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Homology
BLAST of mRNA_F-serratus_M_contig1206.1624.1 vs. uniprot
Match: D8LEY6_ECTSI (J domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEY6_ECTSI) HSP 1 Score: 137 bits (345), Expect = 1.400e-32 Identity = 87/194 (44.85%), Postives = 115/194 (59.28%), Query Frame = 2
Query: 674 PGSRKRPPEEEDIWSKSSVFEFRSLNDPATNTSMYRRGFGDERSDSSALKKS--PQPRQQSDSDSLPTAYTEDDPDNPDFVTPESSNN----DWFRFREKEHLVWSKSTRSNVDKLKEGVSRNK----GDA-KVELSTQLGLPATATHDELRAEYLIEVKRCHPDMAGDNEFRAKMLERRFQRLTMAWEAYTGE 1222
P S++RPPEE+DIWSK SVFEF+SLNDP TN Y+ G S + S P P ++ S P A+ + D + P ++ D+F FREK+ L S R V++ G A KVEL+TQLGLPA++T+DELR Y +E+KRCHPD+AGDNEFR K LER+FQ+L W+ + E
Sbjct: 41 PASKRRPPEEDDIWSKHSVFEFKSLNDPDTNACGYKGLSGQPSSSRRRTRSSQAPAPERRLTSSQQPAAFFDGVGDLKEAERPTGTDAAFDADFFAFREKDSLA-SVKRRREVERXXXXXXXXXXXXDGSAVKVELATQLGLPASSTYDELRTAYRVEIKRCHPDLAGDNEFRVKFLERKFQKLQGCWDMFNAE 233
BLAST of mRNA_F-serratus_M_contig1206.1624.1 vs. uniprot
Match: A0A6H5KWT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWT2_9PHAE) HSP 1 Score: 74.3 bits (181), Expect = 1.080e-10 Identity = 60/149 (40.27%), Postives = 79/149 (53.02%), Query Frame = 2
Query: 674 PGSRKRPPEEEDIWSKSSVFEFRSLNDPATNTSMYRRGFGDERSDSSALKKS--PQPRQQSDSDSLPTAYTEDDPDNPDFVTPESSNN----DWFRFREKEHLVWSKSTRSNVDKLKEGVSRN---KGDA-KVELSTQLGLPATATHDE 1090
P S++RPPEE+DIWSK SVFEF+SLNDP TN Y+ G S + S P P ++ S P A+ + D + P ++ D+F FREK+ L K KG A KVEL+TQLGLPA++T+DE
Sbjct: 143 PASKRRPPEEDDIWSKHSVFEFKSLNDPDTNACGYKGLSGQPTSSPRRTRSSQAPAPARRLTSSQQPGAFFDGVADLKEAERPTETDATFDADFFAFREKDLLASVKRRXXXXXXXXXXXXXXXXXKGSAVKVELATQLGLPASSTYDE 291
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | mitochondrion |
| Ec32 ortholog description | DnaJ domain |
| Ec32 ortholog | Ec-21_006040.1 |
| Exons | 3 |
| Model size | 1854 |
| Cds size | 1464 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622929121.5375333-UTR-F-serratus_M_contig1206:24848..25237 | 1622929121.5375333-UTR-F-serratus_M_contig1206:24848..25237 | Fucus serratus male | UTR | F-serratus_M_contig1206 24849..25237 - |
