mRNA_F-serratus_M_contig1206.1627.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1206.1627.1
Unique NamemRNA_F-serratus_M_contig1206.1627.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1206.1627.1 vs. uniprot
Match: A0A7S2R922_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R922_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 3.180e-5
Identity = 26/34 (76.47%), Postives = 28/34 (82.35%), Query Frame = 3 
Query:   21 EANYRGRSRYYMGRIIRAKAD*RFDIDYDDEEKE 122
            EA YRG+SRYY GRI RA+AD  FDIDYDD EKE
Sbjct:   12 EARYRGKSRYYPGRIARARADGTFDIDYDDGEKE 45
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1206.1627.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S2R922_9STRA3.180e-576.47Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1206contigF-serratus_M_contig1206:79085..80009 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.3
Seed ortholog evalue3.6e-08
Seed eggNOG ortholog2880.D8LEH4
Preferred nameCDA
KEGG rclassRC00074,RC00514
KEGG koko:K01489
KEGG ReactionR01878,R02485,R08221
KEGG Pathwayko00240,ko00983,ko01100,map00240,map00983,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0001558,GO:0001775,GO:0001882,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004126,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006140,GO:0006206,GO:0006213,GO:0006216,GO:0006217,GO:0006725,GO:0006807,GO:0006810,GO:0006887,GO:0006955,GO:0007154,GO:0007165,GO:0007166,GO:0007275,GO:0008150,GO:0008152,GO:0008270,GO:0008655,GO:0009056,GO:0009058,GO:0009112,GO:0009116,GO:0009119,GO:0009120,GO:0009163,GO:0009164,GO:0009451,GO:0009790,GO:0009792,GO:0009892,GO:0009972,GO:0009987,GO:0010563,GO:0012505,GO:0016043,GO:0016070,GO:0016192,GO:0016787,GO:0016810,GO:0016814,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019239,GO:0019438,GO:0019439,GO:0019858,GO:0022607,GO:0023052,GO:0030141,GO:0030308,GO:0031323,GO:0031324,GO:0031410,GO:0031974,GO:0031982,GO:0031983,GO:0032501,GO:0032502,GO:0032940,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0034656,GO:0034774,GO:0036094,GO:0036230,GO:0040008,GO:0042119,GO:0042454,GO:0042455,GO:0042802,GO:0042803,GO:0043094,GO:0043097,GO:0043167,GO:0043169,GO:0043170,GO:0043174,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0045926,GO:0045934,GO:0045936,GO:0045980,GO:0046087,GO:0046092,GO:0046108,GO:0046109,GO:0046121,GO:0046125,GO:0046127,GO:0046131,GO:0046132,GO:0046133,GO:0046134,GO:0046135,GO:0046483,GO:0046700,GO:0046872,GO:0046903,GO:0046914,GO:0046983,GO:0047844,GO:0048519,GO:0048523,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051172,GO:0051174,GO:0051179,GO:0051234,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0051716,GO:0055086,GO:0060205,GO:0062012,GO:0062014,GO:0065003,GO:0065007,GO:0070013,GO:0070820,GO:0071704,GO:0071840,GO:0072527,GO:0072528,GO:0072529,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0097708,GO:0099503,GO:0101002,GO:1901135,GO:1901136,GO:1901137,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901657,GO:1901658,GO:1901659,GO:1904724,GO:1904813
EggNOG free text desc.cytidine deaminase activity
EggNOG OGsCOG0295@1,KOG0833@2759
EC3.5.4.5
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size925
Cds size294
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1206.1627.1prot_F-serratus_M_contig1206.1627.1Fucus serratus malepolypeptideF-serratus_M_contig1206 79458..79751 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929122.1392076-UTR-F-serratus_M_contig1206:79084..794571622929122.1392076-UTR-F-serratus_M_contig1206:79084..79457Fucus serratus maleUTRF-serratus_M_contig1206 79085..79457 +
