mRNA_F-serratus_M_contig123.1749.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig123.1749.1
Unique NamemRNA_F-serratus_M_contig123.1749.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig123.1749.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig123contigF-serratus_M_contig123:206499..206851 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size353
Cds size315
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929144.5994062-CDS-F-serratus_M_contig123:206498..2068131622929144.5994062-CDS-F-serratus_M_contig123:206498..206813Fucus serratus maleCDSF-serratus_M_contig123 206499..206813 +
1690962723.5345035-CDS-F-serratus_M_contig123:206498..2068131690962723.5345035-CDS-F-serratus_M_contig123:206498..206813Fucus serratus maleCDSF-serratus_M_contig123 206499..206813 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929144.620336-UTR-F-serratus_M_contig123:206813..2068511622929144.620336-UTR-F-serratus_M_contig123:206813..206851Fucus serratus maleUTRF-serratus_M_contig123 206814..206851 +
1690962723.5428264-UTR-F-serratus_M_contig123:206813..2068511690962723.5428264-UTR-F-serratus_M_contig123:206813..206851Fucus serratus maleUTRF-serratus_M_contig123 206814..206851 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig123.1749.1prot_F-serratus_M_contig123.1749.1Fucus serratus malepolypeptideF-serratus_M_contig123 206499..206813 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig123.1749.1

>prot_F-serratus_M_contig123.1749.1 ID=prot_F-serratus_M_contig123.1749.1|Name=mRNA_F-serratus_M_contig123.1749.1|organism=Fucus serratus male|type=polypeptide|length=105bp
MYQVDNTGPENFRCNRGNQNRSKVIYGYKERDRKELVDVDIKSVVSRYRD
VAGSLFYLNTFIIYFQKTAFAIRVPGLVSTILFFVSVHNNTILMGYNILV
VVYP*
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mRNA from alignment at F-serratus_M_contig123:206499..206851+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig123.1749.1 ID=mRNA_F-serratus_M_contig123.1749.1|Name=mRNA_F-serratus_M_contig123.1749.1|organism=Fucus serratus male|type=mRNA|length=353bp|location=Sequence derived from alignment at F-serratus_M_contig123:206499..206851+ (Fucus serratus male)
ATGTACCAGGTAGACAATACAGGGCCTGAGAATTTTCGTTGCAACAGGGG
CAACCAAAATCGCTCAAAGGTTATTTATGGTTACAAGGAAAGGGATAGAA
AAGAACTCGTCGATGTTGATATTAAATCGGTGGTTTCTCGTTATCGCGAC
GTAGCGGGATCCCTCTTTTATCTGAACACATTCATTATTTATTTTCAAAA
GACGGCGTTCGCGATACGGGTGCCGGGGTTGGTTTCCACCATTCTTTTTT
TTGTATCGGTACACAATAATACTATATTGATGGGTTATAATATACTCGTC
GTCGTGTATCCTTAGCGAGCGTACAGCGATAGCTAACCTATTTTTTATTT
ACG
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Coding sequence (CDS) from alignment at F-serratus_M_contig123:206499..206851+

>mRNA_F-serratus_M_contig123.1749.1 ID=mRNA_F-serratus_M_contig123.1749.1|Name=mRNA_F-serratus_M_contig123.1749.1|organism=Fucus serratus male|type=CDS|length=630bp|location=Sequence derived from alignment at F-serratus_M_contig123:206499..206851+ (Fucus serratus male)
ATGTACCAGGTAGACAATACAGGGCCTGAGAATTTTCGTTGCAACAGGGG
CAACCAAAATCGCTCAAAGGTTATTTATGGTTACAAGGAAAGGGATAGAA
AAGAACTCGTCGATGTTGATATTAAATCGGTGGTTTCTCGTTATCGCGAC
GTAGCGGGATCCCTCTTTTATCTGAACACATTCATTATTTATTTTCAAAA
GACGGCGTTCGCGATACGGGTGCCGGGGTTGGTTTCCACCATTCTTTTTT
TTGTATCGGTACACAATAATACTATATTGATGGGTTATAATATACTCGTC
GTCGTGTATCCTTAGATGTACCAGGTAGACAATACAGGGCCTGAGAATTT
TCGTTGCAACAGGGGCAACCAAAATCGCTCAAAGGTTATTTATGGTTACA
AGGAAAGGGATAGAAAAGAACTCGTCGATGTTGATATTAAATCGGTGGTT
TCTCGTTATCGCGACGTAGCGGGATCCCTCTTTTATCTGAACACATTCAT
TATTTATTTTCAAAAGACGGCGTTCGCGATACGGGTGCCGGGGTTGGTTT
CCACCATTCTTTTTTTTGTATCGGTACACAATAATACTATATTGATGGGT
TATAATATACTCGTCGTCGTGTATCCTTAG
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