mRNA_F-serratus_M_contig1219.1698.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1219.1698.1
Unique NamemRNA_F-serratus_M_contig1219.1698.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1219.1698.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1219contigF-serratus_M_contig1219:84819..85788 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size970
Cds size504
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929136.9478633-CDS-F-serratus_M_contig1219:84818..853221622929136.9478633-CDS-F-serratus_M_contig1219:84818..85322Fucus serratus maleCDSF-serratus_M_contig1219 84819..85322 +
1690962719.9287372-CDS-F-serratus_M_contig1219:84818..853221690962719.9287372-CDS-F-serratus_M_contig1219:84818..85322Fucus serratus maleCDSF-serratus_M_contig1219 84819..85322 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929136.966544-UTR-F-serratus_M_contig1219:85322..857881622929136.966544-UTR-F-serratus_M_contig1219:85322..85788Fucus serratus maleUTRF-serratus_M_contig1219 85323..85788 +
1690962719.9485652-UTR-F-serratus_M_contig1219:85322..857881690962719.9485652-UTR-F-serratus_M_contig1219:85322..85788Fucus serratus maleUTRF-serratus_M_contig1219 85323..85788 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1219.1698.1prot_F-serratus_M_contig1219.1698.1Fucus serratus malepolypeptideF-serratus_M_contig1219 84819..85322 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1219.1698.1

>prot_F-serratus_M_contig1219.1698.1 ID=prot_F-serratus_M_contig1219.1698.1|Name=mRNA_F-serratus_M_contig1219.1698.1|organism=Fucus serratus male|type=polypeptide|length=168bp
SRSAAAEVANVQDSWSTLQGPSRQRKDRCFCRRRLNYTTVRQVQPTTYVL
EFFNRKTYPPLDRPVKHPSRSPCQYTFWNCLRLRWTRTPQQRPVYWSPGN
YCTLHQRLVPVDNPPRRTTVVYLPTSTAPFSLSVPATLPLYPYDACHRPR
SRFSSLPNMRLRLNPLS*
back to top

mRNA from alignment at F-serratus_M_contig1219:84819..85788+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1219.1698.1 ID=mRNA_F-serratus_M_contig1219.1698.1|Name=mRNA_F-serratus_M_contig1219.1698.1|organism=Fucus serratus male|type=mRNA|length=970bp|location=Sequence derived from alignment at F-serratus_M_contig1219:84819..85788+ (Fucus serratus male)
AGCAGATCGGCAGCGGCGGAAGTGGCGAACGTACAAGATTCCTGGAGCAC
TCTCCAAGGACCCTCAAGGCAGCGGAAGGACAGATGCTTTTGCAGACGTC
GTCTCAACTACACCACTGTTCGTCAGGTTCAACCAACAACCTATGTCTTG
GAGTTCTTCAACCGGAAAACTTACCCACCTTTGGACCGCCCTGTCAAGCA
CCCCAGTAGGAGCCCTTGCCAATACACCTTCTGGAATTGCCTACGCCTCC
GCTGGACACGGACACCCCAACAACGCCCCGTCTACTGGAGCCCTGGCAAT
TATTGCACGCTTCACCAACGCCTCGTACCCGTGGACAATCCCCCACGTCG
CACCACCGTGGTATACCTGCCAACATCAACCGCCCCATTTTCCTTATCCG
TGCCAGCGACTCTACCCCTATACCCGTACGATGCATGCCACAGACCCAGG
AGCAGATTCAGCAGCCTTCCAAACATGCGGCTCCGCCTAAACCCGCTGTC
CTAGACAATGTTTCTCAGCTGCTGCTCCAGACCGACGCTTTCGACCCCCA
TCTCACCCATGAGAGATACTTCGGGGTTCGTTCCGCAGCAGCCTTACCTA
CAGCCACCGCCTTCCAATCACACGCACCCCTCTTCGAAAGGAAAGCGCAA
AAGCCTCTTCGCCGACCGTCAGTGCAGTCATCAACGCCACCCGGAAACTC
TCCGACAACGATTCACAAGACTCTTCATCGGCAACTCCAAACAACAGCAC
AACACTAAGCGACGTCCCACATAAGAATAACTAGGACTGCGGCACAAGGA
AATTGCCGACGAACTCTCCGCACATGTCAATAAACACGCCCTGCGACCCG
GCATATTAAATCCGCGTTGCGATCCGGAAACATTTGGCACCCGCCTTCAC
CTGCGACTCTTCCCGTCCCCACAGCCGCCCCAAGCTCTCCGCGCCCATAA
GGCTTACCCCGGCCCTGGAC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1219:84819..85788+

>mRNA_F-serratus_M_contig1219.1698.1 ID=mRNA_F-serratus_M_contig1219.1698.1|Name=mRNA_F-serratus_M_contig1219.1698.1|organism=Fucus serratus male|type=CDS|length=1008bp|location=Sequence derived from alignment at F-serratus_M_contig1219:84819..85788+ (Fucus serratus male)
AGCAGATCGGCAGCGGCGGAAGTGGCGAACGTACAAGATTCCTGGAGCAC
TCTCCAAGGACCCTCAAGGCAGCGGAAGGACAGATGCTTTTGCAGACGTC
GTCTCAACTACACCACTGTTCGTCAGGTTCAACCAACAACCTATGTCTTG
GAGTTCTTCAACCGGAAAACTTACCCACCTTTGGACCGCCCTGTCAAGCA
CCCCAGTAGGAGCCCTTGCCAATACACCTTCTGGAATTGCCTACGCCTCC
GCTGGACACGGACACCCCAACAACGCCCCGTCTACTGGAGCCCTGGCAAT
TATTGCACGCTTCACCAACGCCTCGTACCCGTGGACAATCCCCCACGTCG
CACCACCGTGGTATACCTGCCAACATCAACCGCCCCATTTTCCTTATCCG
TGCCAGCGACTCTACCCCTATACCCGTACGATGCATGCCACAGACCCAGG
AGCAGATTCAGCAGCCTTCCAAACATGCGGCTCCGCCTAAACCCGCTGTC
CTAGAGCAGATCGGCAGCGGCGGAAGTGGCGAACGTACAAGATTCCTGGA
GCACTCTCCAAGGACCCTCAAGGCAGCGGAAGGACAGATGCTTTTGCAGA
CGTCGTCTCAACTACACCACTGTTCGTCAGGTTCAACCAACAACCTATGT
CTTGGAGTTCTTCAACCGGAAAACTTACCCACCTTTGGACCGCCCTGTCA
AGCACCCCAGTAGGAGCCCTTGCCAATACACCTTCTGGAATTGCCTACGC
CTCCGCTGGACACGGACACCCCAACAACGCCCCGTCTACTGGAGCCCTGG
CAATTATTGCACGCTTCACCAACGCCTCGTACCCGTGGACAATCCCCCAC
GTCGCACCACCGTGGTATACCTGCCAACATCAACCGCCCCATTTTCCTTA
TCCGTGCCAGCGACTCTACCCCTATACCCGTACGATGCATGCCACAGACC
CAGGAGCAGATTCAGCAGCCTTCCAAACATGCGGCTCCGCCTAAACCCGC
TGTCCTAG
back to top