mRNA_F-serratus_M_contig1217.1694.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1217.1694.1
Unique NamemRNA_F-serratus_M_contig1217.1694.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1217.1694.1 vs. uniprot
Match: D7G088_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G088_ECTSI)

HSP 1 Score: 246 bits (629), Expect = 6.670e-78
Identity = 136/225 (60.44%), Postives = 162/225 (72.00%), Query Frame = 1 
Query:  187 RPPKRVTFSSYNLVLGRAQDYDRTSLEEPTPQMHSMATRQQNTPGV---------WPQITTPHAHEVSTTEGGHANFCGMWRRSHGFNWAALLELTGVPKDAVPEQQLEKMQASSVVHLIEHDDVSFRLLVHSDAGSTTQDQHFFIGGQPRPNPCSKTPSSTLANMRWTRNGQALVLTSVDAATGDEMTVSRHLANRGMVMVQHYRARCARTEDAAEAITIFRRI 834
            RP KRV+FS+   VLGRAQDYDRTS E  TP +      ++  P V           Q   PH       E  HANFCGMWRRSHGF+W +LLE +GV K  V EQ   +MQ+SSVVHLI+HD  SFRL+VHSD+G+T QDQHFFIGGQPRP+P +   ++TL+NMRWT+NGQ LVLTSVDAATGDEMTVSRHLA +G V+VQHY AR A+T + AEA+TIFRR+
Sbjct:   50 RPAKRVSFSANECVLGRAQDYDRTSCEVQTPLVRRRIIPKRPAPVVIIPSDEEAKQQQDQEPH-------EQQHANFCGMWRRSHGFHWESLLEFSGVDKADVAEQAA-RMQSSSVVHLIDHDANSFRLVVHSDSGNT-QDQHFFIGGQPRPSPTNAPSTATLSNMRWTKNGQGLVLTSVDAATGDEMTVSRHLAAQGSVIVQHYAARRAKTGETAEAVTIFRRM 265
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BLAST of mRNA_F-serratus_M_contig1217.1694.1 vs. uniprot
Match: A0A835YHH8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHH8_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 1.940e-5
Identity = 42/115 (36.52%), Postives = 60/115 (52.17%), Query Frame = 1 
Query:  385 NFCGMWRRSHGFNWAALLELTGVPKDAVPEQQLEKMQASSVVHLIEHDDVSFRLLVHSDAGSTTQDQHFFIGGQPRPNPCSKTPSSTLANM-RWTRNGQA--LVLTS--VDAATG 714
            NF G+W+RS    +  LL  +GVP+ A      ++      VH+I+HDD  FRL++ +  G    D H+ IG +PR      T    + +    T NG+A  LVLTS  V+A TG
Sbjct:  203 NFSGIWKRSRIEGFIELLAFSGVPRKAALAAAQKRP-----VHIIDHDDDYFRLIIKN--GLVKSDAHYIIGDEPRIEKSGATDYEVVLDWGHGTANGRAESLVLTSISVNAKTG 310
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1217.1694.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G088_ECTSI6.670e-7860.44Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YHH8_9STRA1.940e-536.52Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1217contigF-serratus_M_contig1217:168635..171252 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-24_000330.1
