mRNA_F-serratus_M_contig1211.1675.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1211.1675.1
Unique NamemRNA_F-serratus_M_contig1211.1675.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1211.1675.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1211contigF-serratus_M_contig1211:250500..251500 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRNA pseudouridylate synthase domain-containing protein (C-terminal) RNA pseudouridylate synthase dom
Ec32 orthologEc-15_000880.1
Exons2
Model size294
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929132.7348735-CDS-F-serratus_M_contig1211:250499..2505271622929132.7348735-CDS-F-serratus_M_contig1211:250499..250527Fucus serratus maleCDSF-serratus_M_contig1211 250500..250527 +
1690962717.7732701-CDS-F-serratus_M_contig1211:250499..2505271690962717.7732701-CDS-F-serratus_M_contig1211:250499..250527Fucus serratus maleCDSF-serratus_M_contig1211 250500..250527 +
1622929132.749401-CDS-F-serratus_M_contig1211:251235..2514981622929132.749401-CDS-F-serratus_M_contig1211:251235..251498Fucus serratus maleCDSF-serratus_M_contig1211 251236..251498 +
1690962717.7876172-CDS-F-serratus_M_contig1211:251235..2514981690962717.7876172-CDS-F-serratus_M_contig1211:251235..251498Fucus serratus maleCDSF-serratus_M_contig1211 251236..251498 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1211.1675.1prot_F-serratus_M_contig1211.1675.1Fucus serratus malepolypeptideF-serratus_M_contig1211 250500..251498 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1211.1675.1

>prot_F-serratus_M_contig1211.1675.1 ID=prot_F-serratus_M_contig1211.1675.1|Name=mRNA_F-serratus_M_contig1211.1675.1|organism=Fucus serratus male|type=polypeptide|length=97bp
LVENVEKSIDPLVEMLLIARRARKPCPPGASSAPASISSMFAWTPAPPRN
SSPGRGTRTSGIFLFSSNAHCSLQRRAPRGLVQTTPPIIAPKPLVQR
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mRNA from alignment at F-serratus_M_contig1211:250500..251500+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1211.1675.1 ID=mRNA_F-serratus_M_contig1211.1675.1|Name=mRNA_F-serratus_M_contig1211.1675.1|organism=Fucus serratus male|type=mRNA|length=1001bp|location=Sequence derived from alignment at F-serratus_M_contig1211:250500..251500+ (Fucus serratus male)
CTGGTTGAAAACGTGGAAAAGAGTATTGGTGAGCAAAGTAGGCCTTTGCA
GATGATGGTCTAAGTTGGCTGTTATAAATTTACTTCGCGGCAATCTCTGG
GCCACATCAGTTGATGCATTGGTGGATGACGGCGTGAAACCTGCACTAAT
GCTCTGACCACACACTCAAGTTCCTGGTAGTAGCATACCACCTACGGGTG
GGAAAGCCCCTTGCTCCGTCTGTCGTTCCTGCTTGTTTTGGGAGGGTCAG
ATCCACATTGGAGCGAGCAAGTTTCAGAATTCCACACTTTCCTAGCTGGA
GTTTTGTTACATGAAAGAATCCAGTCCCTTCGTCCAACACTAGCTGTCGT
TTACTCCGGAGTAGTGTGTTTCACAATCTAGTAAATGTACTGACTGGACC
CAGCCGTTGTTGCAAAAACAGGACTCAAGTACTATTAATAGAGAGTACTG
TGTTTTCCTGCCTCGCTGCCAGAGACGCATCTGTGTACGAGACAATCAGC
GAGCCTGCGCAGAAAACCCGTAGGCACGATGTGCTCTCTGCCAGTAGTGC
AAGTCCGTCGCGTCGTTGCACCTCATGTAATCGGTGATCCCAAACTGCTT
TATTCTCCGAAGGTTAGCTTCGAACGACGGTTACGATATTCCGAAAATAA
ACGAGCCACTTTTCTCGCGCCGCAGTAAATAAACCTTACAATGCCACACC
TCCACCGCTCAATGCAACCGTGACCGTGCTCGCCAGATCCTCTCGTCGAG
ATGTTACTGATCGCACGACGAGCCCGGAAACCATGCCCCCCCGGCGCCTC
GTCGGCGCCAGCATCAATATCGTCGATGTTCGCGTGGACACCAGCGCCAC
CTCGAAACTCCTCGCCGGGACGAGGTACAAGAACCTCTGGCATATTTTTA
TTCTCGTCGAACGCTCACTGCTCTCTTCAACGGAGAGCGCCACGAGGGCT
CGTACAGACTACACCCCCAATAATTGCCCCCAAACCTCTTGTCCAGCGAA
G
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Coding sequence (CDS) from alignment at F-serratus_M_contig1211:250500..251500+

>mRNA_F-serratus_M_contig1211.1675.1 ID=mRNA_F-serratus_M_contig1211.1675.1|Name=mRNA_F-serratus_M_contig1211.1675.1|organism=Fucus serratus male|type=CDS|length=582bp|location=Sequence derived from alignment at F-serratus_M_contig1211:250500..251500+ (Fucus serratus male)
CTGGTTGAAAACGTGGAAAAGAGTATTGCTGGTTGAAAACGTGGAAAAGA
GTATTGATCCTCTCGTCGAGATGTTACTGATCGCACGACGAGCCCGGAAA
CCATGCCCCCCCGGCGCCTCGTCGGCGCCAGCATCAATATCGTCGATGTT
CGCGTGGACACCAGCGCCACCTCGAAACTCCTCGCCGGGACGAGGTACAA
GAACCTCTGGCATATTTTTATTCTCGTCGAACGCTCACTGCTCTCTTCAA
CGGAGAGCGCCACGAGGGCTCGTACAGACTACACCCCCAATAATTGCCCC
CAAACCTCTTGTCCAGCGAATCCTCTCGTCGAGATGTTACTGATCGCACG
ACGAGCCCGGAAACCATGCCCCCCCGGCGCCTCGTCGGCGCCAGCATCAA
TATCGTCGATGTTCGCGTGGACACCAGCGCCACCTCGAAACTCCTCGCCG
GGACGAGGTACAAGAACCTCTGGCATATTTTTATTCTCGTCGAACGCTCA
CTGCTCTCTTCAACGGAGAGCGCCACGAGGGCTCGTACAGACTACACCCC
CAATAATTGCCCCCAAACCTCTTGTCCAGCGA
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