| 1690962713.806806-UTR-F-serratus_M_contig1206:24848..25237 | 1690962713.806806-UTR-F-serratus_M_contig1206:24848..25237 | Fucus serratus male | UTR | F-serratus_M_contig1206 24849..25237 - |
| 1622929121.6082275-UTR-F-serratus_M_contig1206:29171..29172 | 1622929121.6082275-UTR-F-serratus_M_contig1206:29171..29172 | Fucus serratus male | UTR | F-serratus_M_contig1206 29172..29172 - |
| 1690962713.8563213-UTR-F-serratus_M_contig1206:29171..29172 | 1690962713.8563213-UTR-F-serratus_M_contig1206:29171..29172 | Fucus serratus male | UTR | F-serratus_M_contig1206 29172..29172 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622929121.554393-CDS-F-serratus_M_contig1206:25237..25612 | 1622929121.554393-CDS-F-serratus_M_contig1206:25237..25612 | Fucus serratus male | CDS | F-serratus_M_contig1206 25238..25612 - |
| 1690962713.8204272-CDS-F-serratus_M_contig1206:25237..25612 | 1690962713.8204272-CDS-F-serratus_M_contig1206:25237..25612 | Fucus serratus male | CDS | F-serratus_M_contig1206 25238..25612 - |
| 1622929121.5729692-CDS-F-serratus_M_contig1206:26000..26346 | 1622929121.5729692-CDS-F-serratus_M_contig1206:26000..26346 | Fucus serratus male | CDS | F-serratus_M_contig1206 26001..26346 - |
| 1690962713.828973-CDS-F-serratus_M_contig1206:26000..26346 | 1690962713.828973-CDS-F-serratus_M_contig1206:26000..26346 | Fucus serratus male | CDS | F-serratus_M_contig1206 26001..26346 - |
| 1622929121.593397-CDS-F-serratus_M_contig1206:28428..29171 | 1622929121.593397-CDS-F-serratus_M_contig1206:28428..29171 | Fucus serratus male | CDS | F-serratus_M_contig1206 28429..29171 - |
| 1690962713.8407059-CDS-F-serratus_M_contig1206:28428..29171 | 1690962713.8407059-CDS-F-serratus_M_contig1206:28428..29171 | Fucus serratus male | CDS | F-serratus_M_contig1206 28429..29171 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1206.1624.1 >prot_F-serratus_M_contig1206.1624.1 ID=prot_F-serratus_M_contig1206.1624.1|Name=mRNA_F-serratus_M_contig1206.1624.1|organism=Fucus serratus male|type=polypeptide|length=488bp
