mRNA_F-serratus_M_contig1219.1701.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1219.1701.1 vs. uniprot
Match: D8LCG4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCG4_ECTSI) HSP 1 Score: 335 bits (860), Expect = 3.160e-92 Identity = 285/689 (41.36%), Postives = 341/689 (49.49%), Query Frame = 1
Query: 67 SMDSTTIEATAWAIRSPDELTLELQLACVHPRVCVLAASAGIGVPDPEDSSSILNHRMDRWAKFSAWYYSREDGESITPQREALLRDEVLAATADEIVNARMQDEKILDDDSFDVSHFLHWYCEGGALSRQDFRRRRVEELLQSRRLIATEVLGYLPSPFLFREIPQLLPPPLPPSVERFQLYPSRSPEAFSWAE--VSRWYREEDLNGEDDALRAEEHAGQTAAFLLDAARAEESNNREVLERRVARWEDFRSSLMREAEAELEGDPFGVGEGGWQYHAAPSSWTELEFPGFEAGSGLENKDELLDALEVARKEVREEKERVAEVRXXXXXXXXXXXXXXXXXXXXXERLRWMRNTEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQERLAKENALYKDLCSQEHAVVAAAXXXXXXXXRRESEASEMFREDGLSRQIEAEERAAETALRERDAYLRNLYTPYAPLWQRMWNTLSSEVEQGSE----------------------GCKGD----------------------------DDKMRSRPTGWWQGAGAPQIWRGP-----LIAHSNVSKPR--------PGPRFVPHAQTILDGLDLDTQAFIVGRLSREFLGVLGLPRESVRDMYEEGRQTARDTGALVDSIQLGRIFTMFEDGQVCENLVSVEP 1938
S+ + EA AW RSPDEL LELQLACV PRVC LAASA IGVPDPED+SS L ++ R ++ +P R SF GG R + R LPS F RS W+ RW+ +E L ED+A++A E AGQ AA LL+ ARAEE N + LE RVARWEDFRS LMR AEAEL DPF VGEG WQY A SW EL++ GFE G+GLENKDE+ DALE+ARKE +EE+ERVAEVR XXXXXXXXX RLRWMR T++ XXXXXXXXXXXXXXXXXXX LQE+ AKE+A K+ + A A A R E+E M ED SRQ+E E AAE LR+R+AYL LYT + PLW + W S QG E G +GD D + RPT WW+GA AP IW GP A + +P PG RFVP Q +LDGL+ QA VGRLSRE+L +LGLP ES+RDM+++ T ++ A+VD IQLGR+FTMFE +V +NLV + P
Sbjct: 2453 SLSGSQKEAAAWEPRSPDELNLELQLACVQPRVCTLAASARIGVPDPEDASSTLPNKKLRTGTVR---------KAPSPAR------------------------------SFGGGGRRSCSSRGGTWPRSCWPTCR------------------LPSCF------------------------GRS---LGWSRHLPPRWHTKEALEAEDEAMQAGERAGQRAA-LLEVARAEEGQN-QSLEERVARWEDFRSELMRTAEAELNSDPFRVGEGEWQYSATLLSWRELKYLGFEDGTGLENKDEIHDALEIARKEAQEERERVAEVRRQREIARQTRLEXXXXXXXXXXRLRWMRETKERRRLVQQHMANLKXXXXXXXXXXXXXXXXXXXLAVMREEKRFLQEQQAKEDAKAKECRLLKMAAAAVASMEEEVRRRLEAEMEAMALEDNRSRQVEDETLAAEAVLRDREAYLSQLYTSFVPLWGKHWEDGSEAPLQGLEAQGDRLEAVLGGGPRLAEEEVVGVEGDVDDCHLNAKFDGDNVHLDGVDGRDQANDDGGTKQRPTMWWRGADAPHIWTGPRKPGAAPAAAGCRRPATTMNGKLTPGARFVPAEQALLDGLE--PQAMTVGRLSREYLTLLGLPYESIRDMFQKDSWTVKNGNAMVDGIQLGRVFTMFEKEEVRDNLVPIVP 3053
BLAST of mRNA_F-serratus_M_contig1219.1701.1 vs. uniprot
Match: A0A836CD35_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD35_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 1.710e-12 Identity = 173/561 (30.84%), Postives = 232/561 (41.35%), Query Frame = 1
