mRNA_F-serratus_M_contig1217.1692.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1217.1692.1
Unique NamemRNA_F-serratus_M_contig1217.1692.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1217.1692.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1217contigF-serratus_M_contig1217:51263..58353 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-24_000350.1
Exons2
Model size1193
Cds size516
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1217.1692.1prot_F-serratus_M_contig1217.1692.1Fucus serratus malepolypeptideF-serratus_M_contig1217 51940..58353 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929136.1746986-UTR-F-serratus_M_contig1217:51262..519391622929136.1746986-UTR-F-serratus_M_contig1217:51262..51939Fucus serratus maleUTRF-serratus_M_contig1217 51263..51939 -
1690962719.4497564-UTR-F-serratus_M_contig1217:51262..519391690962719.4497564-UTR-F-serratus_M_contig1217:51262..51939Fucus serratus maleUTRF-serratus_M_contig1217 51263..51939 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929136.1906385-CDS-F-serratus_M_contig1217:51939..522261622929136.1906385-CDS-F-serratus_M_contig1217:51939..52226Fucus serratus maleCDSF-serratus_M_contig1217 51940..52226 -
1690962719.4597602-CDS-F-serratus_M_contig1217:51939..522261690962719.4597602-CDS-F-serratus_M_contig1217:51939..52226Fucus serratus maleCDSF-serratus_M_contig1217 51940..52226 -
1622929136.2000873-CDS-F-serratus_M_contig1217:58124..583531622929136.2000873-CDS-F-serratus_M_contig1217:58124..58353Fucus serratus maleCDSF-serratus_M_contig1217 58125..58353 -
1690962719.4713178-CDS-F-serratus_M_contig1217:58124..583531690962719.4713178-CDS-F-serratus_M_contig1217:58124..58353Fucus serratus maleCDSF-serratus_M_contig1217 58125..58353 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1217.1692.1

>prot_F-serratus_M_contig1217.1692.1 ID=prot_F-serratus_M_contig1217.1692.1|Name=mRNA_F-serratus_M_contig1217.1692.1|organism=Fucus serratus male|type=polypeptide|length=172bp
TRRWSLAAIRRLSVSKRGSKFWLEAEEGVVKHGVIYNTTTTSDRPRSVVR
RALHKIGKKKRKHNAVPIIDVDPPNVEELDVDPRLREKWEKRRELRRQAA
AQGDEGEKQLISTNKSKGMAALVINGLSTGSAQWLKDKTRRWVETNRIAL
AAVVAALGFALVCAVVVRRCS*
