mRNA_F-serratus_M_contig121.1643.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig121.1643.1
Unique NamemRNA_F-serratus_M_contig121.1643.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig121.1643.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig121contigF-serratus_M_contig121:197834..199440 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size387
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig121.1643.1prot_F-serratus_M_contig121.1643.1Fucus serratus malepolypeptideF-serratus_M_contig121 197837..199368 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929124.7923725-UTR-F-serratus_M_contig121:197833..1978361622929124.7923725-UTR-F-serratus_M_contig121:197833..197836Fucus serratus maleUTRF-serratus_M_contig121 197834..197836 +
1690962715.298584-UTR-F-serratus_M_contig121:197833..1978361690962715.298584-UTR-F-serratus_M_contig121:197833..197836Fucus serratus maleUTRF-serratus_M_contig121 197834..197836 +
1622929124.8371906-UTR-F-serratus_M_contig121:199368..1994401622929124.8371906-UTR-F-serratus_M_contig121:199368..199440Fucus serratus maleUTRF-serratus_M_contig121 199369..199440 +
1690962715.3269804-UTR-F-serratus_M_contig121:199368..1994401690962715.3269804-UTR-F-serratus_M_contig121:199368..199440Fucus serratus maleUTRF-serratus_M_contig121 199369..199440 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929124.811015-CDS-F-serratus_M_contig121:197836..1981321622929124.811015-CDS-F-serratus_M_contig121:197836..198132Fucus serratus maleCDSF-serratus_M_contig121 197837..198132 +
1690962715.3093884-CDS-F-serratus_M_contig121:197836..1981321690962715.3093884-CDS-F-serratus_M_contig121:197836..198132Fucus serratus maleCDSF-serratus_M_contig121 197837..198132 +
1622929124.8230913-CDS-F-serratus_M_contig121:199352..1993681622929124.8230913-CDS-F-serratus_M_contig121:199352..199368Fucus serratus maleCDSF-serratus_M_contig121 199353..199368 +
1690962715.317362-CDS-F-serratus_M_contig121:199352..1993681690962715.317362-CDS-F-serratus_M_contig121:199352..199368Fucus serratus maleCDSF-serratus_M_contig121 199353..199368 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig121.1643.1

>prot_F-serratus_M_contig121.1643.1 ID=prot_F-serratus_M_contig121.1643.1|Name=mRNA_F-serratus_M_contig121.1643.1|organism=Fucus serratus male|type=polypeptide|length=104bp
MTESAGSELQVESDSESAAESAAVAIAESAVMSASPEAKGGPTSFSVNGE
EQRQHGEVAGGDGNCSEDDISFAARHGGRGYGGGAALPGLSDFASDSRSY
NLF*
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mRNA from alignment at F-serratus_M_contig121:197834..199440+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig121.1643.1 ID=mRNA_F-serratus_M_contig121.1643.1|Name=mRNA_F-serratus_M_contig121.1643.1|organism=Fucus serratus male|type=mRNA|length=1607bp|location=Sequence derived from alignment at F-serratus_M_contig121:197834..199440+ (Fucus serratus male)