MGARLGSLRQLWAILRFRLHPAFEPFFCYRYSSILIRGSCYRGFCGGMLN PVVVVELAWQVKDGLSHAAAATSFVCSPPPPSTFLKPSRPRYLSYPVAGR WEIEREFARSASPRALQTMMYRSCLLDERGRRHDDPFGLHRSSQRSTAKR LYYAQRHYFSDHPSDPLTSPCGSSRGQGFARGCSDGGSFLQDERFSSSCH RFRVRGRRTSRLASNSSTGDWSSTPGSRKRPPEEEDIWSKSSVFEFRSLN DPATNTSMYRRGFGDERSDSSALKKSPQPRQQSDSDSLPTAYTEDDPDNP DFVTPESSNNDWFRFREKEHLVWSKSTRSNVDKLKEGVSRNKGDAKVELS TQLGLPATATHDELRAEYLIEVKRCHPDMAGDNEFRAKMLERRFQRLTMA WEAYTGECRNPLPEPSAERSTEPLTESLTATERQSESDGTARDRARARAK AEYLKAEARARAATAATQYTRTMDPGRKYLDTGASSC* back to topmRNA from alignment at F-serratus_M_contig1206:24849..29172- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-serratus_M_contig1206.1624.1 ID=mRNA_F-serratus_M_contig1206.1624.1|Name=mRNA_F-serratus_M_contig1206.1624.1|organism=Fucus serratus male|type=mRNA|length=4324bp|location=Sequence derived from alignment at F-serratus_M_contig1206:24849..29172- (Fucus serratus male) CATGGGCGCCCGTCTTGGCTCGCTGAGACAACTTTGGGCAATTCTTCGCT
TCCGGCTGCATCCGGCTTTTGAACCTTTTTTCTGTTATAGATATTCATCT
ATCTTAATCCGGGGCAGCTGCTATCGGGGATTTTGTGGCGGCATGTTGAA
TCCCGTGGTGGTAGTAGAACTTGCGTGGCAGGTGAAAGATGGCCTCTCGC
ACGCTGCCGCCGCGACATCCTTCGTGTGTTCTCCGCCGCCCCCATCCACG
TTCTTAAAGCCGTCCAGGCCACGTTACCTCTCCTACCCAGTTGCTGGACG
ATGGGAGATAGAAAGAGAGTTTGCCCGATCGGCATCTCCGCGGGCTCTGC
AGACGATGATGTACCGATCTTGTCTTCTTGATGAGCGTGGGCGCCGCCAC
GACGATCCATTCGGCTTGCACCGCAGCAGCCAGCGTTCTACCGCAAAACG
TTTATACTACGCCCAGCGGCATTACTTCTCCGATCATCCGTCAGACCCGT
TGACGAGTCCTTGCGGTAGCTCTAGAGGGCAAGGATTTGCGAGAGGGTGC
AGTGATGGCGGTTCATTTTTGCAAGATGAGAGATTCTCGTCCTCCTGCCA
CAGGTTTAGAGTCAGGGGCCGACGAACTTCCCGATTGGCTAGTAACAGCA
GCACAGGGGACTGGAGCTCAACCCCCGGGTCGCGGAAACGGCCGCCAGAA
GAGGAGGATATCTGGAGCAAGTCCTCCGTATTTGAGTTCAGGAGGTGAGC
GCGAGGGTTCGTAAAATGTGCTATTAATGGTTGTAGATGATTTCAGGGGC
TGGTTGAGAGGACTTTTCTACTGAAATTGTGTTCCATGGTAAAATGCACC
GCTGCAGAGAAGTCAGGACTGGACTACGGCATGCAGCACTATGCCCTAAC
GTGGCGGGAAGGGCCAAGGACAGGATAACCCAAAGCAAGCGTGTTCTTGC
TGGTTCGCTCGCCATAGTTGATTAGCCACAAGTGGTGCATTCTTGTAACG
TCCGGGCTTTGCAGATAACATGCTGTCTATCTCCGGCGTTACGTTTGTTT
GGTTTTGTTTTCGTCTTTTTGCTTTCATCGAAGCCGCGGCCCTTTGTTCA
ACCGTTCTTCGATACAACAGTATGCATGCGCCCCGACAGCCACACGCAGT
TACATAACAAGTGTCTGCACAATTGTCTGCGTCCTCTTTAGTTTTTGTGT
TTCACTTTGGTTTCGTGGGAGGTATCGCCTTTTCCGACTGTTTATATGTA
CGATTACCGTTTTTACCTTCCGTATGGTGCTTTTGAAGAAACATCTGAAT
GCACCTACTAGACCTTATGATCCGCCCCCGGTAGGGGGAAAAAAATCAAA
ACGTTTACTCCGGAGTAGGTGGTATCAAAGGCTGCGAATACAAAACCTCT