Exons2
Model size837
Cds size837
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929136.361815-CDS-F-serratus_M_contig1217:168634..1691111622929136.361815-CDS-F-serratus_M_contig1217:168634..169111Fucus serratus maleCDSF-serratus_M_contig1217 168635..169111 +
1690962719.6077487-CDS-F-serratus_M_contig1217:168634..1691111690962719.6077487-CDS-F-serratus_M_contig1217:168634..169111Fucus serratus maleCDSF-serratus_M_contig1217 168635..169111 +
1622929136.376712-CDS-F-serratus_M_contig1217:170892..1712521622929136.376712-CDS-F-serratus_M_contig1217:170892..171252Fucus serratus maleCDSF-serratus_M_contig1217 170893..171252 +
1690962719.6169841-CDS-F-serratus_M_contig1217:170892..1712521690962719.6169841-CDS-F-serratus_M_contig1217:170892..171252Fucus serratus maleCDSF-serratus_M_contig1217 170893..171252 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1217.1694.1prot_F-serratus_M_contig1217.1694.1Fucus serratus malepolypeptideF-serratus_M_contig1217 168635..171252 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1217.1694.1

>prot_F-serratus_M_contig1217.1694.1 ID=prot_F-serratus_M_contig1217.1694.1|Name=mRNA_F-serratus_M_contig1217.1694.1|organism=Fucus serratus male|type=polypeptide|length=279bp
GDQASIDEGYLALLTILKHRRTTAESDDMCRTSVAGMQQPSSSSFSSPKR
QAKRSRDIGDGTRPPKRVTFSSYNLVLGRAQDYDRTSLEEPTPQMHSMAT
RQQNTPGVWPQITTPHAHEVSTTEGGHANFCGMWRRSHGFNWAALLELTG
VPKDAVPEQQLEKMQASSVVHLIEHDDVSFRLLVHSDAGSTTQDQHFFIG
GQPRPNPCSKTPSSTLANMRWTRNGQALVLTSVDAATGDEMTVSRHLANR
GMVMVQHYRARCARTEDAAEAITIFRRI*
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mRNA from alignment at F-serratus_M_contig1217:168635..171252+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1217.1694.1 ID=mRNA_F-serratus_M_contig1217.1694.1|Name=mRNA_F-serratus_M_contig1217.1694.1|organism=Fucus serratus male|type=mRNA|length=2618bp|location=Sequence derived from alignment at F-serratus_M_contig1217:168635..171252+ (Fucus serratus male)
GGTGATCAAGCCAGCATCGACGAGGGATACCTAGCGTTGCTTACTATCCT
GAAACACAGAAGAACCACGGCGGAATCGGACGATATGTGCAGGACCTCAG
TCGCGGGGATGCAGCAACCCTCGAGTTCGAGCTTTTCATCTCCCAAGAGA
CAGGCCAAGCGATCTCGCGACATCGGAGACGGCACCCGACCGCCCAAACG
CGTGACCTTCTCTTCTTACAATCTCGTGCTTGGGAGAGCTCAGGACTACG
ATAGGACCAGCCTCGAGGAGCCCACCCCTCAGATGCATTCGATGGCGACG
