mRNA_F-serratus_M_contig1211.1670.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1211.1670.1
Unique NamemRNA_F-serratus_M_contig1211.1670.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1211.1670.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1211contigF-serratus_M_contig1211:221984..224484 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size595
Cds size594
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1211.1670.1prot_F-serratus_M_contig1211.1670.1Fucus serratus malepolypeptideF-serratus_M_contig1211 221984..224484 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929133.7130525-CDS-F-serratus_M_contig1211:221983..2221611622929133.7130525-CDS-F-serratus_M_contig1211:221983..222161Fucus serratus maleCDSF-serratus_M_contig1211 221984..222161 +
1690962718.136935-CDS-F-serratus_M_contig1211:221983..2221611690962718.136935-CDS-F-serratus_M_contig1211:221983..222161Fucus serratus maleCDSF-serratus_M_contig1211 221984..222161 +
1622929133.7249706-CDS-F-serratus_M_contig1211:222682..2228241622929133.7249706-CDS-F-serratus_M_contig1211:222682..222824Fucus serratus maleCDSF-serratus_M_contig1211 222683..222824 +
1690962718.1468887-CDS-F-serratus_M_contig1211:222682..2228241690962718.1468887-CDS-F-serratus_M_contig1211:222682..222824Fucus serratus maleCDSF-serratus_M_contig1211 222683..222824 +
1622929133.7352684-CDS-F-serratus_M_contig1211:223555..2237571622929133.7352684-CDS-F-serratus_M_contig1211:223555..223757Fucus serratus maleCDSF-serratus_M_contig1211 223556..223757 +
1690962718.1554317-CDS-F-serratus_M_contig1211:223555..2237571690962718.1554317-CDS-F-serratus_M_contig1211:223555..223757Fucus serratus maleCDSF-serratus_M_contig1211 223556..223757 +
1622929133.7476993-CDS-F-serratus_M_contig1211:224412..2244841622929133.7476993-CDS-F-serratus_M_contig1211:224412..224484Fucus serratus maleCDSF-serratus_M_contig1211 224413..224484 +
1690962718.1701748-CDS-F-serratus_M_contig1211:224412..2244841690962718.1701748-CDS-F-serratus_M_contig1211:224412..224484Fucus serratus maleCDSF-serratus_M_contig1211 224413..224484 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1211.1670.1

>prot_F-serratus_M_contig1211.1670.1 ID=prot_F-serratus_M_contig1211.1670.1|Name=mRNA_F-serratus_M_contig1211.1670.1|organism=Fucus serratus male|type=polypeptide|length=198bp
GRRRKAKALVRDDEATDDDNVKASRPEEEEKREKLGRGRRSQGKGKAKAT