TCCTGGCATTTAAACGGGTTGTTACCTTGCGACCCCGGACTGGACTGTTG
ACACCAACCAGCTCATGTTAGAGTTCAGTAACAGTAATAAATATAAAATC
ACTTGCATCTGACTCCAAAACCTCAAGATGGCATAGCAGTGTACTCCCAC
ACTTTCTACTGTGCTGTCTATCGCACATGTCCGCCACAGCAGCAATATTA
ATAGTGTTCAAAGGGTGTTGGGAAAAGAGAGGCGCACAAAATTTGGTCAT
AGTCCATGGTAAAAGCTGAAAAGGCAGCACCCGTTACTCGAACTACCTTC
AGGACTACTGGCCCTGTGCCGGCGGGCTCTCGGCGATGAACGCCACCGGC
CCGCAATCATGTGACCTGATAAACTCGGGACGGCTGACAGCCCATTGGCG
TATGGCGGTTTAAATAAATAAATGGACGCCGCCGCGGAAACCGGGAGGAA
TTCAACGAGTAAGCACCATATATCTATTTTCAGCCTGAGTTTGGAGAATG
AGAATATTCGCGCGGGACCGGACGAACGAACTTGTCTCCCGAGACCAAAT
TCCCAGGCGCGAACGGGTGGTACAGGAAATACCCCTTTTCCCTGTTCAGC
TGACCACGAGCACGATATTGGCAACTACACCCGGTTGATACATACCTATT
CTTGGCATAAGTCGTGACAGTACATGCGAACCATCTGTTGTTGTACGATT
ACTCGTAGGCTGTGATAGTTTTAGTTACTGTTTTGTACCAATAACAGTTA
TCCAACGATTCCTTCGCTTGACCCAGGCGTCAACGTGACCGTTCCGGTAC
GGCATCGCGTGTACAATACTGTAGTGTAATTCATGTAGGATAGGATGAAA
AGGAACCCCTGAGTAAGCACCACATTCAGCCTGGGTGTGGAGAATAAGTG
GGCTGACCCGGGACGGGACGACCGAACCCTGTCTCGCGAGACCAAAACTC
TCAGGCGCGAACGGGGACAGGGGAACATTTATTTCCCCTTTCCAGTTGAC
CACGAGCAGGATTGGCAACCATACCGTTTGATTCCCAACATGTCACCTGG
TATATGTGACGAACATATATATATATATATTATATATATATATCCTTCTC
TTTCTGTTGTTTAAAAAAAAATCAGAACGCGCCTAAACCTTCCGAGCATC
CCCCAGTCAGGAGGAAAAAAATGTCAAAACGTTTAGGTGGGATCATAGGC
TGCAAATACAAAACCTCTTCATGGTATTTAGACGGGTTCCCCTATGGTAG
TGACATTAGGTCAACAACAGTATAATATCCTTAACTTTTTGTTGTTTATG
CTCCACCCCTGAAGTATTTAGTTCCTACTCAATGATCAATGATTTTGAAA
ACCGTTTTCATTCCTCTTTCTAAAGGGGTTCTCAATTACCACTCGGGTTC
CTTTCGCGCGTTTTTTTTCAACACAGTTTGAACGATCCGGCCACCAACAC
ATCCATGTACCGCCGTGGTTTTGGCGACGAGCGCAGTGATTCCTCGGCAC
TGAAAAAGTCCCCTCAACCACGGCAGCAGTCCGACTCCGACTCGCTTCCC
ACCGCGTACACCGAAGACGATCCTGACAACCCCGACTTTGTGACGCCTGA
ATCCAGCAACAACGACTGGTTTCGCTTCCGAGAGAAGGAACACCTCGTGT
GGTCGAAGTCCACCAGGTCGAACGTGGATAAGCTCAAAGAAGGCGTTTCG
CGCAACAAGGGGGACGCGAAGGTGGAGCTATCGACCCAGCTCGGTTTGCC
TGCAACCGCAACGCACGATGAGGTGTGGCACAAGAGTCTGAATGCTATGC
TGCATTTCTGCAGAGGGAAGAATCCATTTTTTTTTTTAATGTTTCCTGCC
CGATCTTATCATAGGGTTGTAAAAAATTCTAAAGGAGCCAGTTCGACGAT
CTAAGAGGTACGTACCTCATCGATGCTGACATGGCTCCATGTCCCATTTC
GGGCCGCCTAGTTGCCCGACGATTACGCAAAACTTTATGAATCAATGATG
TGCTGTACATGTGCTACCTTCGGTGCGTCAGTAAAGCGTACATTTCATTC
CTGAACAGCGATGGCCAAGGTTCTTCCACAGGGAACCCTGTTTCGACTAC
