mRNA_F-serratus_M_contig1219.1706.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1219.1706.1
Unique NamemRNA_F-serratus_M_contig1219.1706.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1219.1706.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1219contigF-serratus_M_contig1219:235218..235533 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size318
Cds size303
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929137.0078526-CDS-F-serratus_M_contig1219:235217..2355201622929137.0078526-CDS-F-serratus_M_contig1219:235217..235520Fucus serratus maleCDSF-serratus_M_contig1219 235218..235520 +
1690962719.9595537-CDS-F-serratus_M_contig1219:235217..2355201690962719.9595537-CDS-F-serratus_M_contig1219:235217..235520Fucus serratus maleCDSF-serratus_M_contig1219 235218..235520 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929137.0216453-UTR-F-serratus_M_contig1219:235520..2355331622929137.0216453-UTR-F-serratus_M_contig1219:235520..235533Fucus serratus maleUTRF-serratus_M_contig1219 235521..235533 +
1690962719.9708765-UTR-F-serratus_M_contig1219:235520..2355331690962719.9708765-UTR-F-serratus_M_contig1219:235520..235533Fucus serratus maleUTRF-serratus_M_contig1219 235521..235533 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1219.1706.1prot_F-serratus_M_contig1219.1706.1Fucus serratus malepolypeptideF-serratus_M_contig1219 235218..235520 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1219.1706.1

>prot_F-serratus_M_contig1219.1706.1 ID=prot_F-serratus_M_contig1219.1706.1|Name=mRNA_F-serratus_M_contig1219.1706.1|organism=Fucus serratus male|type=polypeptide|length=101bp
CRLRIGKQVTETIRFAKGSGAQGLLPLERLPGTAAVSWRESRLFIISRTT
QRAGKYFHAEAAGGANLLLGAHALVPNITLALLRRGWRQWREPLEKTIVR
*
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mRNA from alignment at F-serratus_M_contig1219:235218..235533+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1219.1706.1 ID=mRNA_F-serratus_M_contig1219.1706.1|Name=mRNA_F-serratus_M_contig1219.1706.1|organism=Fucus serratus male|type=mRNA|length=316bp|location=Sequence derived from alignment at F-serratus_M_contig1219:235218..235533+ (Fucus serratus male)
TGTCGCCTTCGCATCGGAAAACAAGTGACTGAGACGATCAGGTTCGCGAA
AGGCTCTGGAGCGCAGGGGCTTCTACCGCTGGAACGCTTGCCCGGGACGG
CAGCGGTTTCGTGGAGGGAAAGTAGACTTTTCATCATCTCGCGCACCACC
CAGCGGGCGGGGAAATATTTTCACGCAGAGGCAGCTGGCGGGGCAAATCT
TCTTCTGGGCGCGCACGCATTGGTGCCGAACATAACGCTTGCACTACTAC
GACGAGGGTGGCGGCAATGGAGGGAGCCATTGGAGAAAACCATCGTCCGA
TAGACCCGGATGCCGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1219:235218..235533+

>mRNA_F-serratus_M_contig1219.1706.1 ID=mRNA_F-serratus_M_contig1219.1706.1|Name=mRNA_F-serratus_M_contig1219.1706.1|organism=Fucus serratus male|type=CDS|length=606bp|location=Sequence derived from alignment at F-serratus_M_contig1219:235218..235533+ (Fucus serratus male)
TGTCGCCTTCGCATCGGAAAACAAGTGACTGAGACGATCAGGTTCGCGAA
AGGCTCTGGAGCGCAGGGGCTTCTACCGCTGGAACGCTTGCCCGGGACGG
CAGCGGTTTCGTGGAGGGAAAGTAGACTTTTCATCATCTCGCGCACCACC
CAGCGGGCGGGGAAATATTTTCACGCAGAGGCAGCTGGCGGGGCAAATCT
TCTTCTGGGCGCGCACGCATTGGTGCCGAACATAACGCTTGCACTACTAC
GACGAGGGTGGCGGCAATGGAGGGAGCCATTGGAGAAAACCATCGTCCGA
TAGTGTCGCCTTCGCATCGGAAAACAAGTGACTGAGACGATCAGGTTCGC
GAAAGGCTCTGGAGCGCAGGGGCTTCTACCGCTGGAACGCTTGCCCGGGA
CGGCAGCGGTTTCGTGGAGGGAAAGTAGACTTTTCATCATCTCGCGCACC
ACCCAGCGGGCGGGGAAATATTTTCACGCAGAGGCAGCTGGCGGGGCAAA
TCTTCTTCTGGGCGCGCACGCATTGGTGCCGAACATAACGCTTGCACTAC
TACGACGAGGGTGGCGGCAATGGAGGGAGCCATTGGAGAAAACCATCGTC
CGATAG
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