CGTCAGCAGAACACTCCTGGCGTGTGGCCTCAGATCACGACACCTCATGC
GCACGAAGTAAGCACCACCGAGGGCGGCCACGCTAATTTCTGTGGCATGT
GGAGACGAAGCCACGGATTCAACTGGGCGGCGCTGCTTGAGCTTACCGGT
GTGCCCAAGGATGCTGTACCCGAGCAGGTGACCTTGGTTCGACCCTATGT
CGAGTAGTTTTTGAGAGCAGCCGAACCAACTTATGACTTTGCTCTAATAA
CAGCATAGTTAGCACTTCATTCCGGCGTAATGCTCGTTTTGGCCTCAGGC
TGAGTACGAGTTGAAAGTCTTCGAAATGCCCACCGTAAGACAGAAGACAG
CCTACAGTAGTAGTTAGTATTGGAATACATGCTTGAGTTTTTCTCGGCAA
CTGACCTCCCACAGATTATAATAATTATTTTTAGATTCTCACAGGACAGA
GTATATTATTTAGTACTTGAGTACGTCGTGTACCGGTACAGTGAAGTACA
GTATACGGTTCAAGTTAGACGAGCAGCGCATACTATAATAGTAGGTAATA
GTACTGTTGTACATATTTTCTCATACGATTACTTGTAGCGCTTCTCTCGC
CAGGCAGACAGGGGCGCGTTGGCTGCTGAGCCTCTCCGGCGCGGCAGACC
GGCAATTCGCAATGCCGAACAGACATCGGTGCTGCTTTCAGATTCCAGAC
TGCGCTTTTTGAAGCTGACCACAAACAGTACCCTGTTCATTCCTTGGGTA
CTGTCTGTCTGTCTGTCCGTCTGTCTGTCTGTTCCTCAACCATTGTTAAC
CACCGACCTTATATGCTACCAGTACCGTATATGTTATTCATCTATCCATC
TAGACTAGAGCTATAGTAGAGCTACGAGTACAACATTCAGTTGTACTAGT
CTACTGCTGCATTACAGTTTCTGAAGCACAACGGCGGTACAGTATTTAGC
AGTACACACTTACAACTGCAGTACTCTGGCACTGACTGTACTTCCGACAT
GTACACGCAAGTACACTGCTATCAAGTAATACTATCAAGTAATACCTGTA
CTTTGTGCGTGTTCTGTGTGTACCAGTACCAGTACAGTACAGTTCAGCAG
GAGTCCGGCCAGTGTTCGCAGTACGTTTCCGATTGAAAAAAAAAAGAAAA
AAAAAATCTGGGCACGTCATCTCTAGACCTCCGAGCATCTATAAATAGAG
CAGCACTATTATAGCACTATTATGGCACTAGCACTAGCACTATTAATTGC
ACCTTATCTATGAATGCACTATTATATGAACTATTAGTCTAATAGATCTA
TTATAATAAGAATGCACTATTAATATTAATATTAAAGGACGCTTCATCGG
AGAGAAGCTTTTTTCGTTTGTTTGTTTTTCTTACCTTCTTCCCGTTCCCA
CATGCTATCATATTATACTGTCATTAGACTACTATCCTATTGTACTATTA
TTAGACTGTTATACTAATAATAATACACCATTAACTTCTGTACAGTTACG
TGACGCTGCTATCTCGTATGCGCGGTGTCATGGTGATGGCCATGGTCATG
GGTGATGACACTGACACAACCTTAATGAATCGCCGTGCCATACTTGCGCT
TTCACCAATCGTCTGTAAATATCAATGCGACTGCTCAATCCGGCGCAGCG
TCATCTGACGGAAGCGGACCGTAACCACAAACAGTACTGTACTTTATCAT
CCCATGTTCGAGGTTAGGGTTAGGGTTACACCGACACCAATGTCAATGGC
TTTATGCCGTGTTGCCCAAATACCCTAATGCAGCGTGGCTGTAGACAGTA
CAATACCTAATAATACTTGATACTACTGTAGTGCCGCTGTTTGTAACAGA
CACTTACTCAAAAATACATTTTTTTTTCCTGACTCAATCTTCCCCCGCTT
CCGTCCCTGTCTGGTCATTGAATCATTGAATTGCATGTGTTAAATCACCC
TACGCGAGCAGCTGGAGAAGATGCAGGCCTCGTCGGTGGTGCACTTGATC
GAGCACGACGACGTCTCGTTCCGCCTCCTCGTACACAGCGACGCCGGCAG
CACCACCCAAGATCAGCACTTCTTCATCGGTGGACAACCGAGGCCAAACC
CCTGCTCCAAGACCCCAAGCTCCACGCTTGCAAATATGCGCTGGACCAGG
AATGGCCAGGCTCTCGTCCTTACCAGCGTTGACGCCGCCACGGGCGACGA
