mRNA_F-serratus_M_contig1203.1617.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1203.1617.1
Unique NamemRNA_F-serratus_M_contig1203.1617.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1203.1617.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1203contigF-serratus_M_contig1203:254477..255118 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size643
Cds size345
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929120.8535345-CDS-F-serratus_M_contig1203:254476..2548211622929120.8535345-CDS-F-serratus_M_contig1203:254476..254821Fucus serratus maleCDSF-serratus_M_contig1203 254477..254821 +
1690962713.5716398-CDS-F-serratus_M_contig1203:254476..2548211690962713.5716398-CDS-F-serratus_M_contig1203:254476..254821Fucus serratus maleCDSF-serratus_M_contig1203 254477..254821 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929120.86835-UTR-F-serratus_M_contig1203:254821..2551181622929120.86835-UTR-F-serratus_M_contig1203:254821..255118Fucus serratus maleUTRF-serratus_M_contig1203 254822..255118 +
1690962713.5869377-UTR-F-serratus_M_contig1203:254821..2551181690962713.5869377-UTR-F-serratus_M_contig1203:254821..255118Fucus serratus maleUTRF-serratus_M_contig1203 254822..255118 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1203.1617.1prot_F-serratus_M_contig1203.1617.1Fucus serratus malepolypeptideF-serratus_M_contig1203 254477..254821 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1203.1617.1

>prot_F-serratus_M_contig1203.1617.1 ID=prot_F-serratus_M_contig1203.1617.1|Name=mRNA_F-serratus_M_contig1203.1617.1|organism=Fucus serratus male|type=polypeptide|length=115bp
HTHTHTPLLYVLVRFSPAPSACRAKIVSLVTFAREVSARRPATWRPRVPG
TQRTLSSRNQGMDRIANVSGPWLGFNAEQKHPRRQKTPARRPVLESSKVN
LPTQPSNRSSAALQ*
back to top

mRNA from alignment at F-serratus_M_contig1203:254477..255118+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1203.1617.1 ID=mRNA_F-serratus_M_contig1203.1617.1|Name=mRNA_F-serratus_M_contig1203.1617.1|organism=Fucus serratus male|type=mRNA|length=642bp|location=Sequence derived from alignment at F-serratus_M_contig1203:254477..255118+ (Fucus serratus male)
CACACACACACACACACGCCACTGCTGTACGTCCTTGTTCGCTTCTCTCC
TGCCCCCTCCGCTTGCCGTGCAAAGATTGTAAGCCTCGTAACCTTTGCTC
GCGAGGTCTCTGCCCGCCGGCCCGCAACCTGGCGGCCCCGGGTACCCGGG
ACGCAGCGTACCCTTTCTTCGCGTAACCAAGGTATGGACCGCATCGCAAA
CGTTTCGGGTCCATGGCTGGGGTTCAATGCCGAACAAAAACATCCAAGAC
GACAAAAAACACCTGCACGCCGCCCAGTTCTCGAATCCTCGAAAGTCAAT
CTTCCGACGCAACCCTCGAACCGATCCTCCGCTGCTTTACAATAAACAAA
GTGAGGAATTACTCGTGAGCTGCAACTCGTCTCGTCGTCCCTTCCTTGAT
CCATTTGATATATTCATACATATATATATATATGGTACAGCAGAGCCCAG
TGCCCCTGTAGTTACAAATACACATATACCTTGTACCTAGTGCTGAGTAG
TAATATTTGTGGTAACGTCGTCGAACGCCCTTCGAGGCACGAGAGGAGGC
AGCGATCCACATCATCCCGCTCGCCATCATCCGTTGAATCGCTCGTCCAA
GGAAACAGTACGCCGCGCCAAACAAAGGGGGGGAAAATAAAT
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1203:254477..255118+

>mRNA_F-serratus_M_contig1203.1617.1 ID=mRNA_F-serratus_M_contig1203.1617.1|Name=mRNA_F-serratus_M_contig1203.1617.1|organism=Fucus serratus male|type=CDS|length=690bp|location=Sequence derived from alignment at F-serratus_M_contig1203:254477..255118+ (Fucus serratus male)
CACACACACACACACACGCCACTGCTGTACGTCCTTGTTCGCTTCTCTCC
TGCCCCCTCCGCTTGCCGTGCAAAGATTGTAAGCCTCGTAACCTTTGCTC
GCGAGGTCTCTGCCCGCCGGCCCGCAACCTGGCGGCCCCGGGTACCCGGG
ACGCAGCGTACCCTTTCTTCGCGTAACCAAGGTATGGACCGCATCGCAAA
CGTTTCGGGTCCATGGCTGGGGTTCAATGCCGAACAAAAACATCCAAGAC
GACAAAAAACACCTGCACGCCGCCCAGTTCTCGAATCCTCGAAAGTCAAT
CTTCCGACGCAACCCTCGAACCGATCCTCCGCTGCTTTACAATAACACAC
ACACACACACACGCCACTGCTGTACGTCCTTGTTCGCTTCTCTCCTGCCC
CCTCCGCTTGCCGTGCAAAGATTGTAAGCCTCGTAACCTTTGCTCGCGAG
GTCTCTGCCCGCCGGCCCGCAACCTGGCGGCCCCGGGTACCCGGGACGCA
GCGTACCCTTTCTTCGCGTAACCAAGGTATGGACCGCATCGCAAACGTTT
CGGGTCCATGGCTGGGGTTCAATGCCGAACAAAAACATCCAAGACGACAA
AAAACACCTGCACGCCGCCCAGTTCTCGAATCCTCGAAAGTCAATCTTCC
GACGCAACCCTCGAACCGATCCTCCGCTGCTTTACAATAA
back to top