Query: 418 FLHWY--CEGGALSRQDFRRRRVEELLQSRRLIAT----EVLGYLPSPFLFREIPQLLPPPLPP-SVERFQLYPSRSPEAFSWAEVSRWYREEDLNGEDDALRAEEHAGQTAAFLLDAARAEESNNREVLERRVARWEDFRSSLMREAEAEL-EGDP-------------FGVGEGGWQ--------YHAAPSSWTELEFPGFEAGSGLENKDELLDALEVARKEVREEKERVAEVRXXXXXXXXXXXXXXXXXXXXXERLRWMRNTEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQERLAKENALYKDLCSQEHAVVAAAXXXXXXXXRRESEASE---------MFREDGLSRQIEAEERAAETALRERDAYLRNLYTPYAPLWQRMWN-TLSSEVEQGS-EGCKGDDDKM--RSRPTGWWQGAGAPQIWRGPLIAHSNVSKPRPGPRFVPHAQTILDGLDLDTQAFIVGRLSREFLGVLGLPRESVRDMYEEGR--------------QTARDTGAL--VDSIQLGRIFTMFEDGQVCENLV 1926
F WY GA R FR+ E LL RRL+A + G+ PSP LF + P+L P P PP R +L+ S S ++W EV W+ L +D A+ A + LE R+ WED RS M + EL DP G G GG + + A L + GSGLEN DEL DA++ A+ E +EE RV R X XXX XXXXXXXXX R WMR XXXXXXXXXXXXXXXX A+ L K H+ +AAA RR ++A M E+ S Q+E EE E +E+ + LR LYTP+APL + + +V +G+ EG G D + R G WQ A RG A P P Q +G + T SR +L +LG+ ++R + +EGR + + D A + +QL R++ +FE ++ L+
Sbjct: 2719 FARWYGGSGAGAAVRAAFRKNAAEVLLMRRRLVAMLPPLALGGWTPSPCLFPDAPRLAPLPPPPLRPARHRLFESWSNATYTWQEVLVWFSASVLAQDDKAMAAAQ-----------------------LECRIMAWEDRRSRHMLASAQELANNDPGTIQEPSPDLQTGAGTGVGGRRGRLTRFASFDAPADELANLAALRWAEGSGLENDDELADAIDQAQHEAQEEIARVRAKREERRQEXLXXXEXXXXXXXXXXRQIWMRKXXXXXXXXXXXXXXXXXXX-------------------------------AQAAELTKMRAEDGHSALAAAVEAAAQLARRVAQAETDRAAAEQALMEIEEWHSAQVEREEAQREAHRQEQLSILRELYTPHAPLDKHLARLNWDYDVPRGAWEGGDGWDGLLWRRGDTAGGWQRARG----RGGTAAALR-------PLTTPLLQGAAEGGAVAT----ADPPSRRYLELLGVTPSAIRQLRKEGRADRSSSAEQLQGPFKLSADARAATTLSEMQLARLYDIFERDEIMTPLL 3210 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1219.1701.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1219.1701.1 >prot_F-serratus_M_contig1219.1701.1 ID=prot_F-serratus_M_contig1219.1701.1|Name=mRNA_F-serratus_M_contig1219.1701.1|organism=Fucus serratus male|type=polypeptide|length=803bp MDSTTIEATAWAIRSPDELTLELQLACVHPRVCVLAASAGIGVPDPEDSSback to top mRNA from alignment at F-serratus_M_contig1219:177852..195670- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1219.1701.1 ID=mRNA_F-serratus_M_contig1219.1701.1|Name=mRNA_F-serratus_M_contig1219.1701.1|organism=Fucus serratus male|type=mRNA|length=17819bp|location=Sequence derived from alignment at F-serratus_M_contig1219:177852..195670- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1219:177852..195670- >mRNA_F-serratus_M_contig1219.1701.1 ID=mRNA_F-serratus_M_contig1219.1701.1|Name=mRNA_F-serratus_M_contig1219.1701.1|organism=Fucus serratus male|type=CDS|length=4818bp|location=Sequence derived from alignment at F-serratus_M_contig1219:177852..195670- (Fucus serratus male)back to top |