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mRNA from alignment at F-serratus_M_contig1217:51263..58353-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1217.1692.1 ID=mRNA_F-serratus_M_contig1217.1692.1|Name=mRNA_F-serratus_M_contig1217.1692.1|organism=Fucus serratus male|type=mRNA|length=7091bp|location=Sequence derived from alignment at F-serratus_M_contig1217:51263..58353- (Fucus serratus male)
ACACGAAGATGGAGCTTGGCCGCGATAAGGCGACTCAGCGTCAGCAAGCG
AGGATCGAAGTTTTGGCTTGAGGCGGAGGAAGGTGTGGTAAAGCATGGTG
TCATCTACAACACGACAACAACTTCGGATCGGCCGAGGAGCGTTGTTCGT
CGAGCTCTACACAAGATAGGAAAGAAGAAACGGAAGCATAACGCCGTCCC
TATCATCGACGTCGATCCACCTAACGTAGGTTGGCGTGACTGATTGTATT
GGAGATATTTTGGCTTCCAACATTGCTCTAACACTTGTAATGCAATACTG
TACTCGAAAGGCGCGGACGCATAAGTACGCTGTACAATTCAAACCCAACG
GTGATCTGTTCTAGGCTTTTGCGCAGCAGTGCGCCCCCTATGTCATTGTA
CTACAGCAGTACATTCTTGTGTATCAGGGTATGTAATGACATCAGGCTTC
CTCTATGGCGGTGGTGGTCCATGCGCCCGCAACGAATCTCTCAGGTTGGT
CACGAACGTGGAACCCTGATCGTCTTGCTGTTCCGGGGAAAGGTACTTCA
ATCAGTACCCCTGGGAGCTGCGAAACGCAAGAAACACCAGCAGATTTTTC
TTCGAACACCAGCAAAATATTTCCACGTGTCCTGTAGTTTAAAGAAAAAT
CTGCACGCATCTGAGCTGAACCTTCTTACAGAAGACCAATTAGACTAGCG
CTAACCGTCCGCCCAGGGAAGGAGGGGGTTTTAAGGTTTAAGACGTTTAG
GTGGGAACATTGGCTGCAAGGGATACACATTCTACGTTGAACAAGTGCTC
GTCTCACACTTGAAACACAGTACTGAAAAAGTTCTGAAAATTGAGATTGA
AATTTTGGTGTCTCCGCACCTACGTTGTGGTACTGTGTGTGAGTGTTTTT
TTCCATTTATTCTGGACATCAAGTTCGTTGGACGTACCAGCCGGGGTCAC
ACAGGAAGGTCACACAGGATATCTCATCCACCTTCCTTCTGCGGTACTGC
TGTACTTGGTGCTGGTACTTTTCTAACTGATATTTCTACAGACTTTCTGA
GCATCCCTCCGCCAGGGGGAAAAAAAGTCAGAACATTTAGGTGGGATTAC
ATTCCTCAAAGATATTACGGTACCACTTCATGGCAATTAATCGGGTTCCC
CGATGGTAGTAACATTGGATCAACAGCAGTATTATGTCGGGGAGAAACCC
ACCGCCATACTTGTACTATCTGTACTTTTACATCAATCGCTATGCGGGGA
CAACAAACAAAAAACAAAAACAAAAGACAGCGCGATGAGCTTGGATTACA
GTACAGCTCAATATGTTATTGGGTCTAGAAGGATCAGATGGGTGTCGATG
AAGGAAATATTCATGCATTGTAGAAATGATAACGGAAGAGTGTCCAATAA
CTATTCTTACGGTACATATTTACAAGTGGCAATTAACCAGAAATATAAGA
TTGACGACGAGTGGTTCAACAATAAAGAGGTTTTGTATTTGCAGCCTTTG
ATCCCACCTAAACGTTTTGACATTTTTTCTTCTGACTGGAGGATGCTCAG
AAGGTATAGGCGCGTTCTGGTTTTTCTTTAAGTAATAGACGCAATGTAAC
AGATTGAGCTGTAATCCAAGCTTGTCGTGTCTTTTGTCTTTGTTTTGTGT
GGTGTCCCTGGATGGCGATCAATTTAAGGGCAGACGCCAGAGAACGGTAC
ACCGCCATGGTTCCGCGCCACAAAGGGGTGCACATGACCAAGACATGAGT
ACACCTTGACATTTGAGCCTCTTTCGCGACGCTGATTGGTCAACTAAGCC
TTGTACCACGTTTTGACACCATCCTCTGGCAGTACACTCTTTCGAGGCTT
CTCAGGTCGACTCGTACCGCTTTTTGTCATGGGGGTGTACCGAATTCTGG