AAAGGAGCTTTCTGACACACTCTACCCCCTCCCCCCTTTCCACCCCCACC
GTTTGCAAAGCTCCGCGCAGAATACCTGATTGAGGTCAAGCGTTGTCACC
CGGACATGGCTGGAGACAACGAGTTCCGCGCCAAGATGCTCGAGCGTCGA
TTCCAGCGGCTTACGATGGCGTGGGAGGCGTACACGGGGGAATGTCGAAA
CCCTCTCCCGGAACCATCCGCGGAACGGTCCACGGAACCGCTAACGGAAT
CACTTACCGCAACGGAAAGACAATCCGAAAGCGATGGGACCGCGCGAGAC
CGGGCGCGGGCCCGGGCAAAGGCAGAATACTTGAAGGCCGAGGCGAGAGC
TCGAGCTGCGACGGCGGCGACTCAGTACACCCGCACCATGGACCCGGGAC
GGAAGTATTTGGATACAGGAGCCTCGAGCTGTTGATGTACTGTAGATGCA
GACTCTTCCGAGGGAGCGGCGCGAGGCACGGGGGTGGGGAAATCCGCCCG
ACGCGCACCCCGAACGTGGACAGTTTGAAGCGTAAACGTTGGCGAAAAAA
ACTTAAATCTCGGTGCGAGGTTCCTAGATTCGTCGAGGAAACCATATTTG
ATACCGCTGTAAAAACGTAACATACGTACAGCAAGCAAGACCTTACGGGA
ACTCTTGAATTTTGGAGGCCCGTGATCTAGTAGGTAACCTGCATACCTAC
TAGTGCGGAAGTCGTGAGTTCGATTCTTAGCTTAAGCAGAATTTGTGTTC
TTTCTTTCGTAACGGAAAGCGTGGGAACGCGAGTAAGTAAAATTCAACCA
TTGGTTGACGATTTGTAAGAGTGC back to topCoding sequence (CDS) from alignment at F-serratus_M_contig1206:24849..29172- >mRNA_F-serratus_M_contig1206.1624.1 ID=mRNA_F-serratus_M_contig1206.1624.1|Name=mRNA_F-serratus_M_contig1206.1624.1|organism=Fucus serratus male|type=CDS|length=2928bp|location=Sequence derived from alignment at F-serratus_M_contig1206:24849..29172- (Fucus serratus male) ATGGGCGCCCGTCTTGGCTCGCTGAGACAACTTTGGGCAATTCTTCGCTT CCGGCTGCATCCGGCTTTTGAACCTTTTTTCTGTTATAGATATTCATCTA TCTTAATCCGGGGCAGCTGCTATCGGGGATTTTGTGGCGGCATGTTGAAT CCCGTGGTGGTAGTAGAACTTGCGTGGCAGGTGAAAGATGGCCTCTCGCA CGCTGCCGCCGCGACATCCTTCGTGTGTTCTCCGCCGCCCCCATCCACGT TCTTAAAGCCGTCCAGGCCACGTTACCTCTCCTACCCAGTTGCTGGACGA TGGGAGATAGAAAGAGAGTTTGCCCGATCGGCATCTCCGCGGGCTCTGCA GACGATGATGTACCGATCTTGTCTTCTTGATGAGCGTGGGCGCCGCCACG ACGATCCATTCGGCTTGCACCGCAGCAGCCAGCGTTCTACCGCAAAACGT TTATACTACGCCCAGCGGCATTACTTCTCCGATCATCCGTCAGACCCGTT GACGAGTCCTTGCGGTAGCTCTAGAGGGCAAGGATTTGCGAGAGGGTGCA GTGATGGCGGTTCATTTTTGCAAGATGAGAGATTCTCGTCCTCCTGCCAC AGGTTTAGAGTCAGGGGCCGACGAACTTCCCGATTGGCTAGTAACAGCAG CACAGGGGACTGGAGCTCAACCCCCGGGTCGCGGAAACGGCCGCCAGAAG AGGAGGATATCTGGAGCAAGTCCTCCGTATTTGAGTTCAGGAGATGGGCG CCCGTCTTGGCTCGCTGAGACAACTTTGGGCAATTCTTCGCTTCCGGCTG CATCCGGCTTTTGAACCTTTTTTCTGTTATAGATATTCATCTATCTTAAT CCGGGGCAGCTGCTATCGGGGATTTTGTGGCGGCATGTTGAATCCCGTGG