPLRAFFWWKN
HQGWWLGQVKAWDRDIYDQYFVRFHDDPGPAQVMLAEEFYTTDVDGVPGS
WCLQSHIREGIFRDTDMSRDADFQES*
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mRNA from alignment at F-serratus_M_contig123:329812..330416+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig123.1752.1 ID=mRNA_F-serratus_M_contig123.1752.1|Name=mRNA_F-serratus_M_contig123.1752.1|organism=Fucus serratus male|type=mRNA|length=605bp|location=Sequence derived from alignment at F-serratus_M_contig123:329812..330416+ (Fucus serratus male)
CAACTCCAAGACAAGTAAgGGGTGTAAACTCCAAGTATCGTGCTATGCGT
AGAGCCCAGGCACACAGAGCCTACTGGCGTGATCAGAACAAGTACTACCT
AGAACAAGGATATCATCTAGTGTCATACAGTACTTGGGAAAAGAAATTCA
GAGGGCGGAGGATACCGCTTCGGGCCTTCTTTTGGTGGAAAAACCATCAA
GGCTGGTGGTTGGGACAGGTGAAGGCATGGGACAGAGACATATATGATCA
ATATTTCGTGAGATTCCACGATGATCCAGGGCCAGCACAAGTAATGCTAG
CGGAAGAATTCTATACAACAGATGTTGATGGTGTACCAGGATCCTGGTGC
TTACAATCGCATATACGGGAAGGTATTTTCCGCGATACCGACATGTCGCG
TGATGCCGATTTCCAGGAGAGCTGACGAGACCAAGACGAAGAGGGACAAC
AACGCACCGGAGCAAGCGCTTCTGGGAGGCCCAGTATAAATCGTTTTGAC
AGGTAGACTTCGAGCCTCGAGAGCAAGACCAAGAACGCCCTCTCCCCAGT
TCAGCGTAGAAGACGTTTACGGGCGGAACGCTGTCAGAAGACCGCCCCAT
CTTCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig123:329812..330416+

>mRNA_F-serratus_M_contig123.1752.1 ID=mRNA_F-serratus_M_contig123.1752.1|Name=mRNA_F-serratus_M_contig123.1752.1|organism=Fucus serratus male|type=CDS|length=762bp|location=Sequence derived from alignment at F-serratus_M_contig123:329812..330416+ (Fucus serratus male)
ATGCGTAGAGCCCAGGCACACAGAGCCTACTGGCGTGATCAGAACAAGTA
CTACCTAGAACAAGGATATCATCTAGTGTCATACAGTACTTGGGAAAAGA
AATTCAGAGGGCGGAGGATACCGCTTCGGGCCTTCTTTTGGTGGAAAAAC
CATCAAGGCTGGTGGTTGGGACAGGTGAAGGCATGGGACAGAGACATATA
TGATCAATATTTCGTGAGATTCCACGATGATCCAGGGCCAGCACAAGTAA
TGCTAGCGGAAGAATTCTATACAACAGATGTTGATGGTGTACCAGGATCC
TGGTGCTTACAATCGCATATACGGGAAGGTATTTTCCGCGATACCGACAT
GTCGCGTGATGCCGATTTCCAGGAGAGCTGAATGCGTAGAGCCCAGGCAC
ACAGAGCCTACTGGCGTGATCAGAACAAGTACTACCTAGAACAAGGATAT
CATCTAGTGTCATACAGTACTTGGGAAAAGAAATTCAGAGGGCGGAGGAT
ACCGCTTCGGGCCTTCTTTTGGTGGAAAAACCATCAAGGCTGGTGGTTGG
GACAGGTGAAGGCATGGGACAGAGACATATATGATCAATATTTCGTGAGA
TTCCACGATGATCCAGGGCCAGCACAAGTAATGCTAGCGGAAGAATTCTA
TACAACAGATGTTGATGGTGTACCAGGATCCTGGTGCTTACAATCGCATA
TACGGGAAGGTATTTTCCGCGATACCGACATGTCGCGTGATGCCGATTTC
CAGGAGAGCTGA
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