CGGAGTCAGAGCACCCCCAGCGGAACATTTCCAAGGCCGTTCTCTCCAAA
AACAAGTTGGAAGAAATGAATATTCACCCCACAACCAACGCAACCCCGTC
ATGTCTCCGTCATGTCGCAGACATAAAAAAACTCAGATCTTCTCTTTTTG
CACAGCAGATAGAAAGATTTCCTTGCCCCTATCGGTCAGATGACACGGCC
AGATGAGTAAGCACCAGGTTAATAGCATGATAGATTCAGTCTGAGTGTGG
AGAATGAGCGGGCTGACACGGGACAGGTCGGCCGAACCTGTCTCGCGAGA
CCAAATTCTCAGGCGCGAACAAGGACAGGGAAAAATTTATTAACAATCAT
GTTGAGCTGACCACGAGCAGAAGTGAAAAGGGAACCTTACCCGGTTGATA
CCACTGATACATACTCTGCTATAAGTAATGAACATACAGTACGTGAGGTT
AGTGTGGCATTTCAGTAGTATGATATTATCGTATAGACTCTATAGTAGGA
GAGGGATGAGAGGTATGAGAGGAATGCCCGTGCCATACGAGTATAGCAGC
AACTAATTCCACTGTATATATGCATACTATTGTATAATGTATCCTGTTAA
TATTAATACACAGTAGTATTCCATAATAAGCCATAATTCCGTACTGGTAA
AGTGAGTGAATAGTTGAATGCGCAGATGACCGCAGAAACAGTATAGAGGT
ATAGAGCTGCTACGTAGTATGCTATAGTATCCTATGGCCATAAAACACGA
GGAATAAGGGAGGCTCGAGCCCCCGCTCGTACAGCATATCAAGCATATGA
AGATATCAAGATATCAAGCTAAGAGGCTCAATGTTATTATTGGTTGGCAA
GAGGCTCATAGCAGTGCGGTTGGCGTGCTTTTCGGCAAGTTACGAGAAAA
TAGTCCAGACCATTACAAATATCAGCGCTGTTCGGGTAACAAACGGGCAC
AAGCGCGGCCGACCGTCAGCGCTGCGAGACTTTGCGGTCACGAAGCAACT
CGACTGCAGATTGCCACAAGAGAGATATCACTATTATAGTCTCGGACCTT
TATCTGTAGTGTTTACCATGTGCTACGCAAATGCACACGCGGCGATAGGG
CAGCCTACCTGCACCGAGCCCCGGGGGGGGGCATAGGTCACAGGGGGTAT
TTGAAGGGTTATGACTGTGGTCCAATTAGTAGAGTGAGAAACTATGAGGA
ACAGCAGTCCTAGGCTCCGAGACGATTTCCTTTGTATCGTACTACATGAC
CTACAAGCCCCCCTAGGCCGATAGCCCTGAGTCATAGGATCACGTATGTA
CCTTGCAGAGCTGCCTCCGTTGTCCGAGGTGCCCAAAGAGGGCTCCTCAC
TTTTCTCTCTTTTTTCTTTAATAAAGGTCCATCTGGCCTCCCTCCACTGG
CTAGTAGCTACAGTCGTGTGGCTGTTTCATCAGTATTTTGTGCCCAAAAT
ATGTTTTTTCGGCCCAAACGCGCGGGGCCCCGATAAATGTCATGGAAGAG
GTTTTCTCTTTGCAGCCTACAATCCCACCTAAACGTATACTCAAAATGTC
TAGACGCGTCCAGATTCTTCTTTAAAATTCTATATTTCAGTTTTTTTACC
GTTTTATCTATTCGGTCCATGTTTATAATTTTACACTATATCTTACTGTA
TTGCAACATAGAGGGAGGATCACCAACGTAGATGTCTTTAAAGAAAACAG
AAGTACAAGACACCGGCATTCACCTGAAAGTAGGACTGTATCGAGAGTGC
TGGAGTTAATAATGCCGAACTCTGACGTCAAGTCTTGTTGACGCGTGCGT
ACAAGTGCTGTACTTCTTATAGTCTATATGATGACCATACATACAAGTAT
AGTATTATGCAGTGCGAGTGCGTTGTGTTTTATACTCAGAAGTTATTAAT
AGTGCACGAAGTACTTACCTGGTACATAATATTGCAAGTGTTGGATTTTG
TAGTATTTATACTGTAACAGAGTAAACCTTCGGCGTCCTAGCTATAGAGT
TCTCGCTTGAATCAATGTCCCTTCGTGACATCGATTGATGCGAGAACTCG
TCGATGCTGACGAGTGCAAGCCTGCCAACAGCATCGACTGGCGGTGATGC
CCCCCAACAAAGCGAAATAGTTTCCCGCGGCAACCGTGCCTGCGGCAGCA
AATTTGGGACACCGCCGCCGCGGAAAACGTGGGACCCGAAGCGAGGAGAG
