mRNA_F-serratus_M_contig1214.1685.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1214.1685.1
Unique NamemRNA_F-serratus_M_contig1214.1685.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1214.1685.1 vs. uniprot
Match: D7G6T7_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6T7_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 1.240e-21
Identity = 48/98 (48.98%), Postives = 64/98 (65.31%), Query Frame = 1 
Query:    7 SLVILILGIAVHLASAHPHCHYDEREVDLEREMTFCSMEYAAEGVCCTELEEVALEDTYTAAIGDLTTECASYYKQVLCGVCGSYSGHLYERLTDDLG 300
            S+ I++LG  + L ++HP C+ D+R  D +  + FC    A  G CCT+ EE AL      A+G+LT +C   YKQV+CGVCGSYSGHLYERL  +LG
Sbjct:    9 SIAIMLLGALITLCASHPLCYVDDRPTDPDEILEFCPE--AQSGACCTDAEE-ALVQLRHEAVGNLTGDCDDLYKQVVCGVCGSYSGHLYERLGAELG 103
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BLAST of mRNA_F-serratus_M_contig1214.1685.1 vs. uniprot
Match: D7G4P3_ECTSI (Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4P3_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 1.930e-17
Identity = 41/93 (44.09%), Postives = 55/93 (59.14%), Query Frame = 1 
Query:   22 ILGIAVHLASAHPHCHYDEREVDLEREMTFCSMEYAAEGVCCTELEEVALEDTYTAAIGD---LTTECASYYKQVLCGVCGSYSGHLYERLTD 291
            +  +A    +AHP C  D++  D ++ +T+C    A  G CCT  EE  +E  + AA G     +T CA+ YKQV+CGVC SYS HLYE LTD
Sbjct:    7 LAALAATKVAAHPLCFIDDKPTDYDQVLTYCDNSIAMSGACCTNEEEDIVEANFNAAFGVGVVPSTACAALYKQVVCGVCHSYSAHLYEYLTD 99
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1214.1685.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G6T7_ECTSI1.240e-2148.98WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G4P3_ECTSI1.930e-1744.09Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1214contigF-serratus_M_contig1214:97327..100360 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score98.2
Seed ortholog evalue2.3e-18
Seed eggNOG ortholog2880.D7G6T7
KEGG rclassRC00194
KEGG koko:K04618,ko:K08254,ko:K11244,ko:K20929
KEGG ReactionR01098
KEGG Pathwayko00052,ko04011,ko04139,map00052,map04011,map04139
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
EC1.1.3.9,1.2.3.15,3.2.1.59
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons2
Model size300
Cds size300
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929135.5830193-CDS-F-serratus_M_contig1214:97326..975601622929135.5830193-CDS-F-serratus_M_contig1214:97326..97560Fucus serratus maleCDSF-serratus_M_contig1214 97327..97560 +
1690962719.0396986-CDS-F-serratus_M_contig1214:97326..975601690962719.0396986-CDS-F-serratus_M_contig1214:97326..97560Fucus serratus maleCDSF-serratus_M_contig1214 97327..97560 +
