mRNA_F-serratus_M_contig1210.1662.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1210.1662.1
Unique NamemRNA_F-serratus_M_contig1210.1662.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1210.1662.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1210contigF-serratus_M_contig1210:72044..72599 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size556
Cds size381
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929129.0788918-CDS-F-serratus_M_contig1210:72043..724241622929129.0788918-CDS-F-serratus_M_contig1210:72043..72424Fucus serratus maleCDSF-serratus_M_contig1210 72044..72424 +
1690962717.481717-CDS-F-serratus_M_contig1210:72043..724241690962717.481717-CDS-F-serratus_M_contig1210:72043..72424Fucus serratus maleCDSF-serratus_M_contig1210 72044..72424 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929131.6229374-UTR-F-serratus_M_contig1210:72424..725991622929131.6229374-UTR-F-serratus_M_contig1210:72424..72599Fucus serratus maleUTRF-serratus_M_contig1210 72425..72599 +
1690962717.4923244-UTR-F-serratus_M_contig1210:72424..725991690962717.4923244-UTR-F-serratus_M_contig1210:72424..72599Fucus serratus maleUTRF-serratus_M_contig1210 72425..72599 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1210.1662.1prot_F-serratus_M_contig1210.1662.1Fucus serratus malepolypeptideF-serratus_M_contig1210 72044..72424 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1210.1662.1

>prot_F-serratus_M_contig1210.1662.1 ID=prot_F-serratus_M_contig1210.1662.1|Name=mRNA_F-serratus_M_contig1210.1662.1|organism=Fucus serratus male|type=polypeptide|length=127bp
MQGGCCLLLHGVVERSDAVASRELRSHPRILLLLVVVVVVVVSPPHLLLL
VLLRSLTHHGSCSLHSCHKARCSERGARRLCGLVGRTAVLGVLWGCFEVV
VPSHRSPHFAVLEISENFCPRPARFM*
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mRNA from alignment at F-serratus_M_contig1210:72044..72599+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1210.1662.1 ID=mRNA_F-serratus_M_contig1210.1662.1|Name=mRNA_F-serratus_M_contig1210.1662.1|organism=Fucus serratus male|type=mRNA|length=556bp|location=Sequence derived from alignment at F-serratus_M_contig1210:72044..72599+ (Fucus serratus male)
ATGCAGGGCGGCTGTTGCTTGCTGCTTCACGGTGTTGTTGAGAGGAGCGA
CGCAGTGGCTAGCCGGGAGCTACGCAGCCATCCCCGTATTTTGCTCCTGC
TGGTGGTGGTGGTTGTGGTGGTGGTTAGCCCCCCGCACTTGCTGTTACTG
GTGTTGCTGCGGTCTCTGACGCATCACGGCTCATGTTCGCTTCACTCATG
TCACAAGGCCCGTTGTTCGGAGCGTGGCGCGAGGCGGCTGTGTGGTCTGG
TGGGGAGGACTGCTGTGTTGGGAGTGCTTTGGGGTTGCTTCGAGGTTGTT
GTGCCGTCACACAGATCGCCTCATTTCGCCGTTTTGGAAATTTCTGAGAA
CTTTTGCCCTCGACCAGCCCGTTTCATGTGAGCTTTTCGATCATTTTAAG
GAACGAGAGGATTAAAATTATTTCGGCGGAGGGAACAAGAATAAGGGAAC
TGCGGCGGCCGAACCTCTTTCCAGGAAAGTTATGTTTGTCGTTGACCAAT
CATAGAGGGATTCGAAGTTCCACGTTCCATGCGCTTTTTTTTATCTAATA
CCCGCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1210:72044..72599+

>mRNA_F-serratus_M_contig1210.1662.1 ID=mRNA_F-serratus_M_contig1210.1662.1|Name=mRNA_F-serratus_M_contig1210.1662.1|organism=Fucus serratus male|type=CDS|length=762bp|location=Sequence derived from alignment at F-serratus_M_contig1210:72044..72599+ (Fucus serratus male)
ATGCAGGGCGGCTGTTGCTTGCTGCTTCACGGTGTTGTTGAGAGGAGCGA
CGCAGTGGCTAGCCGGGAGCTACGCAGCCATCCCCGTATTTTGCTCCTGC
TGGTGGTGGTGGTTGTGGTGGTGGTTAGCCCCCCGCACTTGCTGTTACTG
GTGTTGCTGCGGTCTCTGACGCATCACGGCTCATGTTCGCTTCACTCATG
TCACAAGGCCCGTTGTTCGGAGCGTGGCGCGAGGCGGCTGTGTGGTCTGG
TGGGGAGGACTGCTGTGTTGGGAGTGCTTTGGGGTTGCTTCGAGGTTGTT
GTGCCGTCACACAGATCGCCTCATTTCGCCGTTTTGGAAATTTCTGAGAA
CTTTTGCCCTCGACCAGCCCGTTTCATGTGAATGCAGGGCGGCTGTTGCT
TGCTGCTTCACGGTGTTGTTGAGAGGAGCGACGCAGTGGCTAGCCGGGAG
CTACGCAGCCATCCCCGTATTTTGCTCCTGCTGGTGGTGGTGGTTGTGGT
GGTGGTTAGCCCCCCGCACTTGCTGTTACTGGTGTTGCTGCGGTCTCTGA
CGCATCACGGCTCATGTTCGCTTCACTCATGTCACAAGGCCCGTTGTTCG
GAGCGTGGCGCGAGGCGGCTGTGTGGTCTGGTGGGGAGGACTGCTGTGTT
GGGAGTGCTTTGGGGTTGCTTCGAGGTTGTTGTGCCGTCACACAGATCGC
CTCATTTCGCCGTTTTGGAAATTTCTGAGAACTTTTGCCCTCGACCAGCC
CGTTTCATGTGA
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