1690962714.132433-UTR-F-serratus_M_contig1206:79084..794571690962714.132433-UTR-F-serratus_M_contig1206:79084..79457Fucus serratus maleUTRF-serratus_M_contig1206 79085..79457 +
1622929122.1764894-UTR-F-serratus_M_contig1206:79751..800091622929122.1764894-UTR-F-serratus_M_contig1206:79751..80009Fucus serratus maleUTRF-serratus_M_contig1206 79752..80009 +
1690962714.1591597-UTR-F-serratus_M_contig1206:79751..800091690962714.1591597-UTR-F-serratus_M_contig1206:79751..80009Fucus serratus maleUTRF-serratus_M_contig1206 79752..80009 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929122.157894-CDS-F-serratus_M_contig1206:79457..797511622929122.157894-CDS-F-serratus_M_contig1206:79457..79751Fucus serratus maleCDSF-serratus_M_contig1206 79458..79751 +
1690962714.150217-CDS-F-serratus_M_contig1206:79457..797511690962714.150217-CDS-F-serratus_M_contig1206:79457..79751Fucus serratus maleCDSF-serratus_M_contig1206 79458..79751 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1206.1627.1

>prot_F-serratus_M_contig1206.1627.1 ID=prot_F-serratus_M_contig1206.1627.1|Name=mRNA_F-serratus_M_contig1206.1627.1|organism=Fucus serratus male|type=polypeptide|length=98bp
MTTATKKRTLGMERSTSDLSRSNAVDMSASAIGRNKDRGSGSGGAQLMEG
DKAEASFQGWGRYYRVYISRGHFDGTFNLDSKNGEKKRGVARGIVSA*
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mRNA from alignment at F-serratus_M_contig1206:79085..80009+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1206.1627.1 ID=mRNA_F-serratus_M_contig1206.1627.1|Name=mRNA_F-serratus_M_contig1206.1627.1|organism=Fucus serratus male|type=mRNA|length=925bp|location=Sequence derived from alignment at F-serratus_M_contig1206:79085..80009+ (Fucus serratus male)
TTTTTCGATGGAGACATGCCGAAGCAAACTATCGTGGACGGAGCCGGTAT
TATATGGGTCGGATCATTCGCGCAAAGGCGGATTAAAGGTTTGATATTGA
CTACGACGACGAAGAAAAAGAGCGAGATAACACACAGGCCTACACAGGGG
TAACCGCGAGATATATGATAAACTGATTTCCCGTCTAGGGTCGCGCGTTA
TGACGGGTAAAACGATCCTAGGAAGAAGGGTTTAATTGAATGATAATAGT
GGAGTCAGCAGCATCGACAGCAGTTAGCAGAAGGAGGATAAGGTGAAGGT
GAGGTATAGAGCGAAGGGCCGCAGTTGTTTCTCCAGGCGAATAGCTCGGA
TAAATTCCGATGGCACCCTCGACATGACTACGGCGACGAAAAAGAGGACA
CTGGGAATGGAAAGGAGCACGTCAGATCTCTCGAGGTCCAATGCTGTCGA
CATGTCCGCATCTGCAATTGGGCGCAATAAGGACCGAGGCAGTGGAAGCG
GTGGAGCACAACTTATGGAGGGGGACAAAGCGGAAGCCAGTTTTCAAGGA
TGGGGCCGGTATTATCGAGTTTACATCAGCCGAGGGCATTTTGACGGCAC
CTTCAACTTGGATAGCAAGAATGGCGAAAAAAAGCGTGGCGTAGCACGTG
GTATAGTGTCGGCCTGACGGAATTCCAGGTGGAACGCGGGGCAGTCGACG
AGACGGGTACGCTAACAGCAGGCCACGTAATGAAGTAGGAAAACCCCACC
AGAATCGGCTGAAAGGAAAAGAAAGGGTCGAGGCAATATAATAGGGTACA
CGTTAGGAATTCTATTTGGGTAGTATTGTATGCCTGAGTTCGGCTGGGAC
GATATCGGGCACGATGGCGGGGATAAGGGATTTGGCTTAGTAATGGGACA
CGTAAGAGAGGTACCTCAATGATTC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1206:79085..80009+

>mRNA_F-serratus_M_contig1206.1627.1 ID=mRNA_F-serratus_M_contig1206.1627.1|Name=mRNA_F-serratus_M_contig1206.1627.1|organism=Fucus serratus male|type=CDS|length=588bp|location=Sequence derived from alignment at F-serratus_M_contig1206:79085..80009+ (Fucus serratus male)
ATGACTACGGCGACGAAAAAGAGGACACTGGGAATGGAAAGGAGCACGTC
AGATCTCTCGAGGTCCAATGCTGTCGACATGTCCGCATCTGCAATTGGGC
GCAATAAGGACCGAGGCAGTGGAAGCGGTGGAGCACAACTTATGGAGGGG
GACAAAGCGGAAGCCAGTTTTCAAGGATGGGGCCGGTATTATCGAGTTTA
CATCAGCCGAGGGCATTTTGACGGCACCTTCAACTTGGATAGCAAGAATG
GCGAAAAAAAGCGTGGCGTAGCACGTGGTATAGTGTCGGCCTGAATGACT
ACGGCGACGAAAAAGAGGACACTGGGAATGGAAAGGAGCACGTCAGATCT
CTCGAGGTCCAATGCTGTCGACATGTCCGCATCTGCAATTGGGCGCAATA
AGGACCGAGGCAGTGGAAGCGGTGGAGCACAACTTATGGAGGGGGACAAA
GCGGAAGCCAGTTTTCAAGGATGGGGCCGGTATTATCGAGTTTACATCAG
CCGAGGGCATTTTGACGGCACCTTCAACTTGGATAGCAAGAATGGCGAAA
AAAAGCGTGGCGTAGCACGTGGTATAGTGTCGGCCTGA
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