GATGACCGTTTCGAGGCACCTCGCGAATCGGGGGATGGTGATGGTCCAGC
ACTATCGCGCACGGTGCGCACGGACAGAGGATGCCGCGGAGGCCATCACA
ATATTTCGGAGAATTTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1217:168635..171252+

>mRNA_F-serratus_M_contig1217.1694.1 ID=mRNA_F-serratus_M_contig1217.1694.1|Name=mRNA_F-serratus_M_contig1217.1694.1|organism=Fucus serratus male|type=CDS|length=1674bp|location=Sequence derived from alignment at F-serratus_M_contig1217:168635..171252+ (Fucus serratus male)
GGTGATCAAGCCAGCATCGACGAGGGATACCTAGCGTTGCTTACTATCCT
GAAACACAGAAGAACCACGGCGGAATCGGACGATATGTGCAGGACCTCAG
TCGCGGGGATGCAGCAACCCTCGAGTTCGAGCTTTTCATCTCCCAAGAGA
CAGGCCAAGCGATCTCGCGACATCGGAGACGGCACCCGACCGCCCAAACG
CGTGACCTTCTCTTCTTACAATCTCGTGCTTGGGAGAGCTCAGGACTACG
ATAGGACCAGCCTCGAGGAGCCCACCCCTCAGATGCATTCGATGGCGACG
CGTCAGCAGAACACTCCTGGCGTGTGGCCTCAGATCACGACACCTCATGC
GCACGAAGTAAGCACCACCGAGGGCGGCCACGCTAATTTCTGTGGCATGT
GGAGACGAAGCCACGGATTCAACTGGGCGGCGCTGCTTGAGCTTACCGGT
GTGCCCAAGGATGCTGTACCCGAGCAGGGTGATCAAGCCAGCATCGACGA
GGGATACCTAGCGTTGCTTACTATCCTGAAACACAGAAGAACCACGGCGG
AATCGGACGATATGTGCAGGACCTCAGTCGCGGGGATGCAGCAACCCTCG
AGTTCGAGCTTTTCATCTCCCAAGAGACAGGCCAAGCGATCTCGCGACAT
CGGAGACGGCACCCGACCGCCCAAACGCGTGACCTTCTCTTCTTACAATC
TCGTGCTTGGGAGAGCTCAGGACTACGATAGGACCAGCCTCGAGGAGCCC
ACCCCTCAGATGCATTCGATGGCGACGCGTCAGCAGAACACTCCTGGCGT
GTGGCCTCAGATCACGACACCTCATGCGCACGAAGTAAGCACCACCGAGG
GCGGCCACGCTAATTTCTGTGGCATGTGGAGACGAAGCCACGGATTCAAC
TGGGCGGCGCTGCTTGAGCTTACCGGTGTGCCCAAGGATGCTGTACCCGA
GCAGCAGCTGGAGAAGATGCAGGCCTCGTCGGTGGTGCACTTGATCGAGC
ACGACGACGTCTCGTTCCGCCTCCTCGTACACAGCGACGCCGGCAGCACC
ACCCAAGATCAGCACTTCTTCATCGGTGGACAACCGAGGCCAAACCCCTG
CTCCAAGACCCCAAGCTCCACGCTTGCAAATATGCGCTGGACCAGGAATG
GCCAGGCTCTCGTCCTTACCAGCGTTGACGCCGCCACGGGCGACGAGATG
ACCGTTTCGAGGCACCTCGCGAATCGGGGGATGGTGATGGTCCAGCACTA
TCGCGCACGGTGCGCACGGACAGAGGATGCCGCGGAGGCCATCACAATAT
TTCGGAGAATTTGACAGCTGGAGAAGATGCAGGCCTCGTCGGTGGTGCAC
TTGATCGAGCACGACGACGTCTCGTTCCGCCTCCTCGTACACAGCGACGC
CGGCAGCACCACCCAAGATCAGCACTTCTTCATCGGTGGACAACCGAGGC
CAAACCCCTGCTCCAAGACCCCAAGCTCCACGCTTGCAAATATGCGCTGG
ACCAGGAATGGCCAGGCTCTCGTCCTTACCAGCGTTGACGCCGCCACGGG
CGACGAGATGACCGTTTCGAGGCACCTCGCGAATCGGGGGATGGTGATGG
TCCAGCACTATCGCGCACGGTGCGCACGGACAGAGGATGCCGCGGAGGCC
ATCACAATATTTCGGAGAATTTGA
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