GAGGAATGCTCGGAGGGTCCACGCGAGTAAGCAGAAGTGTCGACGATGGA
GAAGTCGGGGCGTGGTGGGAGTGCCGTACCCAACACGTCGGAAGAACGTA
GGCAAGAACCTGGGTAGGAAACACCTGGAGGAACTGAGCGAAAGGCGAAG
GGCATTTGCTCGAATAAAGCGACGGGGGAAGCGGGCGGAGAGAAAGTCCG
CCCGCAAGAAATAAAAGGCCGCCAGGGCGAGGTCTCGGCTGGAGGAGCTC
ACGTTCGGTACGTTCAACGTTCGCACAGCAGCGGTCAACGGATTCAACGG
TATCGGCCACATAGACACCCTGCTGAGAACCTATGCTGCAAAGGGTTGTG
ACGTCATCGGATTGCGGGAGACCAAAAGGGACGGAACTTCGGAAGTTTTT
GCATCTGGATACTGCGTCTTTTTTAGTGGTTATTGCAGTATGGTTAAGGG
TAGGAAAGAGCAGCATGGGGTTGGACCTGCGATAAAGGAAGAGATGGTGG
AGCCTATTATATCAGAGTCAACCGAGACCGTCGGAAGCCGAGCCTGAATT
TATGTAATTTGTAGAACAGTTCAGAGTATTATATATAACAGTGATAATGA
CAGCATGGGCTGTTTCGGAAGCGAGCGCAGATTTTTTTCCGTGAAACACG
TTGGAAGCGACCTTTGAAATAATTCTCAGGAATCGTTCATTGGAAAACAA
TTCGGAAATAAAGGGAGAAGGAGAAGGTTCTTTAAACCAGGCCTTCGAGG
ACAAAAAAACACGCTGCGGATGGAGAATCGCGAGCTTCCCTCCGAGGACA
TGAAACTTATTGACCCAAGGCGACAGCCATGAGGGAACTCAGCAGAAACC
GTGTGGGGGTTTGTGTCTACAGCTGCTCTTGTAGGGAAGTAAAAGTCTAC
CCGCTTGACATGATGTCACGTTCATCAAGTATAGCTATAGTCTCCCGCGG
TTTGTTGTCCGCAAATGCTGTACAAGTTCAAGTGCAGCGCTCACTTCAAG
CAAGGGTTGTCCTGGCGGTCACATAGCGTTACATTGCTGAGCTCTTTGGC
AGGAGCTATAGGAGTACCGCGACTGCACTGTAACCTGTTGAATGTATTCG
AGCATTTTTTGTCAATCTTCTGCCGACGAGGACTACCAATGTTCCATAAA
CGTGCCTGGCTACCAACCCCACCTGTTAATACCACAGTTCGGCTATCTTG
TTGAAGTAATTGAAGATCTTCTTGTGCAGTACTTGTGCGTTTATTCCAGT
TACGTACCGCGCTAATACTGTTACTATAGTATGAGCTGTAATATCATCGA
ACGTTGAACTTCGCCTGCAGACTAGTCACGTTTCTTGGGAACATTTTAAA
TTCTTACCCCGCAGAGTTTGAAAATCACAAATCTGCGTTTCGAGCTCTCC
AATACCAACCACAACAGTACCACAGTACAGTTCTATTGTACACCACACTA
CAGTTGTAGGCGATTTCTAGCTATTATAGACGACCGTATTCGTGCGAGGA
CTAATAATATAATATTATGACTACAGTGACTGTTGTGAAGTCAGCTCGGG
CGGTGAATGTGTGACGGTTCGGATGAGACTCTCTCTCTCACCCCCCTTTG
TTCCTCTAATACTCGCAGCATATATATATATATATATATAATATTGATAG
TACATAAATAATGCCCTGGTACTTGGCATAAAAAGTCCACGCACCGACTA
AAACCTCGTGCAAGTCTCCCATGGCATGAGAGCATGACATCTCAGAGTGT
TGAGGCAGCAGACTTTCTTGTTTTTGTTTGTCATGCTGTGCTGTCCTGAC
GATTCCCCCCAGCATGAAAAGTTCTCAAGCACGCTGAATGTGCAGGGGAG
CAGAGCACTTCGTTCTGAAGCCATGATAAAGAACCTTGCATCATTACAGT
CGAACGAGCAGGTGCTTCGCGTTCACAGCGCTTGGGTTGCCCGCCGGCCC
GTCGACCTCGTCCTTACGATCCTGGCGTGTGGGTCTGACTTCCCTTGCTT
GCGTCCTTCCGCCCGGCACCCAGGTAGAGGAGCTGGACGTCGACCCACGT
CTACGCGAAAAATGGGAGAAGCGGCGAGAGCTCAGAAGGCAAGCCGCGGC
GCAGGGAGATGAGGGCGAAAAGCAGCTCATATCTACTAATAAGTCTAAGG
GCATGGCGGCGTTGGTTATAAATGGTCTCTCGACGGGATCGGCGCAATGG
