mRNA_F-serratus_M_contig1221.1717.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1221.1717.1 vs. uniprot
Match: D7FY61_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY61_ECTSI) HSP 1 Score: 181 bits (460), Expect = 5.890e-57 Identity = 93/116 (80.17%), Postives = 104/116 (89.66%), Query Frame = 1
Query: 1 AQVMNGLRTEVVVIPYVGRTFVIVTRMKKLGNLLLATSDGSGEGLAEGSRGRRYRVQVLLGKRDDPLLSLYARQLLEQMKSDKPLLLAVCLKEEGRDTGTFQEVINQVMSLGGWEG 348
A +++G+RTEVVVIPY RTFVIVT+MKKLGNLL+ATSD +G G+ GS GRRY VQVLLG+RDDPLL LYARQ+LEQMKSDKPLLLAVCLKEEGRDT TFQEVINQV+SLGGW G
Sbjct: 20 AWMLSGIRTEVVVIPYADRTFVIVTQMKKLGNLLMATSDAAG-GMMAGSGGRRYSVQVLLGRRDDPLLCLYARQMLEQMKSDKPLLLAVCLKEEGRDTKTFQEVINQVLSLGGWSG 134
BLAST of mRNA_F-serratus_M_contig1221.1717.1 vs. uniprot
Match: A0A835ZGZ8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGZ8_9STRA) HSP 1 Score: 116 bits (290), Expect = 2.440e-31 Identity = 59/109 (54.13%), Postives = 81/109 (74.31%), Query Frame = 1
Query: 10 MNGLRTEVVVIPYVGRTFVIVTRMKKLGNLLLATSDGSGEGLAEGSRGRRYRVQVLLGKRDDPLLSLYARQLLEQMKSDKPLLLAVCLKEEGRDTGTFQEVINQVMSLG 336
++G+ TE+VV + RT V VT+++K+G +LL TS+ SG G GR + V+ LLG+RDDPLL +YARQL EQM+ D PLLLA+ LKEEGRD+ TF V+N+V++LG
Sbjct: 12 LHGITTEIVVQSFSDRTMVNVTQLEKMGTMLLVTSEASGMG------GRSFNVKTLLGRRDDPLLLVYARQLAEQMRLDHPLLLAIALKEEGRDSATFAAVVNKVLALG 114
BLAST of mRNA_F-serratus_M_contig1221.1717.1 vs. uniprot
Match: A0A7S2B7E1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B7E1_9STRA) HSP 1 Score: 100 bits (249), Expect = 5.270e-25 Identity = 52/111 (46.85%), Postives = 78/111 (70.27%), Query Frame = 1
Query: 1 AQVMNGLRTEVVVIPYVGRTFVIVTRMKKLGNLLLATSDGSGEGLAEGSRGRRYRVQVLLGKRDDPLLSLYARQLLEQMKS---DKPLLLAVCLKEEGRDTGTFQEVINQV 324
A +++G+ T++VV + R FV VT+++K+G +L A S+ S G +R+ + L+G+RDDPLL+LYARQL+EQ+ DKPLLLA+ LK+EGR++ TFQ +IN V
Sbjct: 20 AAIIDGIHTDIVVQSFADRVFVTVTQIQKIGTMLFAVSEDSSMGE------KRFDISTLVGRRDDPLLTLYARQLIEQIAKTGCDKPLLLAISLKDEGRESSTFQAIINIV 124
BLAST of mRNA_F-serratus_M_contig1221.1717.1 vs. uniprot
Match: A0A7S2V894_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V894_9STRA) HSP 1 Score: 99.0 bits (245), Expect = 2.960e-24 Identity = 53/116 (45.69%), Postives = 83/116 (71.55%), Query Frame = 1
Query: 1 AQVMNGLRTEVVVIPYVGRTFVIVTRMKKLGNLLLAT--SDGSGEGLAEGSRGRR-YRVQVLLGKRDDPLLSLYARQLLEQMKS--DKPLLLAVCLKEEGRDTGTFQEVINQVMSL 333
A V+NG++TE++V+ + + F+IVT++KK+G L+ ++ + G + G R Y VLLG+RDDPLL +YARQ++E++ S +KPLLL + LK EGRDT TFQEV+N+++ +
