mRNA_F-serratus_M_contig1201.1611.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1201.1611.1
Unique NamemRNA_F-serratus_M_contig1201.1611.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1201.1611.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1201contigF-serratus_M_contig1201:33619..34203 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size586
Cds size456
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929119.8313565-UTR-F-serratus_M_contig1201:33618..337471622929119.8313565-UTR-F-serratus_M_contig1201:33618..33747Fucus serratus maleUTRF-serratus_M_contig1201 33619..33747 +
1690962713.11715-UTR-F-serratus_M_contig1201:33618..337471690962713.11715-UTR-F-serratus_M_contig1201:33618..33747Fucus serratus maleUTRF-serratus_M_contig1201 33619..33747 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929119.850684-CDS-F-serratus_M_contig1201:33747..342031622929119.850684-CDS-F-serratus_M_contig1201:33747..34203Fucus serratus maleCDSF-serratus_M_contig1201 33748..34203 +
1690962713.128498-CDS-F-serratus_M_contig1201:33747..342031690962713.128498-CDS-F-serratus_M_contig1201:33747..34203Fucus serratus maleCDSF-serratus_M_contig1201 33748..34203 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1201.1611.1prot_F-serratus_M_contig1201.1611.1Fucus serratus malepolypeptideF-serratus_M_contig1201 33748..34203 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1201.1611.1

>prot_F-serratus_M_contig1201.1611.1 ID=prot_F-serratus_M_contig1201.1611.1|Name=mRNA_F-serratus_M_contig1201.1611.1|organism=Fucus serratus male|type=polypeptide|length=152bp
MASFDDLKRMGYTSKEITDIFRSVLDVLKDHYNKDTMVGIMFETDENRVR
RDKSNEIAEVVTAHHLDKMKTFLADHKLTTWRRENGFDLQPVVIGKPPPT
RAEDNACLRFQVQELRNALSAYASNPVPPQDACIILEDGEQEVRVDLGLE
QE
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mRNA from alignment at F-serratus_M_contig1201:33619..34203+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1201.1611.1 ID=mRNA_F-serratus_M_contig1201.1611.1|Name=mRNA_F-serratus_M_contig1201.1611.1|organism=Fucus serratus male|type=mRNA|length=585bp|location=Sequence derived from alignment at F-serratus_M_contig1201:33619..34203+ (Fucus serratus male)
CTGGAGGGACAGCGAAGTTGACGATACCGGGAACCGGAGAACGGACCGAA
AGGAGAACGAGACCAGGAGTGGATGCGACGCCGATAAGGGCGTGGGACTC
CTCCTGTGTGCGCCAATAATAAGTAAGCGATGGCTTCTTTCGATGATTTG
AAGAGGATGGGATACACGAGCAAGGAAATAACTGATATTTTTCGCTCTGT
CTTAGATGTACTGAAAGACCACTACAATAAAGACACAATGGTTGGTATCA
TGTTTGAGACCGACGAGAACCGGGTGCGCCGAGATAAATCAAACGAGATC
GCAGAAGTTGTTACTGCTCACCACCTGGATAAGATGAAGACTTTCCTCGC
GGACCACAAGCTAACGACCTGGCGCAGGGAAAACGGTTTTGATCTCCAGC
CAGTAGTGATCGGTAAACCCCCTCCTACGCGCGCAGAGGACAATGCATGT
CTGCGGTTCCAAGTACAGGAATTGCGAAATGCACTTTCGGCATATGCATC
AAATCCCGTTCCACCGCAAGATGCATGTATTATTTTGGAGGATGGAGAAC
AAGAGGTTAGAGTGGACCTGGGGCTAGAACAAGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1201:33619..34203+

>mRNA_F-serratus_M_contig1201.1611.1 ID=mRNA_F-serratus_M_contig1201.1611.1|Name=mRNA_F-serratus_M_contig1201.1611.1|organism=Fucus serratus male|type=CDS|length=912bp|location=Sequence derived from alignment at F-serratus_M_contig1201:33619..34203+ (Fucus serratus male)
ATGGCTTCTTTCGATGATTTGAAGAGGATGGGATACACGAGCAAGGAAAT
AACTGATATTTTTCGCTCTGTCTTAGATGTACTGAAAGACCACTACAATA
AAGACACAATGGTTGGTATCATGTTTGAGACCGACGAGAACCGGGTGCGC
CGAGATAAATCAAACGAGATCGCAGAAGTTGTTACTGCTCACCACCTGGA
TAAGATGAAGACTTTCCTCGCGGACCACAAGCTAACGACCTGGCGCAGGG
AAAACGGTTTTGATCTCCAGCCAGTAGTGATCGGTAAACCCCCTCCTACG
CGCGCAGAGGACAATGCATGTCTGCGGTTCCAAGTACAGGAATTGCGAAA
TGCACTTTCGGCATATGCATCAAATCCCGTTCCACCGCAAGATGCATGTA
TTATTTTGGAGGATGGAGAACAAGAGGTTAGAGTGGACCTGGGGCTAGAA
CAAGAGATGGCTTCTTTCGATGATTTGAAGAGGATGGGATACACGAGCAA
GGAAATAACTGATATTTTTCGCTCTGTCTTAGATGTACTGAAAGACCACT
ACAATAAAGACACAATGGTTGGTATCATGTTTGAGACCGACGAGAACCGG
GTGCGCCGAGATAAATCAAACGAGATCGCAGAAGTTGTTACTGCTCACCA
CCTGGATAAGATGAAGACTTTCCTCGCGGACCACAAGCTAACGACCTGGC
GCAGGGAAAACGGTTTTGATCTCCAGCCAGTAGTGATCGGTAAACCCCCT
CCTACGCGCGCAGAGGACAATGCATGTCTGCGGTTCCAAGTACAGGAATT
GCGAAATGCACTTTCGGCATATGCATCAAATCCCGTTCCACCGCAAGATG
CATGTATTATTTTGGAGGATGGAGAACAAGAGGTTAGAGTGGACCTGGGG
CTAGAACAAGAG
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