TGGTAGTAGAACTTGCGTGGCAGGTGAAAGATGGCCTCTCGCACGCTGCC GCCGCGACATCCTTCGTGTGTTCTCCGCCGCCCCCATCCACGTTCTTAAA GCCGTCCAGGCCACGTTACCTCTCCTACCCAGTTGCTGGACGATGGGAGA TAGAAAGAGAGTTTGCCCGATCGGCATCTCCGCGGGCTCTGCAGACGATG ATGTACCGATCTTGTCTTCTTGATGAGCGTGGGCGCCGCCACGACGATCC ATTCGGCTTGCACCGCAGCAGCCAGCGTTCTACCGCAAAACGTTTATACT ACGCCCAGCGGCATTACTTCTCCGATCATCCGTCAGACCCGTTGACGAGT CCTTGCGGTAGCTCTAGAGGGCAAGGATTTGCGAGAGGGTGCAGTGATGG CGGTTCATTTTTGCAAGATGAGAGATTCTCGTCCTCCTGCCACAGGTTTA GAGTCAGGGGCCGACGAACTTCCCGATTGGCTAGTAACAGCAGCACAGGG GACTGGAGCTCAACCCCCGGGTCGCGGAAACGGCCGCCAGAAGAGGAGGA TATCTGGAGCAAGTCCTCCGTATTTGAGTTCAGGAGTTTGAACGATCCGG CCACCAACACATCCATGTACCGCCGTGGTTTTGGCGACGAGCGCAGTGAT TCCTCGGCACTGAAAAAGTCCCCTCAACCACGGCAGCAGTCCGACTCCGA CTCGCTTCCCACCGCGTACACCGAAGACGATCCTGACAACCCCGACTTTG TGACGCCTGAATCCAGCAACAACGACTGGTTTCGCTTCCGAGAGAAGGAA CACCTCGTGTGGTCGAAGTCCACCAGGTCGAACGTGGATAAGCTCAAAGA AGGCGTTTCGCGCAACAAGGGGGACGCGAAGGTGGAGCTATCGACCCAGC TCGGTTTGCCTGCAACCGCAACGCACGATGAGTTTGAACGATCCGGCCAC CAACACATCCATGTACCGCCGTGGTTTTGGCGACGAGCGCAGTGATTCCT CGGCACTGAAAAAGTCCCCTCAACCACGGCAGCAGTCCGACTCCGACTCG CTTCCCACCGCGTACACCGAAGACGATCCTGACAACCCCGACTTTGTGAC GCCTGAATCCAGCAACAACGACTGGTTTCGCTTCCGAGAGAAGGAACACC TCGTGTGGTCGAAGTCCACCAGGTCGAACGTGGATAAGCTCAAAGAAGGC GTTTCGCGCAACAAGGGGGACGCGAAGGTGGAGCTATCGACCCAGCTCGG TTTGCCTGCAACCGCAACGCACGATGAGCTCCGCGCAGAATACCTGATTG AGGTCAAGCGTTGTCACCCGGACATGGCTGGAGACAACGAGTTCCGCGCC AAGATGCTCGAGCGTCGATTCCAGCGGCTTACGATGGCGTGGGAGGCGTA CACGGGGGAATGTCGAAACCCTCTCCCGGAACCATCCGCGGAACGGTCCA CGGAACCGCTAACGGAATCACTTACCGCAACGGAAAGACAATCCGAAAGC GATGGGACCGCGCGAGACCGGGCGCGGGCCCGGGCAAAGGCAGAATACTT GAAGGCCGAGGCGAGAGCTCGAGCTGCGACGGCGGCGACTCAGTACACCC GCACCATGGACCCGGGACGGAAGTATTTGGATACAGGAGCCTCGAGCTGT TGACTCCGCGCAGAATACCTGATTGAGGTCAAGCGTTGTCACCCGGACAT GGCTGGAGACAACGAGTTCCGCGCCAAGATGCTCGAGCGTCGATTCCAGC GGCTTACGATGGCGTGGGAGGCGTACACGGGGGAATGTCGAAACCCTCTC CCGGAACCATCCGCGGAACGGTCCACGGAACCGCTAACGGAATCACTTAC CGCAACGGAAAGACAATCCGAAAGCGATGGGACCGCGCGAGACCGGGCGC GGGCCCGGGCAAAGGCAGAATACTTGAAGGCCGAGGCGAGAGCTCGAGCT GCGACGGCGGCGACTCAGTACACCCGCACCATGGACCCGGGACGGAAGTA TTTGGATACAGGAGCCTCGAGCTGTTGA back to top
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