Sbjct: 19 ALVINGIKTEILVMYFADKIFIIVTQLKKIGTLVHVQPGNEATSVGASMGDRPLGIYDTSVLLGRRDDPLLLIYARQIMEKICSTLNKPLLLGIALKNEGRDTETFQEVLNELIKM 134
BLAST of mRNA_F-serratus_M_contig1221.1717.1 vs. uniprot
Match: A0A7S2F3L5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F3L5_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 4.270e-21 Identity = 48/116 (41.38%), Postives = 75/116 (64.66%), Query Frame = 1
Query: 1 AQVMNGLRTEVVVIPYVGRTFVIVTRMKKLGNLLLATSDGSGEGLAEGSRGRRYRVQVLLGKRDDPLLSLYARQLLEQMK--SDKPLLLAVCLKEEGRDTGTFQEVINQVMSLGGW 342
A +NG+ T+++V + R FVI+T++KK+G L+ A ++ + G R + VLLG+RDDPL+ +YARQ++EQ+ S PLL++V + EGRD TF+ +IN V+ L W
Sbjct: 39 AMKINGVHTDIIVQVFQDRIFVIITQIKKIGTLVYAVAEETSMG------SRTFTANVLLGRRDDPLVLIYARQMIEQISATSSLPLLMSVSMTPEGRDARTFETIINVVLKLKCW 148
BLAST of mRNA_F-serratus_M_contig1221.1717.1 vs. uniprot
Match: A0A7S1TQ84_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TQ84_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 4.250e-19 Identity = 48/116 (41.38%), Postives = 72/116 (62.07%), Query Frame = 1
Query: 10 MNGLRTEVVVIPYVGRTFVIVTRMKKLGNLLLATSDGSGEGLAEGSRGR-RYRVQVLLGKRDDPLLSLYARQLLEQMKS----DKPLLLAVCLKEEGRDTGTFQEVINQVMSLGGW 342
+ G+ TE+VV + FV++T++KKLG L++ + G G+ + +VLLGKRDDPLL LYARQ+ EQ+ + D+ ++L++ LKE+GR FQE IN V+ L W
Sbjct: 30 IGGIETEIVVQGFQDAIFVVITQLKKLGTLIMTH-------IERGRTGKCLFDARVLLGKRDDPLLVLYARQIAEQISTRTTYDRNVVLSIALKEDGRGPAAFQETINHVLDLPVW 138
BLAST of mRNA_F-serratus_M_contig1221.1717.1 vs. uniprot
Match: A0A482SY11_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SY11_9ARCH) HSP 1 Score: 80.1 bits (196), Expect = 3.960e-17 Identity = 47/100 (47.00%), Postives = 67/100 (67.00%), Query Frame = 1
Query: 34 VVIPYVGRTFVIVTRMKKLGNLLLATSDGSGEGLAEGSRGRRYRVQVLLGKRDDPLLSLYARQLLEQMK--SDKPLLLAVCLKEEGRDTGTFQEVINQVM 327
V+I + FVI+T++ K+G++L A ++ +G G R+ V+ +LG+RDDPLL LYARQL+E++ S K L+LAV LKEEGR FQ VIN+ M
Sbjct: 11 VLIVFSSNVFVIITQINKVGSMLKAWTEPKFDG------GLRFMVENMLGRRDDPLLVLYARQLIERISIISPKQLILAVSLKEEGRGKEHFQNVINRTM 104
BLAST of mRNA_F-serratus_M_contig1221.1717.1 vs. uniprot
Match: A0A7S0CAB8_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CAB8_9STRA) HSP 1 Score: 74.3 bits (181), Expect = 1.480e-14 Identity = 46/120 (38.33%), Postives = 71/120 (59.17%), Query Frame = 1
Query: 10 MNGLRTEVVVIPYVGRTFVIVTRMKKLGNLLLATSDGSGEGLAEGSRGRRYRVQVLLGKRDDPLLSLYARQLLEQMKS-DK-----------PLLLAVCLKEEGRDTGTFQEVINQVMSL 333
+N + TE+++ + RTFV++T++ K+GNLL + + S + + Y V LLG R+D LL +YAR +LE++ DK PLLL + LK+EGR T FQ +I QV+S+
