mRNA_F-serratus_M_contig1206.1623.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1206.1623.1
Unique NamemRNA_F-serratus_M_contig1206.1623.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1206.1623.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1206contigF-serratus_M_contig1206:107..448 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size342
Cds size330
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929121.3295333-CDS-F-serratus_M_contig1206:106..4361622929121.3295333-CDS-F-serratus_M_contig1206:106..436Fucus serratus maleCDSF-serratus_M_contig1206 107..436 +
1690962713.7834811-CDS-F-serratus_M_contig1206:106..4361690962713.7834811-CDS-F-serratus_M_contig1206:106..436Fucus serratus maleCDSF-serratus_M_contig1206 107..436 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929121.3569667-UTR-F-serratus_M_contig1206:436..4481622929121.3569667-UTR-F-serratus_M_contig1206:436..448Fucus serratus maleUTRF-serratus_M_contig1206 437..448 +
1690962713.7956343-UTR-F-serratus_M_contig1206:436..4481690962713.7956343-UTR-F-serratus_M_contig1206:436..448Fucus serratus maleUTRF-serratus_M_contig1206 437..448 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1206.1623.1prot_F-serratus_M_contig1206.1623.1Fucus serratus malepolypeptideF-serratus_M_contig1206 107..436 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1206.1623.1

>prot_F-serratus_M_contig1206.1623.1 ID=prot_F-serratus_M_contig1206.1623.1|Name=mRNA_F-serratus_M_contig1206.1623.1|organism=Fucus serratus male|type=polypeptide|length=110bp
SGGKLSVGFLTTSAPLSYGITATPSTGSIQRGFGQFDLVVFSSFTSNQSR
YFLRGLTILRISSICKGQLSVSFFLGVRNFLFNAASYHTSCPIRSPVQVH
LALSNRPRF*
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mRNA from alignment at F-serratus_M_contig1206:107..448+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1206.1623.1 ID=mRNA_F-serratus_M_contig1206.1623.1|Name=mRNA_F-serratus_M_contig1206.1623.1|organism=Fucus serratus male|type=mRNA|length=342bp|location=Sequence derived from alignment at F-serratus_M_contig1206:107..448+ (Fucus serratus male)
TCGGGGGGAAAGTTATCGGTGGGATTTCTCACGACGTCAGCACCATTAAG
CTATGGTATCACTGCGACACCTTCCACAGGTAGCATTCAACGCGGGTTCG
GACAATTTGATCTGGTCGTGTTTAGTTCCTTTACCAGCAATCAGTCGCGG
TACTTTCTTCGTGGACTGACTATCTTACGCATCAGCAGCATATGTAAAGG
ACAACTAAGTGTTTCCTTTTTTCTCGGGGTACGCAATTTTCTGTTCAACG
CCGCCTCTTATCACACATCATGTCCAATTAGGTCGCCTGTGCAGGTACAC
CTCGCTTTGTCGAATCGACCCAGATTTTAAAGCAAAAAACGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1206:107..448+

>mRNA_F-serratus_M_contig1206.1623.1 ID=mRNA_F-serratus_M_contig1206.1623.1|Name=mRNA_F-serratus_M_contig1206.1623.1|organism=Fucus serratus male|type=CDS|length=660bp|location=Sequence derived from alignment at F-serratus_M_contig1206:107..448+ (Fucus serratus male)
TCGGGGGGAAAGTTATCGGTGGGATTTCTCACGACGTCAGCACCATTAAG
CTATGGTATCACTGCGACACCTTCCACAGGTAGCATTCAACGCGGGTTCG
GACAATTTGATCTGGTCGTGTTTAGTTCCTTTACCAGCAATCAGTCGCGG
TACTTTCTTCGTGGACTGACTATCTTACGCATCAGCAGCATATGTAAAGG
ACAACTAAGTGTTTCCTTTTTTCTCGGGGTACGCAATTTTCTGTTCAACG
CCGCCTCTTATCACACATCATGTCCAATTAGGTCGCCTGTGCAGGTACAC
CTCGCTTTGTCGAATCGACCCAGATTTTAATCGGGGGGAAAGTTATCGGT
GGGATTTCTCACGACGTCAGCACCATTAAGCTATGGTATCACTGCGACAC
CTTCCACAGGTAGCATTCAACGCGGGTTCGGACAATTTGATCTGGTCGTG
TTTAGTTCCTTTACCAGCAATCAGTCGCGGTACTTTCTTCGTGGACTGAC
TATCTTACGCATCAGCAGCATATGTAAAGGACAACTAAGTGTTTCCTTTT
TTCTCGGGGTACGCAATTTTCTGTTCAACGCCGCCTCTTATCACACATCA
TGTCCAATTAGGTCGCCTGTGCAGGTACACCTCGCTTTGTCGAATCGACC
CAGATTTTAA
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