TTGAAGGATAAAACGCGGCGTTGGGTGGAAACGAATCGGATCGCGCTGGC
CGCGGTCGTGGCGGCCTTAGGCTTCGCGCTGGTGTGCGCCGTTGTTGTGA
GGCGCTGCTCGTGAAAGGGCCCGCGCATCGCTGTTGTCCAGTCAGTACAC
GTTTCTCGTCGTTTTTCCGACGAAGGGGACGAGATTGGGCAGCACGGTTG
AGCTAGGAGTATTTACTAGAGCTTTTTGTCCATGTTTTTTCAATCAGAGT
ATTATTAGTTGTACTAATGTTTATGTTAGTGGTGGAGTAGCAGAACAAGT
ATTGTGACGACAAACGATAGATTCACCGGAACAGTCAATGTACGACGTTG
ATCTTGTGGTTAGAGCTGTTGGTTCCACGTGTTCACTTCTACGATCCGTC
GTCGTGTTCCATGCGGGTGACCCTCCCTTAACGACAGATCGTTGTTTCGC
TTATACCGTGACCCGATGTCTTGCACGAGTAGTGGTTTTCGAGTCGTGTG
GCCGTCTCTCAACGACAGATCGTTGGTTCGCTCTATACCGCGACCCGTTG
TCTTGCTCTAGTAATGATTGCTTTATTGTTTGGGCGTTATTGATGTTGGT
GTAGTCATTGTTGTAGTCATTTTTTCCACGTCGTGCTGATAAGTCTGATC
CCCAAGCCCCCGTGCTACGAACACATTAATATAAACGTAATGACTGTAAA
GACACAAACAACCTATGAGTATGTGCTGACAACCAAGGGCACGTAGCTCC
TACTAATCCTGTAATATTAATATAATAGTGGTGCTGACCTA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1217:51263..58353-

>mRNA_F-serratus_M_contig1217.1692.1 ID=mRNA_F-serratus_M_contig1217.1692.1|Name=mRNA_F-serratus_M_contig1217.1692.1|organism=Fucus serratus male|type=CDS|length=1032bp|location=Sequence derived from alignment at F-serratus_M_contig1217:51263..58353- (Fucus serratus male)
ACACGAAGATGGAGCTTGGCCGCGATAAGGCGACTCAGCGTCAGCAAGCG
AGGATCGAAGTTTTGGCTTGAGGCGGAGGAAGGTGTGGTAAAGCATGGTG
TCATCTACAACACGACAACAACTTCGGATCGGCCGAGGAGCGTTGTTCGT
CGAGCTCTACACAAGATAGGAAAGAAGAAACGGAAGCATAACGCCGTCCC
TATCATCGACGTCGATCCACCTAACGTAGACACGAAGATGGAGCTTGGCC
GCGATAAGGCGACTCAGCGTCAGCAAGCGAGGATCGAAGTTTTGGCTTGA
GGCGGAGGAAGGTGTGGTAAAGCATGGTGTCATCTACAACACGACAACAA
CTTCGGATCGGCCGAGGAGCGTTGTTCGTCGAGCTCTACACAAGATAGGA
AAGAAGAAACGGAAGCATAACGCCGTCCCTATCATCGACGTCGATCCACC
TAACGTAGAGGAGCTGGACGTCGACCCACGTCTACGCGAAAAATGGGAGA
AGCGGCGAGAGCTCAGAAGGCAAGCCGCGGCGCAGGGAGATGAGGGCGAA
AAGCAGCTCATATCTACTAATAAGTCTAAGGGCATGGCGGCGTTGGTTAT
AAATGGTCTCTCGACGGGATCGGCGCAATGGTTGAAGGATAAAACGCGGC
GTTGGGTGGAAACGAATCGGATCGCGCTGGCCGCGGTCGTGGCGGCCTTA
GGCTTCGCGCTGGTGTGCGCCGTTGTTGTGAGGCGCTGCTCGTGAAGGAG
CTGGACGTCGACCCACGTCTACGCGAAAAATGGGAGAAGCGGCGAGAGCT
CAGAAGGCAAGCCGCGGCGCAGGGAGATGAGGGCGAAAAGCAGCTCATAT
CTACTAATAAGTCTAAGGGCATGGCGGCGTTGGTTATAAATGGTCTCTCG
ACGGGATCGGCGCAATGGTTGAAGGATAAAACGCGGCGTTGGGTGGAAAC
GAATCGGATCGCGCTGGCCGCGGTCGTGGCGGCCTTAGGCTTCGCGCTGG
TGTGCGCCGTTGTTGTGAGGCGCTGCTCGTGA
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