Sbjct: 20 VNQIHTEIMLQRFSDRTFVLITQIGKVGNLLSCSLETSDIDCS-----KTYHVSNLLGNREDSLLGVYARAILEKIVDLDKEQQRSSLTTTVPLLLGIALKKEGRGTEIFQSIIKQVISM 134
BLAST of mRNA_F-serratus_M_contig1221.1717.1 vs. uniprot
Match: A0A4D9CRY9_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CRY9_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 5.670e-14 Identity = 42/110 (38.18%), Postives = 68/110 (61.82%), Query Frame = 1
Query: 10 MNGLRTEVVVIPYVGRTFVIVTRMKKLGNLLLATSDGSGEGLAEGSRGRRYRVQVLLGKRDDPLLSLYARQLLEQMK--SDKPLLLAVCLKEEGRDTGTFQEVINQVMSL 333
+NG+ T+V + + R F+++++ + G ++ A +D S +A + V VLLG+RDDPLL +YARQL+E + S +PLLL++ L+E RD TF++V V L
Sbjct: 20 INGVLTDVAIFNFSDRIFLVISQNARFGTVISAKADDS---VARPGAAPSFDVSVLLGRRDDPLLLIYARQLVETVSRSSSRPLLLSISLRE--RDPSTFEQVAAWVRPL 124
BLAST of mRNA_F-serratus_M_contig1221.1717.1 vs. uniprot
Match: W7T248_9STRA (Proteasome assembly chaperone 3 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T248_9STRA) HSP 1 Score: 72.0 bits (175), Expect = 2.960e-13 Identity = 43/110 (39.09%), Postives = 67/110 (60.91%), Query Frame = 1
Query: 10 MNGLRTEVVVIPYVGRTFVIVTRMKKLGNLLLATSDGSGEGLAEGSRGRRYRVQVLLGKRDDPLLSLYARQLLEQMK--SDKPLLLAVCLKEEGRDTGTFQEVINQVMSL 333
+NG+ T+V + + R F+ +++ + G L+ A +D S +A + V VLLG+RDDPLL +YARQL+E + S +PLLL++ L+E RD TF++V V L
Sbjct: 80 INGVLTDVAIFNFSDRIFLTISQNARFGTLISAKADDS---VARPGAAPSFDVSVLLGRRDDPLLLIYARQLVETVSRSSSRPLLLSISLRE--RDPSTFEQVAAWVRPL 184 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1221.1717.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1221.1717.1 >prot_F-serratus_M_contig1221.1717.1 ID=prot_F-serratus_M_contig1221.1717.1|Name=mRNA_F-serratus_M_contig1221.1717.1|organism=Fucus serratus male|type=polypeptide|length=114bp MNGLRTEVVVIPYVGRTFVIVTRMKKLGNLLLATSDGSGEGLAEGSRGRRback to top mRNA from alignment at F-serratus_M_contig1221:30310..32434- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1221.1717.1 ID=mRNA_F-serratus_M_contig1221.1717.1|Name=mRNA_F-serratus_M_contig1221.1717.1|organism=Fucus serratus male|type=mRNA|length=2125bp|location=Sequence derived from alignment at F-serratus_M_contig1221:30310..32434- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1221:30310..32434- >mRNA_F-serratus_M_contig1221.1717.1 ID=mRNA_F-serratus_M_contig1221.1717.1|Name=mRNA_F-serratus_M_contig1221.1717.1|organism=Fucus serratus male|type=CDS|length=684bp|location=Sequence derived from alignment at F-serratus_M_contig1221:30310..32434- (Fucus serratus male)back to top |