QAKEAEVGKGEEPKKKGGGAATGSTERSEMTTTKKRLTLEWVCPRCGGHF
KGQQASVYHIVKKVCDKVLTTLYSREGKYWDGKQKVILSEEVIAKPVGFF
SPPHPTLAALGELNDVAARSMAAKLGDAQTATCKFCERFFSTKAGYK*
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mRNA from alignment at F-serratus_M_contig1211:221984..224484+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1211.1670.1 ID=mRNA_F-serratus_M_contig1211.1670.1|Name=mRNA_F-serratus_M_contig1211.1670.1|organism=Fucus serratus male|type=mRNA|length=2501bp|location=Sequence derived from alignment at F-serratus_M_contig1211:221984..224484+ (Fucus serratus male)
GGACGGAGAAGGAAGGCGAAAGCGCTCGTCAGAGACGACGAGGCTACAGA
CGATGACAATGTTAAGGCGTCTCGCCCAGAGGAGGAAGAGAAGAGGGAGA
AACTGGGCCGGGGAAGGCGCTCGCAGGGGAAAGGGAAGGCCAAAGCTACC
CAGGCGAAGGAGGCCGAAGTCGGCAAAGGTGAGCGAGGCGGCATCGTTTT
CTTGACCCGACCAGGTATCGTGGTTTTTCAGCGGTTTGGGACTGCGGCCT
CGGGTCAGCTCTTGGACTACCGGCTCGATTTTTTGCCGCAACAAGAGTGG
TGGCGACACAGTATTTCCACATAATCTGAGAGGTCGATACACTTTTCCCC
GTCTTATGTTTTCGCGTGTGTGGGTTGAGTCACGGTGCCCATGTCTGTTC
CTAGGCGACACCGCTTGTGGTAGTGGTGGATGGTTGCCTCTATTGATGCG
GAAAAGGGCTCTTGGGGCACTCTCGTGTAGTGATTTTCCTCGACACCGTG
TGTAAAGTACAGCAGCAGCATTGTAGTTTCCTCTTCCATTTCTGTGTACC
AGTGCCTCTTTGGCTTTGTCGACTGGAGATACGAGAGATACAGCAGTAAA
GCGAGTCTAAAATATAACCCCTGAAATATGATTGGTTGAATCACCCCCCA
CCCTCCGATCTCTCCGAACTGATTGGCTCTTGCAACGTTGCGGGGGAAGG
CGAGGAACCCAAGAAGAAAGGAGGTGGAGCTGCTACCGGGAGTACGGAGC
GGAGCGAAATGACAACGACCAAGAAAAGACTTACTCTCGAGTGGGTGTGT
CCCAGATGCGGGGGTCACTTCAAGGGGCAGCAGGCGTCGGTGTGAGTGCA
GCGGGAAGGTTATGTTTGAGGGGATCGAGCTCGGGGGGGGGGGGGTCTCA
AGAACAAATGCGCCTCCTCGATTATGCCATAGGTGGCACGTAAGGGGTTT
CGTCTGTTTGTCCTTATCTTTTTCAACCATGTCTTTTTCTTTAGGTGCCT
TTTTCTGCCGATACCTTTTCTTGTCGATGCCTTCTTTTTGGGAGTACTTT
CTTCAACGTTGTCGCCCGACCTGCGTCATTACGGATTCTTGCCGCGAGCG
AAGGTCGTTCAGCACGCGAGTAGCTATTTACCGAAGGATTTTATGGATTG
TGGATTTCTCGGCTTGGCGCTTTGCCCTTCTACCTCCACCCCCCTTCATT
CACGCCTTCTACGTGCGTGGTACTACGTTCATTGCCTATGATATTATCCA
GGGAGGCTCCTCCTTGCTTTTGTTTCCAATACGCTTGTAACCGTATACTG
CTTATTATCTTCCTGTCGCAGTACTTCAATCATAAGGACTATAATAACAG
CATGAAAGATGCCGTATCACGTCATTCCAGCCGAGGTCGACGACCCCCCC
CCCCCCCGCCTTCCAGAGATATATCCCTATCCCCGCCCCTTCCCCTATCC
CCTATCCCCTCCCTCCTCTCTCGTTTTAATCTCACCATTTTTTTCCCGTT
TCTCGGTCGCCGGACTTGTATCTCGCCCCGTTCCACGCGGCGTGCTGCTC
GCTTCCTCGCTTTCCGCACAAGGTATCACATCGTTAAAAAGGTCTGCGAC
AAAGTACTGACCACCCTGTACTCCAGGGAAGGGAAGTACTGGGACGGCAA
GCAGAAGGTCATCCTATCGGAAGAAGTTATTGCGAAGCCCGTAGGGTTCT
TCTCGCCCCCTCACCCCACGCTAGCGGCGCTCGGGGAGTTGAACGACGTT
GCGGCGCGTTCGATGGCAGCCAAGGCGAGTCGAGTCGTCTCTTGCTCTCT
