mRNA_F-serratus_M_contig1217.1690.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1217.1690.1
Unique NamemRNA_F-serratus_M_contig1217.1690.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig1217.1690.1 vs. uniprot
Match: D7G092_ECTSI (Smr domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G092_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 2.760e-14
Identity = 37/65 (56.92%), Postives = 46/65 (70.77%), Query Frame = 1 
Query:    1 LAALSGRNVGSVRVLAGTGHHSRGPTSKARLIPAVEYFCQSRGLSHRLVADHGTAHVGVVELNLA 195
            + AL+ R + SVRVL GTGHHS+GPT+KARL+PAVE FC  RG   R V D  T HVG +++  A
Sbjct:   52 MGALAERGLCSVRVLTGTGHHSKGPTNKARLLPAVENFCLIRGYLFRKVPDQSTGHVGAIDVQFA 116
[Close]
BLAST of mRNA_F-serratus_M_contig1217.1690.1 vs. uniprot
Match: A0A6H5JKG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKG2_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 1.240e-12
Identity = 37/65 (56.92%), Postives = 46/65 (70.77%), Query Frame = 1 
Query:    1 LAALSGRNVGSVRVLAGTGHHSRGPTSKARLIPAVEYFCQSRGLSHRLVADHGTAHVGVVELNLA 195
            + AL+ R + SVRVL GTGHHS+GPT+KARL+PAVE FC  RG   R V D  T HVG +++  A
Sbjct:  579 MGALAARGLCSVRVLTGTGHHSKGPTNKARLLPAVENFCLIRGYLFRKVPDQSTGHVGAIDVQFA 643
[Close]
BLAST of mRNA_F-serratus_M_contig1217.1690.1 vs. uniprot
Match: F0WYU9_9STRA (Uncharacterized protein AlNc14C400G11359 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WYU9_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.940e-6
Identity = 29/64 (45.31%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:    1 LAALSGRNVGSVRVLAGTGHHSRGPTSKARLIPAVEYFCQSRGLSHRLVADHGTAHVGVVELNL 192
            L  L+   + +VR++ GTGHHSRGP + ARL+PAVE+F ++ G     VAD    +VG++++NL
Sbjct:  478 LPQLAEDGLDTVRIVTGTGHHSRGPQNTARLLPAVEHFLRTEGYESESVADR-KGYVGMLQVNL 540
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1217.1690.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G092_ECTSI2.760e-1456.92Smr domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JKG2_9PHAE1.240e-1256.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
F0WYU9_9STRA1.940e-645.31Uncharacterized protein AlNc14C400G11359 n=1 Tax=A... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1217contigF-serratus_M_contig1217:2400..3911 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.1
Seed ortholog evalue4.7e-07
Seed eggNOG ortholog653948.CCA26658
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.2',3'-cyclic-nucleotide 3'-phosphodiesterase activity
EggNOG OGsKOG2401@1,KOG2401@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size927
Cds size204
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1217.1690.1prot_F-serratus_M_contig1217.1690.1Fucus serratus malepolypeptideF-serratus_M_contig1217 2400..3188 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929135.9645908-CDS-F-serratus_M_contig1217:2399..24831622929135.9645908-CDS-F-serratus_M_contig1217:2399..2483Fucus serratus maleCDSF-serratus_M_contig1217 2400..2483 +
1690962719.287619-CDS-F-serratus_M_contig1217:2399..24831690962719.287619-CDS-F-serratus_M_contig1217:2399..2483Fucus serratus maleCDSF-serratus_M_contig1217 2400..2483 +
1622929135.9772868-CDS-F-serratus_M_contig1217:3068..31881622929135.9772868-CDS-F-serratus_M_contig1217:3068..3188Fucus serratus maleCDSF-serratus_M_contig1217 3069..3188 +
1690962719.2976649-CDS-F-serratus_M_contig1217:3068..31881690962719.2976649-CDS-F-serratus_M_contig1217:3068..3188Fucus serratus maleCDSF-serratus_M_contig1217 3069..3188 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929135.9891388-UTR-F-serratus_M_contig1217:3188..39111622929135.9891388-UTR-F-serratus_M_contig1217:3188..3911Fucus serratus maleUTRF-serratus_M_contig1217 3189..3911 +
1690962719.3063343-UTR-F-serratus_M_contig1217:3188..39111690962719.3063343-UTR-F-serratus_M_contig1217:3188..3911Fucus serratus maleUTRF-serratus_M_contig1217 3189..3911 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1217.1690.1