1622929135.6066494-CDS-F-serratus_M_contig1214:100294..1003601622929135.6066494-CDS-F-serratus_M_contig1214:100294..100360Fucus serratus maleCDSF-serratus_M_contig1214 100295..100360 +
1690962719.0556335-CDS-F-serratus_M_contig1214:100294..1003601690962719.0556335-CDS-F-serratus_M_contig1214:100294..100360Fucus serratus maleCDSF-serratus_M_contig1214 100295..100360 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1214.1685.1prot_F-serratus_M_contig1214.1685.1Fucus serratus malepolypeptideF-serratus_M_contig1214 97327..100360 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1214.1685.1

>prot_F-serratus_M_contig1214.1685.1 ID=prot_F-serratus_M_contig1214.1685.1|Name=mRNA_F-serratus_M_contig1214.1685.1|organism=Fucus serratus male|type=polypeptide|length=100bp
MKSLVILILGIAVHLASAHPHCHYDEREVDLEREMTFCSMEYAAEGVCCT
ELEEVALEDTYTAAIGDLTTECASYYKQVLCGVCGSYSGHLYERLTDDLG
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mRNA from alignment at F-serratus_M_contig1214:97327..100360+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1214.1685.1 ID=mRNA_F-serratus_M_contig1214.1685.1|Name=mRNA_F-serratus_M_contig1214.1685.1|organism=Fucus serratus male|type=mRNA|length=3034bp|location=Sequence derived from alignment at F-serratus_M_contig1214:97327..100360+ (Fucus serratus male)
ATGAAGAGCCTTGTAATCTTGATCTTGGGCATCGCTGTGCACTTGGCCTC
TGCCCATCCTCATTGTCACTATGACGAGCGAGAGGTTGACCTTGAAAGGG
AGATGACGTTCTGTTCTATGGAATACGCCGCCGAAGGGGTATGCTGCACC
GAGCTGGAGGAGGTAGCGCTAGAAGACACGTACACAGCTGCGATCGGCGA
TCTTACCACAGAATGTGCTAGCTACTACAAGCAGGTATACATTATGCCTC
TATTCTGGAGTTTTTCCTTTAATTCCTTGTGCTCTTTTGGATATTAGGAA
ACCATATGTAGAACAACTGTTTCGAATAAGGATTGGGTGCAATCTAGTGG
GTCTACGATCGGTTGGAGCGTGGCTGGCGCCATTTTATGTTTGGCTTCAG
CCTTGTGCGACCATTCGTCGGGTTTGTGTTTTGGATTATGGCTTACCTTC
CCTTGTAAAGGTGGCCACAATGACATCGTCGGTCCTATCTCGTTGTGGTT
TGTTTGTGTTTCATCGAGCTGACATTGCGGATTGCTGTGTTTCAACCCCC
ATCACACATGTAGGCAAGTATTGCAACAATATACTGTATTCGGGAACACA
TGGATGGGATAAACGAGAGAAATTCAGAGCACAGAAAAAAGAGCGCACGG
GCCGAAGCAATCGCCACAATTACTTCAAAATAAGGGCTTTTTGTCATTTG
CCTCTTTGTTTCCTCTCCGGTCATCGATTCTCCCATCCGCGAATACTGCT
TCGTATCATTTTTATTAACAGCGTCGTCCTGGAAAGAGCCTATTACTGCA
TCTGGTGTCAAACCCAAACTATTAATATATCGATGTGGTGCTCGTCGTTC
TTTAATATATGTTCTCTCATGTGCCACTGGTTCGTCTTCTCGTCCTTAGC
TCACAAACAACTGTTCGACCCCGATTTTTGTTTATCTTGAGTGCCTGGGT
CTCTCGGAGTTTTGCTCTGAGTTCCCGCACTTTGTCATTTCTTTTGCAAC
GATGTTTAAGATTGTCGGGTCGCCACCATTACTGGTACTTCTATATATAT
ACCTCCATTTACTGTATAGATCTACCGCGCCAAGCGTTGACCACGAGACA
AATCCCGCATTAGAAGACGGCCGTCTCTGCTCGGAACACAGTCAGTTATA
ATGCAATCGCGCTGTGCTTTATACTGCTATTCTAGTTCTACAAGTTTTCA
CATATAATGCTAGAAAAATATAGAGCTAGAGGTGATCTTGCCTTGTCGAG
GAAGCCACGAGGGCCCCAACAAAATGACTGCCTTGAGCGTGTCTTCCTTT
TCGTGTCATCAATATTATGTCGAGGCCAGCGCAATCGCTGGCTTGAGCTT
CCTTTTGCATTTCCCCGCGGAGCAGTTAGTCCCTTTCGTATGTCCTCGCC