AAGATGACGGAATCAGCGGGATCGGAATTGCAGGTGGAATCAGACTCGGA
ATCGGCGGCGGAATCGGCGGCGGTGGCGATTGCGGAATCGGCGGTGATGT
CAGCGTCGCCGGAGGCCAAGGGGGGTCCCACCAGTTTTTCTGTGAACGGC
GAGGAGCAGCGACAGCACGGTGAGGTGGCTGGAGGCGATGGGAACTGCTC
AGAGGACGATATATCTTTCGCGGCGAGGCATGGAGGGAGAGGTTACGGTG
GGGGTGCGGCGCTGCCGGGGCTGAGCGATTTCGCTTCGGACAGCCGCAGG
TGTGAAGAGTAGGTTAGAGTGGAAGTGCTGCTGCAGTTTTTTTTTGTTTT
TCTCCCTTTTCAAGGAGTGTATGTGACTTTTGGTTCATATCAGGTCAATC
GATGCTTGGTTGGGGAGAGTTATAACGGTGCGAAGACTTGGATGGGTGGA
AGAGAACGTGGCGAAATAACGGCGTGGCATGGCGCGTCGTTTGGTCCCCT
GGAGAGAGACGCCCCTGCCTCCCCCCCGCCGCCCTCACTTACCCCTGCCG
ATGTTGAGTGATAAATACCAGTATATACCTTTTAAACTGGTATAAAAAAT
ATATGAACGCATGTAAACCTTGCGACTCTTGTGGCTGTGGGCACCCACCC
AATAAGGGGGGAAGTCAAAACGTTTAGTAGCAGGAAACATTGGCTGCAAG
GCAAGGACAAAAACACTTTTGAGGTTTTAAGGGGGTCCCCAACTTTAGTA
TTTGAATGTCAATAGGGTCAGCAGTATAATAACGGGGAGAAATCCCCGTT
AAATTGAACATTTATATTAATCGCTATATAACATGCAGGTACACCTAGAC
AGAGGCAAAAGCACACGATGAACCTGGATCTAACTCAGTTATTGTGAGAT
ATTGGGTTTAGGATCGGGTTCAAGTGTTTGGGATGGTGTTGTTAAGTATT
AGTGAGTCGAAGTTGAGTGTAACATTTACTATCTATTAATAGTCCCATAG
GCAGCCAGACAATTCGGAACCTTATGTTGCATTACTTCATTCCTAGACCC
GCTACGTGAAACTATTTCAAGACAGAGAAGGACCAGAGACATTTGTAGAT
AAAAAAAAAATCAACGCTGTCAACAGTGAGTGACGCTCTTGATCGTGAAC
GTGAATAGATTTCAGTATCTAAGGGAAACCGCTGCGTCAAATCGTATTGG
AGAGATACGTGTCGCCGAAAAAAACCCATCGTAGTGCCTTAAACAGCGCC
CCCCCCCCCCCCCTCCCCTCCCCTCCCTTCCTCCCACCCGCCCTTACGCG
CTGTATGTCTCTCTCTAGAAGGGACCGTATAAATACGTTTGCTTGAGAGC
GCAACTCTCTGTTCAAGCGCTGTACTCTACACCATACACCATGTTCCGTT
CGTTAATTTGTACCAGCTAACGCTCAAGTCGAGCTTAAAAACAGCTCGTC
CTCCACTCACGCCCCCCGCCGCTGCCTATGATTGTGTCTTCTGATCCCCG
TCACTGTAAACATCGACAGTTACAACCTTTTCTGAGCGGGACGGCCGCCA
GGCGTTTTGCAGAAGAAGAGAGGCGTGCAGGATGCGGGATCTGGGGTGAT
TATGGGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig121:197834..199440+

>mRNA_F-serratus_M_contig121.1643.1 ID=mRNA_F-serratus_M_contig121.1643.1|Name=mRNA_F-serratus_M_contig121.1643.1|organism=Fucus serratus male|type=CDS|length=624bp|location=Sequence derived from alignment at F-serratus_M_contig121:197834..199440+ (Fucus serratus male)
ATGACGGAATCAGCGGGATCGGAATTGCAGGTGGAATCAGACTCGGAATC
GGCGGCGGAATCGGCGGCGGTGGCGATTGCGGAATCGGCGGTGATGTCAG
CGTCGCCGGAGGCCAAGGGGGGTCCCACCAGTTTTTCTGTGAACGGCGAG
GAGCAGCGACAGCACGGTGAGGTGGCTGGAGGCGATGGGAACTGCTCAGA
GGACGATATATCTTTCGCGGCGAGGCATGGAGGGAGAGGTTACGGTGGGG
GTGCGGCGCTGCCGGGGCTGAGCGATTTCGCTTCGGACAGCCGCAGATGA
CGGAATCAGCGGGATCGGAATTGCAGGTGGAATCAGACTCGGAATCGGCG
GCGGAATCGGCGGCGGTGGCGATTGCGGAATCGGCGGTGATGTCAGCGTC
GCCGGAGGCCAAGGGGGGTCCCACCAGTTTTTCTGTGAACGGCGAGGAGC
AGCGACAGCACGGTGAGGTGGCTGGAGGCGATGGGAACTGCTCAGAGGAC
GATATATCTTTCGCGGCGAGGCATGGAGGGAGAGGTTACGGTGGGGGTGC
GGCGCTGCCGGGGCTGAGCGATTTCGCTTCGGACAGCCGCAGTTACAACC
TTTTCTGATTACAACCTTTTCTGA
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