>prot_F-serratus_M_contig1217.1690.1 ID=prot_F-serratus_M_contig1217.1690.1|Name=mRNA_F-serratus_M_contig1217.1690.1|organism=Fucus serratus male|type=polypeptide|length=68bp
LAALSGRNVGSVRVLAGTGHHSRGPTSKARLIPAVEYFCQSRGLSHRLVA
DHGTAHVGVVELNLAGY*
back to top

mRNA from alignment at F-serratus_M_contig1217:2400..3911+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1217.1690.1 ID=mRNA_F-serratus_M_contig1217.1690.1|Name=mRNA_F-serratus_M_contig1217.1690.1|organism=Fucus serratus male|type=mRNA|length=1512bp|location=Sequence derived from alignment at F-serratus_M_contig1217:2400..3911+ (Fucus serratus male)
CTAGCGGCGCTGTCGGGGCGGAACGTCGGCAGCGTCAGAGTGCTCGCCGG
TACCGGTCACCACAGCAGGGGACCAACTAGCAAGGTACGGGCCCTCCTCA
CCCCGCGCCAAAAACGCATCCCAACAGCTGCTGAACTCTTATCTTGGTCT
GTTTGTTTGTTCACACGGTCTCGAAGATGCTGACACGAGGACCTTGTTTT
CCAGTCTATAGTTTATACAGTATACTTCCGCATCTCACGCACGCTACTGT
GTTCAATTGGAAATCTATAATAGTTGTGACGTCGAAGGGAACTGTTTTTT
TTTACACTTTCATATAGTATGCCGTCTGGAGGCTCTTGCATCCCATCATT
ATCTGCGTTGCTGGACATGCCTTGTAATCTATACATTTAAGTAGCCACCT
ATATACCGTTACTGTGTACTTTTCTGTACTATTAATAATGATGTTGGTAG
TAATTTCCAATACGCCAGGTCCTGTCATCCCTACGAATCTAGTGTAAACT
TGCACGGTACATATACTTATGGTGTAACGAGCTTCATCCATTTTTTTTCG
CCGCTGCGGCAAACCAGCATGGCGAAAAAAACAGTACAAAATGACACAAG
GTCTATTAATAGTTGACGTACTTTGTCTAACACGCTCCTTGATTATTTTC
GCTGGCGGCGCAACTGCAGGCACGCCTCATCCCGGCGGTTGAGTACTTTT
GCCAGTCGCGAGGGCTCTCACATCGGCTTGTCGCGGATCATGGCACGGCG
CACGTTGGCGTCGTCGAGCTCAACCTCGCTGGGTATTGAAACAAGGAAAC
TCGTCGCAGTGTAGCCGCGGGACCCGAAGACGCCGGAGGTTTTTGAGGGT
GCGAGCGTTAAGCCAGGGCATCAGCAGCTACACTATCATCGATGACGAGA
CGGCCGTGCTACGCTATTGCTATTTCGTCCAAGGGAGCTTTTGGATTGGA
AAAAAAAGACCCGATGAGTTGTAGAAGTCGCTGTCTGCGCCAGACTTGGG
GGTTATGGTTATATAGACCGTTCGTTCCTTGGTCGTGGCGCGAGAAATCT
TATGAACGTATGTATGTAGAAATTGTAACGCATCTAAACCTTTTGAGCAT
ATCCCCCGGACGGGGGAAAATTGTAACGACGTGTAGGTGGGAACATAGGC
TGCAAAGACAAACCTCTCTATGGCATTTAAGCGGGTTCGGGCTACCCGAT
GGTAGTAGCATAGAGTCAAAAGCATAGTGTCGGGGAGAAAATCGCGATGC
AGGGACACCAAAACGGAGGCAAACGGACACGACGGAGCCTGGACACAGTT
CAATTTTGTTACTTTGGGACTAAGATCGGATGGGTGTCAGCATTACGAGA
CAAGGTTTTGCTTTGTGATAGTGATCAGACTATAATTTTTATAGATGCTA
AGGAAAATAAGTAGTATTATAAGTGTACAGTAGTGCAATATTTGGTGCAA
ATAGTTCCACTCTGTCCGGATATGATAAGCCCCGTTTCGACATTTTGCGG
CACAACTCCTGC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1217:2400..3911+

>mRNA_F-serratus_M_contig1217.1690.1 ID=mRNA_F-serratus_M_contig1217.1690.1|Name=mRNA_F-serratus_M_contig1217.1690.1|organism=Fucus serratus male|type=CDS|length=408bp|location=Sequence derived from alignment at F-serratus_M_contig1217:2400..3911+ (Fucus serratus male)
CTAGCGGCGCTGTCGGGGCGGAACGTCGGCAGCGTCAGAGTGCTCGCCGG
TACCGGTCACCACAGCAGGGGACCAACTAGCAAGCTAGCGGCGCTGTCGG
GGCGGAACGTCGGCAGCGTCAGAGTGCTCGCCGGTACCGGTCACCACAGC
AGGGGACCAACTAGCAAGGCACGCCTCATCCCGGCGGTTGAGTACTTTTG
CCAGTCGCGAGGGCTCTCACATCGGCTTGTCGCGGATCATGGCACGGCGC
ACGTTGGCGTCGTCGAGCTCAACCTCGCTGGGTATTGAGCACGCCTCATC
CCGGCGGTTGAGTACTTTTGCCAGTCGCGAGGGCTCTCACATCGGCTTGT
CGCGGATCATGGCACGGCGCACGTTGGCGTCGTCGAGCTCAACCTCGCTG
GGTATTGA
back to top