CTTTCAAATGTTTTATGTCCAATCTTGTTTTTTGCACAGTGTTCGTTTTT
TTGGTGTTTATAGAGAGCTGTGTTGCTTTTTTCAGGGAGGGGTGATTTCA
GGAACCCTTTTTAATGCGGTCTAAGAGGCAAAGCTGTCCCTGGCTCTCTC
TTTCCATCTTGTTCGTCCTGGAGTATTTATTGTTGCGACTTTTGTGTGTG
TGTTTCTCTCTCACTGTCCCTCTCTCTTCGTGTCTCTTAAGTAATGGCAC
TTTTCATGTTCCGTTTCAATTTTTCTTGTGTGTGTGTTTTTTTGCATTTG
TTTTATGGTGGGTCTCCCCCCCGCCGTACTCCCTATTGCCGTGTGCAGTC
GATCGCAAGCGGGATTTGCTTGCTACTCACCGTCGTGTTTATCAAAGTTC
GTACATGCAGCGGGAGCAGCTCGAGTTGACCAAACCCTTTACCCTCAGAA
ACCGAGAAACATGCCAACCTTCACGCCTTGCTCGTCCTTGCTGTTGTACA
ACGGGCGCAACAGCGTGCGTACCTCAACAGCGGTATGGAGGGGCACTAAT
ACACTGTACTAATGTTGATATTAAACTCTACTTGTGTCTGGCTCTGTTCT
CCTCTGTCCTCCCCCCCCCCCCGCGCCAGCTCGGGGACGCTCAAACAGCC
ACGTGCAAATTCTGCGAAAGGTTTTTCTCAACCAAAGCCGGATACAAGTG
A
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Coding sequence (CDS) from alignment at F-serratus_M_contig1211:221984..224484+

>mRNA_F-serratus_M_contig1211.1670.1 ID=mRNA_F-serratus_M_contig1211.1670.1|Name=mRNA_F-serratus_M_contig1211.1670.1|organism=Fucus serratus male|type=CDS|length=1188bp|location=Sequence derived from alignment at F-serratus_M_contig1211:221984..224484+ (Fucus serratus male)
GGACGGAGAAGGAAGGCGAAAGCGCTCGTCAGAGACGACGAGGCTACAGA
CGATGACAATGTTAAGGCGTCTCGCCCAGAGGAGGAAGAGAAGAGGGAGA
AACTGGGCCGGGGAAGGCGCTCGCAGGGGAAAGGGAAGGCCAAAGCTACC
CAGGCGAAGGAGGCCGAAGTCGGCAAAGGGACGGAGAAGGAAGGCGAAAG
CGCTCGTCAGAGACGACGAGGCTACAGACGATGACAATGTTAAGGCGTCT
CGCCCAGAGGAGGAAGAGAAGAGGGAGAAACTGGGCCGGGGAAGGCGCTC
GCAGGGGAAAGGGAAGGCCAAAGCTACCCAGGCGAAGGAGGCCGAAGTCG
GCAAAGGCGAGGAACCCAAGAAGAAAGGAGGTGGAGCTGCTACCGGGAGT
ACGGAGCGGAGCGAAATGACAACGACCAAGAAAAGACTTACTCTCGAGTG
GGTGTGTCCCAGATGCGGGGGTCACTTCAAGGGGCAGCAGGCGTCGGTGC
GAGGAACCCAAGAAGAAAGGAGGTGGAGCTGCTACCGGGAGTACGGAGCG
GAGCGAAATGACAACGACCAAGAAAAGACTTACTCTCGAGTGGGTGTGTC
CCAGATGCGGGGGTCACTTCAAGGGGCAGCAGGCGTCGGTGTATCACATC
GTTAAAAAGGTCTGCGACAAAGTACTGACCACCCTGTACTCCAGGGAAGG
GAAGTACTGGGACGGCAAGCAGAAGGTCATCCTATCGGAAGAAGTTATTG
CGAAGCCCGTAGGGTTCTTCTCGCCCCCTCACCCCACGCTAGCGGCGCTC
GGGGAGTTGAACGACGTTGCGGCGCGTTCGATGGCAGCCAAGGTATCACA
TCGTTAAAAAGGTCTGCGACAAAGTACTGACCACCCTGTACTCCAGGGAA
GGGAAGTACTGGGACGGCAAGCAGAAGGTCATCCTATCGGAAGAAGTTAT
TGCGAAGCCCGTAGGGTTCTTCTCGCCCCCTCACCCCACGCTAGCGGCGC
TCGGGGAGTTGAACGACGTTGCGGCGCGTTCGATGGCAGCCAAGCTCGGG
GACGCTCAAACAGCCACGTGCAAATTCTGCGAAAGGTTTTTCTCAACCAA
AGCCGGATACAAGTGACTCGGGGACGCTCAAACAGCCACGTGCAAATTCT
GCGAAAGGTTTTTCTCAACCAAAGCCGGATACAAGTGA
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