mRNA_F-serratus_M_contig123.1751.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig123.1751.1
Unique NamemRNA_F-serratus_M_contig123.1751.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig123.1751.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig123contigF-serratus_M_contig123:318724..319201 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size478
Cds size450
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929144.739044-UTR-F-serratus_M_contig123:318723..3187511622929144.739044-UTR-F-serratus_M_contig123:318723..318751Fucus serratus maleUTRF-serratus_M_contig123 318724..318751 +
1690962723.5506516-UTR-F-serratus_M_contig123:318723..3187511690962723.5506516-UTR-F-serratus_M_contig123:318723..318751Fucus serratus maleUTRF-serratus_M_contig123 318724..318751 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929144.76905-CDS-F-serratus_M_contig123:318751..3192011622929144.76905-CDS-F-serratus_M_contig123:318751..319201Fucus serratus maleCDSF-serratus_M_contig123 318752..319201 +
1690962723.559891-CDS-F-serratus_M_contig123:318751..3192011690962723.559891-CDS-F-serratus_M_contig123:318751..319201Fucus serratus maleCDSF-serratus_M_contig123 318752..319201 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig123.1751.1prot_F-serratus_M_contig123.1751.1Fucus serratus malepolypeptideF-serratus_M_contig123 318752..319201 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig123.1751.1

>prot_F-serratus_M_contig123.1751.1 ID=prot_F-serratus_M_contig123.1751.1|Name=mRNA_F-serratus_M_contig123.1751.1|organism=Fucus serratus male|type=polypeptide|length=150bp
MLIGQYTTPPVLTMWELIAVWTRRHKSIEIAEIVAAHSLDKMKTFLADHE
LTTWRRENGFDLQPVVIGKPPPTRAEDNACLRLELLKLQGAFSASAKLSD
SPLDVRTNYEDNKHDMNNEPEQEPKPSPSADPDSETTGERSTPQGGNWEA
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mRNA from alignment at F-serratus_M_contig123:318724..319201+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig123.1751.1 ID=mRNA_F-serratus_M_contig123.1751.1|Name=mRNA_F-serratus_M_contig123.1751.1|organism=Fucus serratus male|type=mRNA|length=478bp|location=Sequence derived from alignment at F-serratus_M_contig123:318724..319201+ (Fucus serratus male)
AAACGTAAGGACGTCGTCATTGGGGGGGATGTTGATTGGTCAATACACAA
CTCCTCCTGTCCTAACTATGTGGGAGTTGATAGCAGTATGGACTCGCAGA
CATAAATCGATCGAGATCGCCGAAATTGTTGCTGCTCACAGCCTGGATAA
GATGAAGACTTTCCTCGCAGACCACGAGCTGACAACCTGGCGCAGGGAAA
ACGGTTTTGATCTCCAGCCAGTAGTGATCGGTAAACCCCCTCCTACGCGA
GCAGAGGACAATGCATGTCTACGGCTTGAACTACTGAAGTTGCAAGGTGC
ATTTTCAGCATCAGCAAAACTTTCCGATTCGCCGCTTGATGTGCGTACTA
ATTATGAAGACAACAAACATGACATGAACAACGAGCCTGAGCAGGAGCCC
AAACCATCACCATCAGCTGACCCGGACAGCGAAACAACCGGAGAACGGAG
TACCCCGCAAGGGGGAAATTGGGAGGCT
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Coding sequence (CDS) from alignment at F-serratus_M_contig123:318724..319201+

>mRNA_F-serratus_M_contig123.1751.1 ID=mRNA_F-serratus_M_contig123.1751.1|Name=mRNA_F-serratus_M_contig123.1751.1|organism=Fucus serratus male|type=CDS|length=900bp|location=Sequence derived from alignment at F-serratus_M_contig123:318724..319201+ (Fucus serratus male)
ATGTTGATTGGTCAATACACAACTCCTCCTGTCCTAACTATGTGGGAGTT
GATAGCAGTATGGACTCGCAGACATAAATCGATCGAGATCGCCGAAATTG
TTGCTGCTCACAGCCTGGATAAGATGAAGACTTTCCTCGCAGACCACGAG
CTGACAACCTGGCGCAGGGAAAACGGTTTTGATCTCCAGCCAGTAGTGAT
CGGTAAACCCCCTCCTACGCGAGCAGAGGACAATGCATGTCTACGGCTTG
AACTACTGAAGTTGCAAGGTGCATTTTCAGCATCAGCAAAACTTTCCGAT
TCGCCGCTTGATGTGCGTACTAATTATGAAGACAACAAACATGACATGAA
CAACGAGCCTGAGCAGGAGCCCAAACCATCACCATCAGCTGACCCGGACA
GCGAAACAACCGGAGAACGGAGTACCCCGCAAGGGGGAAATTGGGAGGCT
ATGTTGATTGGTCAATACACAACTCCTCCTGTCCTAACTATGTGGGAGTT
GATAGCAGTATGGACTCGCAGACATAAATCGATCGAGATCGCCGAAATTG
TTGCTGCTCACAGCCTGGATAAGATGAAGACTTTCCTCGCAGACCACGAG
CTGACAACCTGGCGCAGGGAAAACGGTTTTGATCTCCAGCCAGTAGTGAT
CGGTAAACCCCCTCCTACGCGAGCAGAGGACAATGCATGTCTACGGCTTG
AACTACTGAAGTTGCAAGGTGCATTTTCAGCATCAGCAAAACTTTCCGAT
TCGCCGCTTGATGTGCGTACTAATTATGAAGACAACAAACATGACATGAA
CAACGAGCCTGAGCAGGAGCCCAAACCATCACCATCAGCTGACCCGGACA
GCGAAACAACCGGAGAACGGAGTACCCCGCAAGGGGGAAATTGGGAGGCT
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