TTCTCTCCCTTATCACTTATTTTAGGGCATCGTCCCTGTACATGTTCAAC
TTGAATCTTTCGAATCACGAGGCAGCATTGGAATTCATATCATGACAAAA
AGTCATGCAAGGGAAATACACGCAGGTTTCTAAAATTACGAGAAGAGAAT
ATCGTGCTACTCCTACTGAAAAAATAAGTTGAACCGTCGAGGGGATCGAT
CTCCTGGCTAAATCGATGTTAGCTGTCAAGAATTGATACTGGGTAAGAAT
GGCAGCGCTGGGCGTAAACGAGCCGGGCGTTAAAATTTGGCCTCGATTGT
TTGTATTTGTTTGTGCTTCAAGTCTGCAAAGAGACTTTCAGAAGCGTGAG
AAAACAGCCAGAACGCAACTTGCCATGAGTACTGACACTCGGTTGCATCG
CGCTACGTGAAAATATTGTATTGGCAGTCATCATCATCCCCTCCTCGTCC
CTCGACCTTGCCGCCTTCGTTGAATCCCGTTGAGCAACAATCATGTCTGA
GCTGTTTTCGCTCGTGTGTTAGGGTTGCCCCAGAATAATAAACAATTCGT
ACCACGTAGGGGTAGAGCACACCACGAAGGATTGGCAGTAGTATGTAAGA
AAAGCGAAAAGCGGGAAAAGATAGCAACCAGCAAGGGAGCGAAAGCAAGG
AAATCAAGCAACTCACGCAAAGTCAAGTGTCCAGCAGAAGAGATTGACTA
TTAATACACCCGAGAAGAAAAGAGAGGATGAGTGCCGCAGATGGAAGAAA
AGAGAGGATGAGTGCGTAACACAGACTGAAAAAGAACACAAAAACGAAAT
CCCGCACCCACGATTACGCTGAGTTACTTCTGCCTACTTCAGGGGTGGGG
CTTTACGAAGCAACCTAAGCCCTTCCACCTGTGCTTCTCCGATGGAAGGT
AAAACAACCTCGGCGAAATGTCGACCCAAATCTCCCTATGACCCCGTCCT
CCTCTTGCGCAGCACCCTGAACATCAGAAGACGTCACGAAACAGCTACTT
ATCGTATAGCTGAATGCTGTCCAATAATATGGTCTCTATTGTGTGAGGTC
TGCCTTGTACTGTTGTTGTTGTGGTGTTGTACCCGTTTGAGAGACACGAA
CCAATAATCCGTCCGACTCAGGGAGTTTCTTGCCCACTGTTGTACGGTGC
TGCAGACTTTCTCTCCCCAAAGTACCCAAATCATTCCGCCGAAGAATTCC
TGGTTTGAGGTTTCGCGTTTTGAAGGTGTTTTGGGAGTTTCATGGCTTCA
TGACGAGTTGTGCACAACTGAAGCATCGTGCGTCGTTGGCGGTTTACTCA
AAGAGGCTATACATGTTTTAGGGTAGTCGCCAACAAGCTGCGTACGCGTA
ACGAGACGACCTTCTCTGGAGCTAGGATGATGTGGAAAATCGTCGAAGCT
CTTTGTAGTTTAACTTCTTTTTCTTTCCAACAGTTGTAGGAGTGTAAAAA
AATACAGTCTCGAGAAACTCATAGATCGAGAGTAAAAAGTAATTGAATGT
ACAGTGGATATGAGACGTGTGCACTCTCTCGCTCACGCCTGTCTCTTTTT
TTTTTTTTTTTTGCGCAGGTACTGTGCGGCGTCTGCGGATCCTACAGTGG
GCACCTCTACGAGCGTCTAACCGACGACCTCGGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1214:97327..100360+

>mRNA_F-serratus_M_contig1214.1685.1 ID=mRNA_F-serratus_M_contig1214.1685.1|Name=mRNA_F-serratus_M_contig1214.1685.1|organism=Fucus serratus male|type=CDS|length=600bp|location=Sequence derived from alignment at F-serratus_M_contig1214:97327..100360+ (Fucus serratus male)
ATGAAGAGCCTTGTAATCTTGATCTTGGGCATCGCTGTGCACTTGGCCTC
TGCCCATCCTCATTGTCACTATGACGAGCGAGAGGTTGACCTTGAAAGGG
AGATGACGTTCTGTTCTATGGAATACGCCGCCGAAGGGGTATGCTGCACC
GAGCTGGAGGAGGTAGCGCTAGAAGACACGTACACAGCTGCGATCGGCGA
TCTTACCACAGAATGTGCTAGCTACTACAAGCAGATGAAGAGCCTTGTAA
TCTTGATCTTGGGCATCGCTGTGCACTTGGCCTCTGCCCATCCTCATTGT
CACTATGACGAGCGAGAGGTTGACCTTGAAAGGGAGATGACGTTCTGTTC
TATGGAATACGCCGCCGAAGGGGTATGCTGCACCGAGCTGGAGGAGGTAG
CGCTAGAAGACACGTACACAGCTGCGATCGGCGATCTTACCACAGAATGT
GCTAGCTACTACAAGCAGGTACTGTGCGGCGTCTGCGGATCCTACAGTGG
GCACCTCTACGAGCGTCTAACCGACGACCTCGGGGTACTGTGCGGCGTCT
GCGGATCCTACAGTGGGCACCTCTACGAGCGTCTAACCGACGACCTCGGG
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